Wall clock time and date at job start Mon Mar 30 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47207 * 2 1 4 4 C 1.53004 * 109.47105 * 240.00851 * 2 1 3 5 5 C 1.50699 * 109.47286 * 160.54172 * 4 2 1 6 6 H 1.07997 * 120.00000 * 353.96894 * 5 4 2 7 7 C 1.37875 * 119.99656 * 173.97263 * 5 4 2 8 8 N 1.31520 * 120.00318 * 6.73255 * 7 5 4 9 9 Si 1.86803 * 119.99930 * 186.72774 * 7 5 4 10 10 H 1.48500 * 109.46622 * 5.03186 * 9 7 5 11 11 H 1.48498 * 109.47138 * 125.03184 * 9 7 5 12 12 H 1.48501 * 109.47254 * 245.03682 * 9 7 5 13 13 N 1.46897 * 109.47577 * 120.00591 * 2 1 3 14 14 C 1.47587 * 111.00005 * 183.35933 * 13 2 1 15 15 C 1.54646 * 107.20857 * 125.05539 * 14 13 2 16 16 C 1.54262 * 102.33255 * 21.65785 * 15 14 13 17 17 H 1.08998 * 109.52250 * 78.18812 * 16 15 14 18 18 C 1.48836 * 111.00130 * 303.75489 * 13 2 1 19 19 H 1.08998 * 111.70951 * 91.06613 * 18 13 2 20 20 C 1.53241 * 106.61597 * 328.02461 * 18 13 2 21 21 C 1.52758 * 110.48997 * 196.77225 * 20 18 13 22 22 C 1.53331 * 108.37116 * 59.92764 * 21 20 18 23 23 N 1.44670 * 112.62566 * 200.34844 * 16 15 14 24 24 C 1.46894 * 111.00271 * 296.59892 * 23 16 15 25 25 H 1.09000 * 109.46490 * 290.31888 * 1 2 3 26 26 H 1.08991 * 109.47523 * 50.31911 * 1 2 3 27 27 H 1.08999 * 109.46650 * 170.32535 * 1 2 3 28 28 H 1.09004 * 109.46705 * 280.54489 * 4 2 1 29 29 H 1.09002 * 109.46884 * 40.54216 * 4 2 1 30 30 H 0.97000 * 119.99691 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.89359 * 5.65493 * 14 13 2 32 32 H 1.09005 * 109.88992 * 244.45342 * 14 13 2 33 33 H 1.09002 * 110.83163 * 263.44058 * 15 14 13 34 34 H 1.09000 * 110.83286 * 139.87246 * 15 14 13 35 35 H 1.08999 * 109.32185 * 76.49043 * 20 18 13 36 36 H 1.08997 * 109.25633 * 317.00693 * 20 18 13 37 37 H 1.08996 * 109.69009 * 300.20153 * 21 20 18 38 38 H 1.08990 * 109.69406 * 179.65725 * 21 20 18 39 39 H 1.08999 * 109.70957 * 56.64608 * 22 21 20 40 40 H 1.09005 * 109.70663 * 177.22780 * 22 21 20 41 41 H 1.09001 * 109.47031 * 191.28476 * 24 23 16 42 42 H 1.09004 * 109.46792 * 311.27799 * 24 23 16 43 43 H 1.09000 * 109.47518 * 71.27773 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.4705 -0.3247 -1.5094 6 1 3.9356 0.4436 -0.9096 7 6 4.1855 -0.9429 -2.5133 8 7 3.5839 -1.7812 -3.3287 9 14 6.0086 -0.5895 -2.7152 10 1 6.4688 0.2857 -1.6072 11 1 6.7666 -1.8661 -2.6851 12 1 6.2398 0.0930 -4.0136 13 7 2.0198 -0.6926 1.1993 14 6 3.4929 -0.6427 1.2744 15 6 3.8607 -0.0332 2.6472 16 6 2.5845 -0.2908 3.4746 17 1 2.5641 -1.3314 3.7983 18 6 1.4698 -0.0724 2.4354 19 1 0.5365 -0.5444 2.7425 20 6 1.2958 1.4205 2.1366 21 6 1.1368 2.2106 3.4343 22 6 2.3946 2.0001 4.2854 23 7 2.4844 0.5769 4.6279 24 6 3.5847 0.3303 5.5694 25 1 -0.3632 0.3569 0.9637 26 1 -0.3634 0.6561 -0.7908 27 1 -0.3632 -1.0131 -0.1727 28 1 1.9838 -1.7987 -1.0953 29 1 1.4248 -0.4439 -2.1054 30 1 4.0869 -2.2158 -4.0352 31 1 3.8841 -0.0155 0.4733 32 1 3.9027 -1.6496 1.1938 33 1 4.0554 1.0355 2.5572 34 1 4.7163 -0.5486 3.0835 35 1 0.4101 1.5636 1.5176 36 1 2.1717 1.7840 1.5994 37 1 0.2620 1.8529 3.9772 38 1 1.0202 3.2702 3.2072 39 1 3.2764 2.2980 3.7182 40 1 2.3256 2.5944 5.1966 41 1 3.3807 0.8435 6.5091 42 1 3.6734 -0.7406 5.7521 43 1 4.5164 0.7050 5.1455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720400292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:46 Heat of formation + Delta-G solvation = 24.056117 kcal Electronic energy + Delta-G solvation = -20490.177166 eV Core-core repulsion = 17763.606013 eV Total energy + Delta-G solvation = -2726.571153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.51151 -36.86287 -33.47173 -33.32824 -31.84801 -29.18597 -28.00244 -26.90116 -26.29692 -23.32893 -22.84118 -22.12974 -21.05950 -18.85734 -18.14626 -16.47616 -16.22368 -15.87903 -14.90111 -14.55364 -14.21681 -13.89172 -13.80288 -13.23500 -13.12273 -12.58436 -12.47563 -12.17365 -11.83026 -11.78666 -11.55656 -11.38977 -11.27033 -11.05175 -10.98522 -10.86554 -10.63597 -10.50146 -10.35675 -10.10455 -9.92816 -9.77979 -9.02622 -8.86665 -8.32894 -8.09686 -7.34963 -6.00627 -3.99624 3.28628 3.37056 3.38710 3.94230 4.44122 4.63463 4.85886 5.07529 5.11614 5.18491 5.32585 5.34053 5.43672 5.49278 5.52590 5.61014 5.78988 5.79556 5.85314 5.91540 5.95894 5.99447 6.03836 6.14596 6.17980 6.19266 6.29183 6.43646 6.55591 6.67106 6.80736 6.95447 6.98266 7.04781 7.16872 7.28936 7.59966 7.75932 7.86705 8.00583 8.21560 8.40963 9.03313 9.60519 11.10508 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.007019 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.060320 B = 3988.330903 C = 4605.741031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.035 0.965 4 C 0.028 3.972 5 C -0.516 4.516 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.514 5.514 14 C 0.033 3.967 15 C -0.176 4.176 16 C 0.088 3.912 17 H 0.086 0.914 18 C 0.083 3.917 19 H 0.090 0.910 20 C -0.155 4.155 21 C -0.115 4.115 22 C 0.058 3.942 23 N -0.541 5.541 24 C 0.031 3.969 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.017 0.983 30 H 0.259 0.741 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 5.971 14.726 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.053 0.947 4 C -0.009 4.009 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.239 5.239 14 C -0.095 4.095 15 C -0.216 4.216 16 C -0.021 4.021 17 H 0.104 0.896 18 C -0.026 4.026 19 H 0.108 0.892 20 C -0.194 4.194 21 C -0.153 4.153 22 C -0.069 4.069 23 N -0.264 5.264 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.244 5.199 14.730 15.954 hybrid contribution 2.191 1.127 -0.579 2.531 sum -1.053 6.326 14.151 15.536 Atomic orbital electron populations 1.22135 0.96658 1.01656 1.00329 1.21976 0.93005 0.96073 0.91887 0.94721 1.19173 0.95194 0.96633 0.89936 1.21314 0.97547 1.20573 1.15949 0.92310 1.24961 0.97935 0.95501 0.95685 1.69984 1.35615 1.29630 1.17601 0.86697 0.86248 0.78001 0.78040 1.19850 1.20977 1.21088 1.64028 1.06738 1.52479 1.00608 1.23302 0.88390 1.02185 0.95609 1.23350 0.98578 1.00726 0.98920 1.21936 0.94332 0.96830 0.89041 0.89590 1.22615 0.97340 0.92197 0.90437 0.89237 1.22512 1.03076 0.96479 0.97305 1.21568 0.97854 0.99507 0.96395 1.22085 0.97633 0.88396 0.98822 1.60577 1.44663 1.05525 1.15596 1.22264 0.91853 1.01803 0.95806 0.92959 0.93167 0.92615 0.95126 0.96464 0.93085 0.87951 0.91317 0.92213 0.91879 0.90244 0.91771 0.91214 0.91973 0.94758 0.91174 0.91806 0.91570 0.95646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 8.40 37.16 0.31 -2.35 16 2 C 0.08 1.62 1.52 -67.71 -0.10 1.51 16 3 H 0.03 0.74 5.82 -51.93 -0.30 0.44 16 4 C 0.03 0.71 4.49 -27.88 -0.13 0.59 16 5 C -0.52 -13.96 7.20 -34.44 -0.25 -14.21 16 6 H 0.06 1.56 5.56 -52.49 -0.29 1.26 16 7 C 0.06 1.70 5.45 -17.82 -0.10 1.60 16 8 N -0.89 -26.43 13.30 55.43 0.74 -25.69 16 9 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.51 -9.93 5.01 -214.79 -1.08 -11.00 16 14 C 0.03 0.64 5.60 -2.58 -0.01 0.63 16 15 C -0.18 -2.82 5.04 -25.21 -0.13 -2.94 16 16 C 0.09 1.31 2.63 -67.75 -0.18 1.13 16 17 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 18 C 0.08 1.32 2.86 -66.02 -0.19 1.13 16 19 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 20 C -0.16 -2.30 3.46 -26.73 -0.09 -2.39 16 21 C -0.11 -1.41 6.11 -26.68 -0.16 -1.57 16 22 C 0.06 0.71 5.31 -3.78 -0.02 0.69 16 23 N -0.54 -7.04 4.71 -235.20 -1.11 -8.15 16 24 C 0.03 0.34 9.23 60.06 0.55 0.89 16 25 H 0.05 0.81 4.79 -51.93 -0.25 0.56 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 28 H 0.03 0.86 8.13 -51.93 -0.42 0.43 16 29 H 0.02 0.47 7.99 -51.93 -0.41 0.05 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.10 2.29 3.82 -51.93 -0.20 2.09 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.06 0.97 5.95 -51.93 -0.31 0.66 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.17 5.00 -51.93 -0.26 0.91 16 36 H 0.06 1.08 5.88 -51.93 -0.31 0.77 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.45 6.51 -51.93 -0.34 0.12 16 40 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 43 H 0.02 0.28 7.72 -51.93 -0.40 -0.12 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -28.48 305.76 -9.60 -38.09 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.25 Total: 1.13 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.49 Total: -15.28 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -1.45 Total: -44.84 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.48 -9.60 -38.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720400292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.143 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds