Wall clock time and date at job start Mon Mar 30 2020 03:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47239 * 2 1 4 4 C 1.53004 * 109.47054 * 240.00019 * 2 1 3 5 5 C 1.50702 * 109.47367 * 175.00095 * 4 2 1 6 6 H 1.07998 * 119.99981 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00028 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99655 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47565 * 59.99906 * 9 7 5 11 11 H 1.48501 * 109.47073 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47283 * 299.99539 * 9 7 5 13 13 N 1.46898 * 109.47265 * 120.00279 * 2 1 3 14 14 C 1.47901 * 111.00202 * 58.39442 * 13 2 1 15 15 C 1.55027 * 104.86249 * 213.76817 * 14 13 2 16 16 C 1.54499 * 101.59475 * 36.42220 * 15 14 13 17 17 C 1.47605 * 111.00139 * 297.57825 * 13 2 1 18 18 C 1.52335 * 110.17170 * 206.50784 * 16 15 14 19 19 C 1.53266 * 109.21824 * 293.49983 * 18 16 15 20 20 C 1.53040 * 109.17512 * 303.49296 * 19 18 16 21 21 N 1.46858 * 109.66559 * 59.74234 * 20 19 18 22 22 C 1.46982 * 111.11817 * 297.72693 * 21 20 19 23 23 H 1.08996 * 109.47415 * 173.92568 * 1 2 3 24 24 H 1.09000 * 109.46705 * 293.92425 * 1 2 3 25 25 H 1.08999 * 109.47203 * 53.91571 * 1 2 3 26 26 H 1.08998 * 109.47160 * 295.00260 * 4 2 1 27 27 H 1.08997 * 109.47133 * 54.99835 * 4 2 1 28 28 H 0.97005 * 119.99396 * 179.97438 * 8 7 5 29 29 H 1.09002 * 110.35531 * 332.60848 * 14 13 2 30 30 H 1.08995 * 110.36188 * 94.91902 * 14 13 2 31 31 H 1.08994 * 110.99998 * 278.33696 * 15 14 13 32 32 H 1.08998 * 111.03029 * 154.51303 * 15 14 13 33 33 H 1.09001 * 109.92212 * 243.04845 * 17 13 2 34 34 H 1.09010 * 109.91546 * 4.14083 * 17 13 2 35 35 H 1.08997 * 109.51619 * 53.42442 * 18 16 15 36 36 H 1.08997 * 109.51506 * 173.57984 * 18 16 15 37 37 H 1.08992 * 109.52157 * 183.58057 * 19 18 16 38 38 H 1.09000 * 109.57082 * 63.42745 * 19 18 16 39 39 H 1.09003 * 109.43876 * 299.68367 * 20 19 18 40 40 H 1.09003 * 109.41141 * 179.78042 * 20 19 18 41 41 H 1.00902 * 110.99839 * 173.68679 * 21 20 19 42 42 H 1.09002 * 109.44782 * 300.45525 * 22 21 20 43 43 H 1.09002 * 109.42220 * 180.52720 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0856 -0.5397 7 6 4.2303 -1.1927 -2.3585 8 7 3.5762 -1.8370 -3.3001 9 14 6.0918 -1.0603 -2.4375 10 1 6.6845 -1.6864 -1.2284 11 1 6.5867 -1.7594 -3.6506 12 1 6.4843 0.3707 -2.4969 13 7 2.0197 -0.6925 1.1994 14 6 1.5142 -2.0814 1.2530 15 6 1.3177 -2.3751 2.7625 16 6 0.8244 -1.0067 3.2834 17 6 1.5946 0.0095 2.4262 18 6 1.1784 -0.8467 4.7564 19 6 0.3804 -1.8633 5.5803 20 6 -1.1132 -1.6677 5.3102 21 7 -1.3867 -1.8640 3.8807 22 6 -0.6760 -0.8699 3.0641 23 1 -0.3634 -1.0218 -0.1087 24 1 -0.3633 0.4168 0.9394 25 1 -0.3633 0.6053 -0.8305 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2618 -2.1370 28 1 4.0605 -2.2431 -4.0359 29 1 0.5640 -2.1598 0.7247 30 1 2.2448 -2.7678 0.8251 31 1 2.2607 -2.6550 3.2319 32 1 0.5632 -3.1466 2.9160 33 1 2.4682 0.3680 2.9707 34 1 0.9477 0.8483 2.1688 35 1 2.2451 -1.0222 4.8957 36 1 0.9290 0.1628 5.0832 37 1 0.5818 -1.7110 6.6406 38 1 0.6727 -2.8740 5.2956 39 1 -1.4052 -0.6583 5.6001 40 1 -1.6843 -2.3916 5.8915 41 1 -2.3784 -1.8414 3.6959 42 1 -0.9950 0.1317 3.3525 43 1 -0.9054 -1.0348 2.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709902348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:57 Heat of formation + Delta-G solvation = -23.805110 kcal Electronic energy + Delta-G solvation = -20101.922634 eV Core-core repulsion = 17373.276062 eV Total energy + Delta-G solvation = -2728.646571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47788 -38.43674 -35.49895 -34.10065 -32.63511 -30.99290 -30.27642 -29.06162 -26.11332 -25.17666 -24.62054 -23.32384 -22.16825 -20.29685 -19.25935 -18.31499 -17.43613 -16.96771 -16.48846 -16.22594 -15.54478 -15.28454 -15.04353 -14.55233 -14.40279 -14.19912 -13.88932 -13.65786 -13.47753 -13.33968 -13.09423 -12.91497 -12.62214 -12.58115 -12.35037 -12.21031 -12.07147 -11.80533 -11.62130 -11.33759 -11.23533 -11.09979 -10.99970 -10.94872 -10.47592 -9.33489 -8.85841 -8.09850 -6.15079 1.41185 1.44411 1.51907 2.47556 3.19868 3.24654 3.33348 3.69502 3.77629 3.86695 4.18748 4.22384 4.27736 4.37014 4.40317 4.45016 4.53605 4.55905 4.62235 4.67460 4.73174 4.83783 4.91509 4.94544 4.99494 5.09704 5.15872 5.18006 5.19523 5.24746 5.27604 5.36471 5.46819 5.50179 5.52726 5.72379 5.90026 6.10141 6.34357 6.39331 6.54005 6.57303 6.98472 7.50785 9.02036 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.036602 B = 0.005421 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.806643 B = 5163.510838 C = 5466.082430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.089 3.911 3 H 0.061 0.939 4 C 0.038 3.962 5 C -0.502 4.502 6 H 0.056 0.944 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.524 5.524 14 C 0.050 3.950 15 C -0.098 4.098 16 C -0.066 4.066 17 C 0.049 3.951 18 C -0.102 4.102 19 C -0.115 4.115 20 C 0.059 3.941 21 N -0.694 5.694 22 C 0.072 3.928 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.056 0.944 26 H -0.006 1.006 27 H -0.010 1.010 28 H 0.259 0.741 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.085 0.915 41 H 0.350 0.650 42 H 0.034 0.966 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 1.858 18.605 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.020 4.020 3 H 0.079 0.921 4 C 0.001 3.999 5 C -0.541 4.541 6 H 0.074 0.926 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.248 5.248 14 C -0.078 4.078 15 C -0.136 4.136 16 C -0.067 4.067 17 C -0.079 4.079 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.070 4.070 21 N -0.326 5.326 22 C -0.057 4.057 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.169 0.831 42 H 0.052 0.948 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.152 1.298 18.340 20.538 hybrid contribution -0.286 0.694 -0.674 1.008 sum -9.437 1.992 17.667 20.128 Atomic orbital electron populations 1.22536 0.97249 1.01461 1.02127 1.21747 0.92076 0.97128 0.91010 0.92103 1.19010 0.95234 0.94185 0.91513 1.21459 0.93309 1.32595 1.06713 0.92605 1.25861 1.02983 0.95556 0.95665 1.70092 1.37186 1.37931 1.12991 0.85616 0.80465 0.78413 0.77179 1.19834 1.21156 1.19430 1.63631 1.57892 1.01905 1.01334 1.22906 0.97437 0.90276 0.97179 1.22555 1.00714 0.97293 0.93016 1.21186 0.94550 0.94987 0.96013 1.22871 0.98137 0.96300 0.90632 1.21440 1.00214 0.99699 0.92618 1.21608 0.94421 0.99403 0.99819 1.21956 0.96901 0.99861 0.88328 1.60247 1.14453 1.51646 1.06214 1.21845 0.92866 0.93177 0.97856 0.93105 0.90911 0.92471 0.98806 0.99162 0.93256 0.93951 0.94002 0.91928 0.89572 0.91170 0.92508 0.91834 0.91597 0.90075 0.91963 0.94966 0.89671 0.83077 0.94825 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.95 7.48 71.98 0.54 -5.41 16 2 C 0.09 3.75 2.16 44.92 0.10 3.85 16 3 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.04 2.03 4.35 29.85 0.13 2.16 16 5 C -0.50 -29.44 8.84 25.60 0.23 -29.22 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -58.92 13.29 21.45 0.28 -58.64 16 9 Si 0.96 46.53 29.54 68.60 2.03 48.56 16 10 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.52 -20.52 4.91 -860.89 -4.23 -24.75 16 14 C 0.05 1.87 4.82 86.80 0.42 2.29 16 15 C -0.10 -2.85 5.07 31.80 0.16 -2.69 16 16 C -0.07 -1.65 0.55 -51.92 -0.03 -1.67 16 17 C 0.05 1.47 5.56 86.38 0.48 1.95 16 18 C -0.10 -2.07 4.62 30.46 0.14 -1.93 16 19 C -0.11 -1.96 5.90 30.70 0.18 -1.78 16 20 C 0.06 0.92 6.52 86.32 0.56 1.49 16 21 N -0.69 -13.16 6.20 -515.06 -3.19 -16.35 16 22 C 0.07 1.61 4.37 86.04 0.38 1.98 16 23 H 0.05 1.77 5.92 -2.39 -0.01 1.76 16 24 H 0.07 2.06 4.57 -2.39 -0.01 2.05 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H -0.01 -0.37 7.00 -2.39 -0.02 -0.39 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 29 H 0.04 1.61 5.04 -2.39 -0.01 1.60 16 30 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 31 H 0.06 1.85 7.96 -2.39 -0.02 1.84 16 32 H 0.09 2.42 7.47 -2.39 -0.02 2.40 16 33 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 34 H 0.06 1.62 5.92 -2.38 -0.01 1.60 16 35 H 0.06 1.35 8.06 -2.39 -0.02 1.34 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.21 7.56 -2.39 -0.02 1.19 16 39 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.35 5.47 8.90 -89.69 -0.80 4.67 16 42 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 1.74 4.93 -2.39 -0.01 1.73 16 Total: -1.00 -65.84 311.40 -1.18 -67.02 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.18 Total: 12.95 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 3.75 Total: -28.80 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -7.13 Total: -99.74 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -65.84 -1.18 -67.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709902348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.217 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds