Wall clock time and date at job start Mon Mar 30 2020 03:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.46945 * 2 1 4 4 C 1.52995 * 109.47031 * 239.99794 * 2 1 3 5 5 C 1.50705 * 109.47006 * 172.29688 * 4 2 1 6 6 H 1.08000 * 119.99968 * 354.49349 * 5 4 2 7 7 C 1.37877 * 119.99992 * 174.49942 * 5 4 2 8 8 N 1.31509 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99877 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46848 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46895 * 299.99582 * 9 7 5 12 12 H 1.48495 * 109.46952 * 59.99547 * 9 7 5 13 13 N 1.46901 * 109.46653 * 119.99873 * 2 1 3 14 14 C 1.50105 * 111.00162 * 324.95592 * 13 2 1 15 15 C 1.51385 * 102.37398 * 212.55540 * 14 13 2 16 16 C 1.53002 * 111.67177 * 288.33272 * 15 14 13 17 17 C 1.51616 * 122.94829 * 150.26776 * 15 14 13 18 18 N 1.50106 * 101.49566 * 208.15609 * 17 15 14 19 19 C 1.49772 * 107.62560 * 26.66959 * 18 17 15 20 20 C 1.49478 * 104.56387 * 6.76341 * 19 18 17 21 21 C 1.52997 * 108.56642 * 76.58971 * 20 19 18 22 22 C 1.49473 * 129.10181 * 211.49112 * 20 19 18 23 23 H 1.08997 * 109.47254 * 306.45147 * 1 2 3 24 24 H 1.09000 * 109.46781 * 66.45158 * 1 2 3 25 25 H 1.09000 * 109.47134 * 186.45228 * 1 2 3 26 26 H 1.08996 * 109.47708 * 52.29449 * 4 2 1 27 27 H 1.08999 * 109.47113 * 292.28982 * 4 2 1 28 28 H 0.96999 * 120.00549 * 0.02562 * 8 7 5 29 29 H 1.09001 * 110.82641 * 330.77796 * 14 13 2 30 30 H 1.08999 * 110.82723 * 94.33377 * 14 13 2 31 31 H 1.09003 * 109.46694 * 168.54103 * 16 15 14 32 32 H 1.08996 * 109.47148 * 288.54371 * 16 15 14 33 33 H 1.08997 * 109.46965 * 48.54498 * 16 15 14 34 34 H 1.08993 * 110.48317 * 90.55128 * 17 15 14 35 35 H 1.09006 * 111.98617 * 326.40657 * 17 15 14 36 36 H 1.00899 * 111.00296 * 265.01902 * 18 17 15 37 37 H 1.09007 * 110.41703 * 247.99550 * 19 18 17 38 38 H 1.08999 * 110.42187 * 125.53490 * 19 18 17 39 39 H 1.09000 * 109.46883 * 207.50118 * 21 20 19 40 40 H 1.09001 * 109.46938 * 327.49606 * 21 20 19 41 41 H 1.08991 * 109.47351 * 87.50068 * 21 20 19 42 42 H 1.08999 * 110.41726 * 28.54508 * 22 20 19 43 43 H 1.09009 * 110.41344 * 266.09162 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5350 -0.5585 -1.3481 6 1 4.0567 0.0760 -0.6469 7 6 4.2367 -1.2194 -2.3339 8 7 3.6015 -1.9922 -3.1876 9 14 6.0897 -1.0170 -2.4570 10 1 6.6017 -1.8264 -3.5919 11 1 6.4175 0.4139 -2.6812 12 1 6.7228 -1.4780 -1.1953 13 7 2.0196 -0.6925 1.1995 14 6 1.1172 -0.4404 2.3722 15 6 2.0855 -0.4553 3.5358 16 6 2.5960 -1.8677 3.8280 17 6 1.8663 0.3503 4.8014 18 7 3.2777 0.5810 5.2574 19 6 4.1579 0.5408 4.0463 20 6 3.2089 0.4547 2.8946 21 6 2.6020 1.8392 2.6588 22 6 3.3903 -0.2171 1.5717 23 1 -0.3633 0.6106 0.8266 24 1 -0.3633 0.4106 -0.9421 25 1 -0.3633 -1.0212 0.1155 26 1 1.5687 -0.2933 -2.1338 27 1 1.7937 -1.7810 -1.1829 28 1 2.6393 -2.0971 -3.1240 29 1 0.6309 0.5312 2.2851 30 1 0.3795 -1.2366 2.4717 31 1 3.4323 -1.8148 4.5250 32 1 1.7936 -2.4603 4.2675 33 1 2.9256 -2.3342 2.8997 34 1 1.3127 -0.2354 5.5352 35 1 1.3643 1.2968 4.6008 36 1 3.5583 -0.1153 5.9316 37 1 4.8029 -0.3375 4.0739 38 1 4.7550 1.4503 3.9797 39 1 1.6154 1.7315 2.2082 40 1 2.5116 2.3631 3.6104 41 1 3.2467 2.4093 1.9900 42 1 4.0734 -1.0614 1.6645 43 1 3.7605 0.4931 0.8322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705659327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:50 Heat of formation + Delta-G solvation = 19.926755 kcal Electronic energy + Delta-G solvation = -20688.320161 eV Core-core repulsion = 17961.569946 eV Total energy + Delta-G solvation = -2726.750215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.78127 -38.28914 -35.42496 -33.68835 -32.77661 -30.22722 -29.88522 -28.76046 -26.90524 -25.87137 -25.20391 -23.88627 -21.17116 -20.88113 -19.18617 -18.83233 -17.19419 -16.93218 -16.52525 -16.08493 -15.65169 -15.46324 -15.18194 -14.44004 -14.37037 -13.99514 -13.58053 -13.37156 -13.24792 -13.19278 -13.09534 -12.93914 -12.80133 -12.67861 -12.59545 -12.44670 -12.04411 -11.98651 -11.89184 -11.71853 -11.34109 -11.20380 -10.73377 -10.48510 -10.43289 -9.53320 -8.98840 -8.57027 -6.25049 1.49582 1.58295 1.76068 2.58708 2.86030 2.99714 3.22589 3.28043 3.66074 4.06728 4.08529 4.15346 4.20720 4.24513 4.27587 4.35757 4.50054 4.61475 4.63509 4.64712 4.72867 4.77438 4.85391 4.88965 4.91476 4.98009 5.02647 5.08981 5.12132 5.15550 5.19326 5.29039 5.32674 5.35038 5.46356 5.49118 5.64265 6.04696 6.19075 6.29733 6.34827 6.45897 6.70561 7.54133 8.82097 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024408 B = 0.007511 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.866181 B = 3726.725246 C = 4319.986788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.096 3.904 3 H 0.025 0.975 4 C 0.023 3.977 5 C -0.593 4.593 6 H 0.062 0.938 7 C -0.043 4.043 8 N -0.947 5.947 9 Si 1.108 2.892 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.270 1.270 13 N -0.516 5.516 14 C 0.056 3.944 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.072 3.928 18 N -0.676 5.676 19 C 0.078 3.922 20 C -0.121 4.121 21 C -0.144 4.144 22 C 0.085 3.915 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.055 0.945 26 H -0.018 1.018 27 H -0.012 1.012 28 H 0.252 0.748 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.346 0.654 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.318 5.435 18.113 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.013 4.013 3 H 0.043 0.957 4 C -0.014 4.014 5 C -0.631 4.631 6 H 0.080 0.920 7 C -0.239 4.239 8 N -0.586 5.586 9 Si 0.930 3.070 10 H -0.213 1.213 11 H -0.195 1.195 12 H -0.196 1.196 13 N -0.241 5.241 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.183 4.183 17 C -0.057 4.057 18 N -0.305 5.305 19 C -0.051 4.051 20 C -0.123 4.123 21 C -0.201 4.201 22 C -0.043 4.043 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.000 1.000 27 H 0.006 0.994 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.035 5.171 17.185 18.062 hybrid contribution -1.385 0.021 -0.083 1.388 sum -3.420 5.193 17.103 18.198 Atomic orbital electron populations 1.22002 0.94194 1.02034 1.01922 1.21559 0.94403 0.94206 0.91133 0.95734 1.19147 0.95924 0.94154 0.92168 1.22577 0.93797 1.30314 1.16379 0.92009 1.27208 1.10550 0.93259 0.92901 1.70899 1.10318 1.39045 1.38334 0.83054 0.70166 0.77017 0.76735 1.21307 1.19535 1.19566 1.65121 1.01215 1.55106 1.02653 1.22686 0.95050 1.00550 0.88846 1.22614 0.96561 0.95949 0.95856 1.21610 1.00895 0.94530 1.01258 1.22437 0.90693 0.98789 0.93748 1.63276 1.01622 1.53781 1.11806 1.21577 0.94291 1.01342 0.87908 1.21782 0.98713 0.96388 0.95382 1.22260 1.00345 0.95402 1.02062 1.21791 0.91413 0.97347 0.93708 0.90729 0.92735 0.92602 0.99977 0.99386 0.93850 0.91628 0.90573 0.92197 0.91452 0.93631 0.89575 0.89561 0.83800 0.92704 0.90432 0.92672 0.90370 0.94040 0.93156 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.29 71.99 0.60 -4.24 16 2 C 0.10 3.97 2.05 44.92 0.09 4.06 16 3 H 0.02 1.06 7.23 -2.39 -0.02 1.04 16 4 C 0.02 1.25 4.01 29.85 0.12 1.37 16 5 C -0.59 -33.79 8.23 25.60 0.21 -33.58 16 6 H 0.06 3.38 4.81 -2.91 -0.01 3.37 16 7 C -0.04 -2.54 5.46 84.66 0.46 -2.08 16 8 N -0.95 -60.66 13.65 21.45 0.29 -60.37 16 9 Si 1.11 51.77 29.90 68.60 2.05 53.83 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 13 N -0.52 -19.48 4.67 -863.96 -4.04 -23.52 16 14 C 0.06 1.58 4.15 85.15 0.35 1.93 16 15 C -0.11 -2.60 1.06 -51.33 -0.05 -2.66 16 16 C -0.13 -3.07 8.34 71.98 0.60 -2.47 16 17 C 0.07 1.37 6.34 85.22 0.54 1.91 16 18 N -0.68 -13.05 7.07 -507.25 -3.58 -16.64 16 19 C 0.08 1.82 6.00 84.62 0.51 2.32 16 20 C -0.12 -3.34 1.27 -52.60 -0.07 -3.40 16 21 C -0.14 -3.83 7.18 71.98 0.52 -3.31 16 22 C 0.09 3.16 4.12 84.61 0.35 3.51 16 23 H 0.07 2.03 6.27 -2.39 -0.01 2.02 16 24 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H -0.02 -1.01 8.11 -2.39 -0.02 -1.03 16 27 H -0.01 -0.72 7.79 -2.39 -0.02 -0.74 16 28 H 0.25 16.46 7.18 -92.71 -0.67 15.79 16 29 H 0.07 1.74 4.05 -2.39 -0.01 1.73 16 30 H 0.08 2.10 8.13 -2.39 -0.02 2.08 16 31 H 0.06 1.27 6.09 -2.39 -0.01 1.26 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.43 6.57 -2.39 -0.02 1.41 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.66 6.38 -2.38 -0.02 1.64 16 36 H 0.35 5.54 8.46 -89.69 -0.76 4.78 16 37 H 0.05 1.26 7.34 -2.38 -0.02 1.25 16 38 H 0.08 1.81 7.98 -2.39 -0.02 1.79 16 39 H 0.05 1.51 4.70 -2.39 -0.01 1.50 16 40 H 0.08 1.84 6.21 -2.39 -0.01 1.82 16 41 H 0.04 1.19 8.03 -2.39 -0.02 1.17 16 42 H 0.05 2.04 7.47 -2.39 -0.02 2.02 16 43 H 0.05 2.21 4.71 -2.38 -0.01 2.19 16 Total: -1.00 -65.97 303.16 -0.70 -66.68 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.35 Total: 16.65 kcal Atomic # 6 Polarization: -40.86 SS G_CDS: 4.23 Total: -36.63 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -7.33 Total: -100.52 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.83 kcal Total: -65.97 -0.70 -66.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705659327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.602 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds