Wall clock time and date at job start Mon Mar 30 2020 03:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47239 * 2 1 4 4 C 1.53004 * 109.47054 * 240.00019 * 2 1 3 5 5 C 1.50702 * 109.47367 * 175.00095 * 4 2 1 6 6 H 1.07998 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00028 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99655 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47565 * 59.99906 * 9 7 5 11 11 H 1.48501 * 109.47073 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47283 * 299.99539 * 9 7 5 13 13 N 1.46898 * 109.47265 * 120.00279 * 2 1 3 14 14 C 1.47901 * 111.00202 * 58.39442 * 13 2 1 15 15 C 1.55027 * 104.86249 * 213.76817 * 14 13 2 16 16 C 1.54499 * 101.59475 * 36.42220 * 15 14 13 17 17 C 1.47605 * 111.00139 * 297.57825 * 13 2 1 18 18 C 1.52335 * 110.17170 * 206.50784 * 16 15 14 19 19 C 1.53266 * 109.21824 * 293.49983 * 18 16 15 20 20 C 1.53040 * 109.17512 * 303.49296 * 19 18 16 21 21 N 1.46858 * 109.66559 * 59.74234 * 20 19 18 22 22 C 1.46982 * 111.11817 * 297.72693 * 21 20 19 23 23 H 1.08996 * 109.47415 * 173.92568 * 1 2 3 24 24 H 1.09000 * 109.46705 * 293.92425 * 1 2 3 25 25 H 1.08999 * 109.47203 * 53.91571 * 1 2 3 26 26 H 1.08998 * 109.47160 * 295.00260 * 4 2 1 27 27 H 1.08997 * 109.47133 * 54.99835 * 4 2 1 28 28 H 0.97005 * 119.99396 * 179.97438 * 8 7 5 29 29 H 1.09002 * 110.35531 * 332.60848 * 14 13 2 30 30 H 1.08995 * 110.36188 * 94.91902 * 14 13 2 31 31 H 1.08994 * 110.99998 * 278.33696 * 15 14 13 32 32 H 1.08998 * 111.03029 * 154.51303 * 15 14 13 33 33 H 1.09001 * 109.92212 * 243.04845 * 17 13 2 34 34 H 1.09010 * 109.91546 * 4.14083 * 17 13 2 35 35 H 1.08997 * 109.51619 * 53.42442 * 18 16 15 36 36 H 1.08997 * 109.51506 * 173.57984 * 18 16 15 37 37 H 1.08992 * 109.52157 * 183.58057 * 19 18 16 38 38 H 1.09000 * 109.57082 * 63.42745 * 19 18 16 39 39 H 1.09003 * 109.43876 * 299.68367 * 20 19 18 40 40 H 1.09003 * 109.41141 * 179.78042 * 20 19 18 41 41 H 1.00902 * 110.99839 * 173.68679 * 21 20 19 42 42 H 1.09002 * 109.44782 * 300.45525 * 22 21 20 43 43 H 1.09002 * 109.42220 * 180.52720 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0856 -0.5397 7 6 4.2303 -1.1927 -2.3585 8 7 3.5762 -1.8370 -3.3001 9 14 6.0918 -1.0603 -2.4375 10 1 6.6845 -1.6864 -1.2284 11 1 6.5867 -1.7594 -3.6506 12 1 6.4843 0.3707 -2.4969 13 7 2.0197 -0.6925 1.1994 14 6 1.5142 -2.0814 1.2530 15 6 1.3177 -2.3751 2.7625 16 6 0.8244 -1.0067 3.2834 17 6 1.5946 0.0095 2.4262 18 6 1.1784 -0.8467 4.7564 19 6 0.3804 -1.8633 5.5803 20 6 -1.1132 -1.6677 5.3102 21 7 -1.3867 -1.8640 3.8807 22 6 -0.6760 -0.8699 3.0641 23 1 -0.3634 -1.0218 -0.1087 24 1 -0.3633 0.4168 0.9394 25 1 -0.3633 0.6053 -0.8305 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2618 -2.1370 28 1 4.0605 -2.2431 -4.0359 29 1 0.5640 -2.1598 0.7247 30 1 2.2448 -2.7678 0.8251 31 1 2.2607 -2.6550 3.2319 32 1 0.5632 -3.1466 2.9160 33 1 2.4682 0.3680 2.9707 34 1 0.9477 0.8483 2.1688 35 1 2.2451 -1.0222 4.8957 36 1 0.9290 0.1628 5.0832 37 1 0.5818 -1.7110 6.6406 38 1 0.6727 -2.8740 5.2956 39 1 -1.4052 -0.6583 5.6001 40 1 -1.6843 -2.3916 5.8915 41 1 -2.3784 -1.8414 3.6959 42 1 -0.9950 0.1317 3.3525 43 1 -0.9054 -1.0348 2.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709902348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:58 Heat of formation + Delta-G solvation = -3.077873 kcal Electronic energy + Delta-G solvation = -20101.023833 eV Core-core repulsion = 17373.276062 eV Total energy + Delta-G solvation = -2727.747771 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.27264 -37.20541 -33.88067 -32.33231 -31.56753 -29.76639 -28.73009 -27.22901 -24.91796 -23.95773 -23.00604 -21.88838 -21.05600 -18.79963 -18.09023 -16.52543 -16.09184 -15.49103 -15.06170 -14.53702 -14.36187 -14.24493 -13.77114 -13.42860 -13.04562 -12.80917 -12.58857 -12.42499 -11.96423 -11.65797 -11.55980 -11.30782 -11.22851 -11.13709 -10.72815 -10.69154 -10.59442 -10.38259 -10.18306 -10.08475 -10.00005 -9.82199 -9.06664 -8.95938 -8.51750 -8.20814 -7.34797 -5.83817 -3.81450 3.44614 3.47886 3.52062 4.09886 4.60582 4.70403 4.72761 4.80270 4.89197 5.04540 5.30243 5.33539 5.48553 5.53138 5.55320 5.62940 5.69635 5.74837 5.80932 5.81067 5.90411 5.95576 5.99704 6.08287 6.09863 6.19402 6.30772 6.43682 6.50996 6.55057 6.60005 6.79219 6.84789 6.94360 7.05008 7.28062 7.60007 7.77673 7.93371 8.09698 8.18998 8.64078 9.24537 9.80046 11.28208 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036602 B = 0.005421 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.806643 B = 5163.510838 C = 5466.082430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.081 3.919 3 H 0.067 0.933 4 C 0.031 3.969 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.500 5.500 14 C 0.047 3.953 15 C -0.111 4.111 16 C -0.075 4.075 17 C 0.048 3.952 18 C -0.104 4.104 19 C -0.117 4.117 20 C 0.059 3.941 21 N -0.686 5.686 22 C 0.067 3.933 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.019 0.981 27 H 0.016 0.984 28 H 0.257 0.743 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.340 0.660 42 H 0.025 0.975 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.798 1.166 16.317 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.006 4.006 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.223 5.223 14 C -0.081 4.081 15 C -0.150 4.150 16 C -0.076 4.076 17 C -0.081 4.081 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.071 4.071 21 N -0.317 5.317 22 C -0.062 4.062 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.157 0.843 42 H 0.043 0.957 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.727 0.597 16.033 18.264 hybrid contribution -0.410 0.925 0.043 1.012 sum -9.137 1.522 16.077 18.554 Atomic orbital electron populations 1.22695 1.00125 1.01386 1.00505 1.22056 0.89822 0.98421 0.92478 0.91469 1.19165 0.96327 0.95347 0.89802 1.21148 0.91842 1.32940 1.06922 0.92208 1.25002 0.97970 0.95905 0.96003 1.69960 1.35261 1.37000 1.12341 0.86693 0.86444 0.77960 0.77045 1.20373 1.21696 1.20547 1.63805 1.56751 1.01305 1.00458 1.23034 0.98971 0.91234 0.94818 1.22676 1.00545 0.95931 0.95802 1.21257 0.93984 0.97307 0.95075 1.22835 0.97501 0.95777 0.91978 1.21457 1.00125 0.98502 0.94095 1.21608 0.94290 1.00608 0.98959 1.21897 0.97139 0.98919 0.89123 1.60289 1.13690 1.52210 1.05497 1.21992 0.93668 0.92237 0.98266 0.92656 0.93662 0.92791 0.96307 0.96549 0.93327 0.93596 0.90240 0.91651 0.90243 0.91276 0.93363 0.91398 0.92696 0.92030 0.90921 0.95702 0.91230 0.84297 0.95720 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 7.48 37.16 0.28 -2.97 16 2 C 0.08 1.67 2.16 -67.71 -0.15 1.53 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.03 0.79 4.35 -27.88 -0.12 0.67 16 5 C -0.49 -13.99 8.84 -34.44 -0.30 -14.29 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.50 -9.72 4.91 -223.46 -1.10 -10.82 16 14 C 0.05 0.86 4.82 -2.20 -0.01 0.85 16 15 C -0.11 -1.67 5.07 -24.87 -0.13 -1.79 16 16 C -0.07 -1.00 0.55 -154.11 -0.09 -1.09 16 17 C 0.05 0.76 5.56 -3.10 -0.02 0.74 16 18 C -0.10 -1.20 4.62 -26.93 -0.12 -1.32 16 19 C -0.12 -1.18 5.90 -26.57 -0.16 -1.34 16 20 C 0.06 0.57 6.52 -3.83 -0.02 0.54 16 21 N -0.69 -7.47 6.20 -114.15 -0.71 -8.18 16 22 C 0.07 0.84 4.37 -4.16 -0.02 0.82 16 23 H 0.05 0.96 5.92 -51.93 -0.31 0.66 16 24 H 0.04 0.68 4.57 -51.93 -0.24 0.44 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.02 0.51 7.00 -51.93 -0.36 0.15 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.05 0.85 5.04 -51.93 -0.26 0.59 16 30 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 31 H 0.06 0.99 7.96 -51.93 -0.41 0.57 16 32 H 0.08 1.16 7.47 -51.93 -0.39 0.77 16 33 H 0.07 1.09 7.80 -51.93 -0.41 0.69 16 34 H 0.05 0.74 5.92 -51.92 -0.31 0.43 16 35 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 39 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.34 3.13 8.90 -39.29 -0.35 2.78 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 1.14 4.93 -51.93 -0.26 0.88 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -30.11 311.40 -9.80 -39.90 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.45 Total: 0.19 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.96 Total: -16.28 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -1.07 Total: -45.90 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.11 -9.80 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709902348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.825 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds