Wall clock time and date at job start Mon Mar 30 2020 03:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46945 * 2 1 4 4 C 1.52995 * 109.47031 * 239.99794 * 2 1 3 5 5 C 1.50705 * 109.47006 * 172.29688 * 4 2 1 6 6 H 1.08000 * 119.99968 * 354.49349 * 5 4 2 7 7 C 1.37877 * 119.99992 * 174.49942 * 5 4 2 8 8 N 1.31509 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46848 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46895 * 299.99582 * 9 7 5 12 12 H 1.48495 * 109.46952 * 59.99547 * 9 7 5 13 13 N 1.46901 * 109.46653 * 119.99873 * 2 1 3 14 14 C 1.50105 * 111.00162 * 324.95592 * 13 2 1 15 15 C 1.51385 * 102.37398 * 212.55540 * 14 13 2 16 16 C 1.53002 * 111.67177 * 288.33272 * 15 14 13 17 17 C 1.51616 * 122.94829 * 150.26776 * 15 14 13 18 18 N 1.50106 * 101.49566 * 208.15609 * 17 15 14 19 19 C 1.49772 * 107.62560 * 26.66959 * 18 17 15 20 20 C 1.49478 * 104.56387 * 6.76341 * 19 18 17 21 21 C 1.52997 * 108.56642 * 76.58971 * 20 19 18 22 22 C 1.49473 * 129.10181 * 211.49112 * 20 19 18 23 23 H 1.08997 * 109.47254 * 306.45147 * 1 2 3 24 24 H 1.09000 * 109.46781 * 66.45158 * 1 2 3 25 25 H 1.09000 * 109.47134 * 186.45228 * 1 2 3 26 26 H 1.08996 * 109.47708 * 52.29449 * 4 2 1 27 27 H 1.08999 * 109.47113 * 292.28982 * 4 2 1 28 28 H 0.96999 * 120.00549 * 0.02562 * 8 7 5 29 29 H 1.09001 * 110.82641 * 330.77796 * 14 13 2 30 30 H 1.08999 * 110.82723 * 94.33377 * 14 13 2 31 31 H 1.09003 * 109.46694 * 168.54103 * 16 15 14 32 32 H 1.08996 * 109.47148 * 288.54371 * 16 15 14 33 33 H 1.08997 * 109.46965 * 48.54498 * 16 15 14 34 34 H 1.08993 * 110.48317 * 90.55128 * 17 15 14 35 35 H 1.09006 * 111.98617 * 326.40657 * 17 15 14 36 36 H 1.00899 * 111.00296 * 265.01902 * 18 17 15 37 37 H 1.09007 * 110.41703 * 247.99550 * 19 18 17 38 38 H 1.08999 * 110.42187 * 125.53490 * 19 18 17 39 39 H 1.09000 * 109.46883 * 207.50118 * 21 20 19 40 40 H 1.09001 * 109.46938 * 327.49606 * 21 20 19 41 41 H 1.08991 * 109.47351 * 87.50068 * 21 20 19 42 42 H 1.08999 * 110.41726 * 28.54508 * 22 20 19 43 43 H 1.09009 * 110.41344 * 266.09162 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5350 -0.5585 -1.3481 6 1 4.0567 0.0760 -0.6469 7 6 4.2367 -1.2194 -2.3339 8 7 3.6015 -1.9922 -3.1876 9 14 6.0897 -1.0170 -2.4570 10 1 6.6017 -1.8264 -3.5919 11 1 6.4175 0.4139 -2.6812 12 1 6.7228 -1.4780 -1.1953 13 7 2.0196 -0.6925 1.1995 14 6 1.1172 -0.4404 2.3722 15 6 2.0855 -0.4553 3.5358 16 6 2.5960 -1.8677 3.8280 17 6 1.8663 0.3503 4.8014 18 7 3.2777 0.5810 5.2574 19 6 4.1579 0.5408 4.0463 20 6 3.2089 0.4547 2.8946 21 6 2.6020 1.8392 2.6588 22 6 3.3903 -0.2171 1.5717 23 1 -0.3633 0.6106 0.8266 24 1 -0.3633 0.4106 -0.9421 25 1 -0.3633 -1.0212 0.1155 26 1 1.5687 -0.2933 -2.1338 27 1 1.7937 -1.7810 -1.1829 28 1 2.6393 -2.0971 -3.1240 29 1 0.6309 0.5312 2.2851 30 1 0.3795 -1.2366 2.4717 31 1 3.4323 -1.8148 4.5250 32 1 1.7936 -2.4603 4.2675 33 1 2.9256 -2.3342 2.8997 34 1 1.3127 -0.2354 5.5352 35 1 1.3643 1.2968 4.6008 36 1 3.5583 -0.1153 5.9316 37 1 4.8029 -0.3375 4.0739 38 1 4.7550 1.4503 3.9797 39 1 1.6154 1.7315 2.2082 40 1 2.5116 2.3631 3.6104 41 1 3.2467 2.4093 1.9900 42 1 4.0734 -1.0614 1.6645 43 1 3.7605 0.4931 0.8322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705659327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:50 Heat of formation + Delta-G solvation = 40.986667 kcal Electronic energy + Delta-G solvation = -20687.406935 eV Core-core repulsion = 17961.569946 eV Total energy + Delta-G solvation = -2725.836989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58975 -36.83919 -33.57408 -32.05833 -31.60069 -28.94286 -28.39988 -27.33584 -25.50099 -24.65500 -23.49515 -22.28116 -19.94956 -19.28510 -17.95155 -16.80335 -16.16987 -15.57265 -15.23755 -14.83479 -14.11044 -13.71031 -13.52427 -13.08202 -12.88580 -12.58107 -12.35298 -12.14485 -12.10843 -11.77633 -11.57693 -11.46828 -11.45454 -11.25729 -11.12121 -10.77112 -10.66409 -10.39635 -10.31950 -10.10896 -10.00492 -9.59101 -9.39315 -8.58312 -8.35469 -8.23508 -7.51423 -6.23869 -3.91708 3.46379 3.48323 3.66407 3.99090 4.15816 4.47231 4.60764 4.76575 5.21912 5.25120 5.26661 5.38883 5.41565 5.52770 5.58952 5.70873 5.73762 5.78797 5.80582 5.85691 5.93300 5.98320 6.01621 6.02436 6.10827 6.22499 6.28433 6.37685 6.44836 6.51547 6.56433 6.57782 6.66906 6.76112 6.90529 7.28084 7.34688 7.47255 7.63460 7.98334 8.33151 8.56815 8.99930 9.78364 11.15500 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024408 B = 0.007511 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.866181 B = 3726.725246 C = 4319.986788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 H 0.033 0.967 4 C 0.021 3.979 5 C -0.590 4.590 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 1.062 2.938 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.496 5.496 14 C 0.053 3.947 15 C -0.118 4.118 16 C -0.129 4.129 17 C 0.065 3.935 18 N -0.681 5.681 19 C 0.074 3.926 20 C -0.119 4.119 21 C -0.153 4.153 22 C 0.079 3.921 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.003 0.997 27 H 0.018 0.982 28 H 0.268 0.732 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.334 0.666 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 4.405 15.271 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 H 0.051 0.949 4 C -0.017 4.017 5 C -0.629 4.629 6 H 0.072 0.928 7 C -0.189 4.189 8 N -0.555 5.555 9 Si 0.891 3.109 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.220 5.220 14 C -0.075 4.075 15 C -0.120 4.120 16 C -0.187 4.187 17 C -0.064 4.064 18 N -0.309 5.309 19 C -0.055 4.055 20 C -0.121 4.121 21 C -0.209 4.209 22 C -0.049 4.049 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.022 0.978 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.149 0.851 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.987 4.131 14.310 15.026 hybrid contribution -1.365 0.370 0.796 1.623 sum -3.353 4.501 15.106 16.115 Atomic orbital electron populations 1.22092 0.96939 1.01443 1.00574 1.21852 0.92268 0.95686 0.92465 0.94850 1.19226 0.96712 0.95610 0.90125 1.22157 0.92535 1.31223 1.16955 0.92800 1.25697 1.06264 0.93804 0.93144 1.70758 1.11177 1.36860 1.36666 0.83647 0.75125 0.75975 0.76172 1.20922 1.21683 1.21527 1.65283 1.00271 1.54787 1.01677 1.22650 0.95232 0.99830 0.89761 1.22621 0.98067 0.95883 0.95468 1.21661 0.99837 0.94655 1.02503 1.22422 0.90509 0.98814 0.94637 1.63303 1.01887 1.53191 1.12527 1.21631 0.94446 1.01160 0.88273 1.21921 0.97249 0.96180 0.96729 1.22349 1.01093 0.95843 1.01649 1.22073 0.91988 0.98699 0.92101 0.93865 0.92714 0.92437 0.97849 0.96344 0.92164 0.92735 0.91106 0.93675 0.92959 0.90298 0.91820 0.89840 0.85143 0.92827 0.90530 0.92137 0.91940 0.92795 0.90995 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.29 37.16 0.31 -2.32 16 2 C 0.09 1.75 2.05 -67.71 -0.14 1.61 16 3 H 0.03 0.71 7.23 -51.93 -0.38 0.34 16 4 C 0.02 0.52 4.01 -27.88 -0.11 0.41 16 5 C -0.59 -16.32 8.23 -34.44 -0.28 -16.61 16 6 H 0.05 1.44 4.81 -52.49 -0.25 1.19 16 7 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 8 N -0.92 -28.37 13.65 55.43 0.76 -27.61 16 9 Si 1.06 25.48 29.90 -169.99 -5.08 20.40 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.50 -9.34 4.67 -224.43 -1.05 -10.39 16 14 C 0.05 0.80 4.15 -2.84 -0.01 0.79 16 15 C -0.12 -1.58 1.06 -153.19 -0.16 -1.75 16 16 C -0.13 -1.72 8.34 37.16 0.31 -1.41 16 17 C 0.07 0.75 6.34 -2.73 -0.02 0.74 16 18 N -0.68 -7.87 7.07 -111.68 -0.79 -8.66 16 19 C 0.07 0.95 6.00 -3.96 -0.02 0.93 16 20 C -0.12 -1.73 1.27 -155.16 -0.20 -1.93 16 21 C -0.15 -2.18 7.18 37.16 0.27 -1.91 16 22 C 0.08 1.45 4.12 -3.95 -0.02 1.44 16 23 H 0.04 0.64 6.27 -51.93 -0.33 0.32 16 24 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.00 0.09 8.11 -51.93 -0.42 -0.33 16 27 H 0.02 0.51 7.79 -51.93 -0.40 0.10 16 28 H 0.27 8.29 7.18 -40.82 -0.29 8.00 16 29 H 0.05 0.81 4.05 -51.93 -0.21 0.59 16 30 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.04 0.54 6.09 -51.93 -0.32 0.22 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.26 6.57 -51.93 -0.34 0.92 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.99 6.38 -51.93 -0.33 0.66 16 36 H 0.33 3.37 8.46 -39.29 -0.33 3.04 16 37 H 0.05 0.68 7.34 -51.93 -0.38 0.29 16 38 H 0.08 0.99 7.98 -51.93 -0.41 0.57 16 39 H 0.06 0.90 4.70 -51.93 -0.24 0.65 16 40 H 0.06 0.83 6.21 -51.93 -0.32 0.51 16 41 H 0.05 0.80 8.03 -51.93 -0.42 0.39 16 42 H 0.07 1.42 7.47 -51.93 -0.39 1.03 16 43 H 0.08 1.70 4.71 -51.92 -0.24 1.45 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -29.52 303.16 -8.69 -38.22 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.92 Total: 3.17 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -0.18 Total: -19.70 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.08 Total: -46.65 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.52 -8.69 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705659327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.204 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds