Wall clock time and date at job start Mon Mar 30 2020 04:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 5 5 H 1.08006 * 119.99850 * 119.99913 * 4 2 1 6 6 C 1.37875 * 119.99836 * 300.00378 * 4 2 1 7 7 N 1.31512 * 119.99942 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99860 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47256 * 59.99704 * 8 6 4 10 10 H 1.48496 * 109.46921 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47113 * 299.99582 * 8 6 4 12 12 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 13 13 C 1.46902 * 110.99573 * 84.99799 * 12 2 1 14 14 C 1.53788 * 109.46693 * 179.97438 * 13 12 2 15 15 C 1.52458 * 108.86346 * 299.34852 * 14 13 12 16 16 C 1.52176 * 112.59466 * 188.77336 * 15 14 13 17 17 C 1.52316 * 112.47767 * 45.55971 * 16 15 14 18 18 N 1.45859 * 112.18125 * 312.60850 * 17 16 15 19 19 C 1.45797 * 114.01482 * 289.77447 * 18 17 16 20 20 C 1.52226 * 112.50585 * 71.08055 * 19 18 17 21 21 C 1.52131 * 112.73853 * 46.31584 * 20 19 18 22 22 C 1.46476 * 111.96567 * 58.31310 * 18 17 16 23 23 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 25 25 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 26 26 H 0.97007 * 119.99842 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00309 * 321.04211 * 12 2 1 28 28 H 1.08990 * 109.47358 * 299.99539 * 13 12 2 29 29 H 1.09004 * 109.47457 * 60.00221 * 13 12 2 30 30 H 1.09738 * 109.01038 * 310.09896 * 15 14 13 31 31 H 1.09679 * 109.13771 * 67.25132 * 15 14 13 32 32 H 1.08667 * 110.95170 * 280.82135 * 16 15 14 33 33 H 1.10536 * 108.06674 * 164.58381 * 16 15 14 34 34 H 1.09602 * 109.13503 * 191.29875 * 17 16 15 35 35 H 1.09618 * 109.12483 * 73.85340 * 17 16 15 36 36 H 1.09681 * 109.19253 * 192.34304 * 19 18 17 37 37 H 1.09649 * 109.26248 * 309.71293 * 19 18 17 38 38 H 1.10592 * 107.87119 * 165.44872 * 20 19 18 39 39 H 1.08702 * 110.82658 * 281.33743 * 20 19 18 40 40 H 1.09674 * 109.28287 * 193.58545 * 21 20 19 41 41 H 1.09716 * 109.21764 * 76.26500 * 21 20 19 42 42 H 1.08889 * 109.91054 * 175.70151 * 22 18 17 43 43 H 1.08870 * 109.93930 * 54.67726 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8270 -0.4201 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0197 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5988 -0.5366 -3.5805 15 6 3.9971 -1.0664 -3.2835 16 6 4.6759 -1.6478 -4.5152 17 6 4.5268 -0.7534 -5.7390 18 7 3.1529 -0.3007 -5.9261 19 6 2.2330 -1.3525 -6.3422 20 6 1.9436 -2.3481 -5.2276 21 6 1.6322 -1.6715 -3.9011 22 6 2.6556 0.4363 -4.7620 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 0.7095 1.1616 3.4845 27 1 1.4496 -1.4979 -1.4101 28 1 1.0870 0.6163 -2.5525 29 1 2.7588 1.0464 -2.1182 30 1 4.6118 -0.2494 -2.8848 31 1 3.9317 -1.8389 -2.5077 32 1 4.3113 -2.6501 -4.7231 33 1 5.7548 -1.7481 -4.2967 34 1 4.8512 -1.3050 -6.6288 35 1 5.1831 0.1177 -5.6293 36 1 1.2904 -0.8980 -6.6707 37 1 2.6588 -1.8870 -7.1998 38 1 1.0589 -2.9418 -5.5241 39 1 2.7617 -3.0556 -5.1194 40 1 1.6731 -2.4157 -3.0965 41 1 0.6102 -1.2733 -3.9300 42 1 1.6583 0.8229 -4.9662 43 1 3.3297 1.2583 -4.5273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705814350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:01 Heat of formation + Delta-G solvation = -12.293326 kcal Electronic energy + Delta-G solvation = -19969.899925 eV Core-core repulsion = 17241.752542 eV Total energy + Delta-G solvation = -2728.147383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51976 -36.21753 -33.70569 -32.96660 -31.81859 -30.88324 -28.03315 -26.23489 -25.15339 -24.13051 -23.67534 -21.36976 -20.66068 -20.02064 -18.24628 -16.37778 -15.76978 -15.01946 -14.98070 -14.65407 -14.34958 -14.17669 -13.55143 -13.28160 -13.16751 -12.85715 -12.57304 -12.34595 -11.88108 -11.66530 -11.46627 -11.30238 -11.24631 -10.91482 -10.89914 -10.80793 -10.78991 -10.54985 -10.24960 -10.11911 -10.08464 -9.68233 -9.62466 -8.97032 -8.33614 -7.92316 -7.15353 -5.95897 -3.99084 3.35354 3.39253 3.42604 4.05728 4.45708 4.73382 4.78027 5.01755 5.06468 5.10404 5.23257 5.27969 5.35489 5.42264 5.50948 5.57478 5.62102 5.69062 5.86891 5.91684 5.94141 5.98082 6.06756 6.11935 6.25757 6.30042 6.37503 6.41366 6.52822 6.67341 6.72260 6.75639 6.86724 7.13377 7.20466 7.34060 7.41915 7.76353 7.91436 8.31708 8.58819 8.66781 9.07896 9.66190 11.11062 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037347 B = 0.005051 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.549073 B = 5541.892304 C = 5774.481273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.681 5.681 13 C 0.072 3.928 14 C -0.082 4.082 15 C -0.091 4.091 16 C -0.154 4.154 17 C 0.069 3.931 18 N -0.549 5.549 19 C 0.070 3.930 20 C -0.151 4.151 21 C -0.103 4.103 22 C 0.074 3.926 23 H 0.026 0.974 24 H 0.088 0.912 25 H 0.004 0.996 26 H 0.259 0.741 27 H 0.323 0.677 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 -3.578 -16.499 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.311 5.311 13 C -0.059 4.059 14 C -0.084 4.084 15 C -0.129 4.129 16 C -0.193 4.193 17 C -0.059 4.059 18 N -0.270 5.270 19 C -0.058 4.058 20 C -0.190 4.190 21 C -0.141 4.141 22 C -0.055 4.055 23 H 0.045 0.955 24 H 0.106 0.894 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.853 -3.068 -16.564 17.281 hybrid contribution -0.789 -0.949 1.452 1.906 sum 3.063 -4.016 -15.112 15.934 Atomic orbital electron populations 1.22420 1.00887 0.99018 1.00387 1.19149 0.89450 0.94374 0.86678 0.95046 1.21126 1.30102 1.12348 0.89678 0.92127 1.24949 0.95382 0.95219 0.99002 1.69877 1.37371 1.23204 1.23360 0.86582 0.79158 0.79591 0.82152 1.20341 1.21481 1.20436 1.60821 1.57845 1.09018 1.03404 1.22083 0.97960 0.95468 0.90369 1.20987 0.95696 0.96025 0.95709 1.21133 0.94087 1.01413 0.96237 1.22080 1.00766 0.99723 0.96781 1.21737 0.89247 0.98355 0.96569 1.60225 1.02167 1.27642 1.36928 1.21698 0.96352 0.91537 0.96254 1.21987 1.01846 0.98795 0.96332 1.21300 0.98383 0.97882 0.96508 1.21973 1.00485 0.95402 0.87611 0.95525 0.89355 0.97717 0.93074 0.86010 0.96523 0.91866 0.92394 0.90688 0.92005 0.92735 0.91702 0.91265 0.91400 0.91597 0.92787 0.91703 0.91483 0.92755 0.90999 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.32 2.57 -68.86 -0.18 5.14 16 3 H 0.03 0.88 7.80 -51.93 -0.40 0.47 16 4 C -0.49 -13.73 8.84 -34.44 -0.30 -14.04 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.91 11.32 55.43 0.63 -25.28 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.68 -14.19 5.57 -107.50 -0.60 -14.79 16 13 C 0.07 1.27 4.30 -3.41 -0.01 1.25 16 14 C -0.08 -1.17 0.54 -154.56 -0.08 -1.25 16 15 C -0.09 -1.31 4.40 -27.43 -0.12 -1.43 16 16 C -0.15 -1.83 5.14 -27.50 -0.14 -1.97 16 17 C 0.07 0.76 5.78 -4.74 -0.03 0.74 16 18 N -0.55 -6.52 4.78 -236.56 -1.13 -7.66 16 19 C 0.07 0.75 5.76 -4.82 -0.03 0.73 16 20 C -0.15 -1.70 5.12 -27.57 -0.14 -1.84 16 21 C -0.10 -1.39 4.15 -27.44 -0.11 -1.50 16 22 C 0.07 0.95 4.90 -3.98 -0.02 0.93 16 23 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 24 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 25 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.32 6.49 6.66 -39.29 -0.26 6.23 16 28 H 0.02 0.30 7.43 -51.93 -0.39 -0.08 16 29 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.06 0.89 8.15 -51.51 -0.42 0.47 16 31 H 0.07 1.23 7.85 -51.54 -0.40 0.83 16 32 H 0.06 0.72 5.67 -52.12 -0.30 0.43 16 33 H 0.05 0.61 8.27 -51.05 -0.42 0.19 16 34 H 0.06 0.64 8.11 -51.59 -0.42 0.22 16 35 H 0.07 0.75 8.19 -51.58 -0.42 0.33 16 36 H 0.07 0.71 8.20 -51.54 -0.42 0.29 16 37 H 0.07 0.63 8.11 -51.56 -0.42 0.21 16 38 H 0.05 0.56 8.27 -51.02 -0.42 0.14 16 39 H 0.06 0.74 5.71 -52.10 -0.30 0.44 16 40 H 0.07 0.98 6.95 -51.55 -0.36 0.63 16 41 H 0.05 0.75 8.15 -51.52 -0.42 0.33 16 42 H 0.07 0.92 8.13 -51.99 -0.42 0.50 16 43 H 0.07 0.97 8.13 -52.00 -0.42 0.55 16 LS Contribution 313.88 15.07 4.73 4.73 Total: -1.00 -27.90 313.88 -10.03 -37.94 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.71 Total: 3.96 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -0.93 Total: -15.55 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -1.10 Total: -47.72 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.90 -10.03 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705814350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.645 kcal (2) G-P(sol) polarization free energy of solvation -27.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds