Wall clock time and date at job start Mon Mar 30 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99440 * 2 1 4 4 C 1.53004 * 109.47091 * 297.72551 * 3 2 1 5 5 C 1.53002 * 109.46948 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47069 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00171 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99541 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46680 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46825 * 119.99873 * 10 8 6 13 13 H 1.48496 * 109.47186 * 239.99913 * 10 8 6 14 14 C 1.46893 * 111.00390 * 123.95442 * 2 1 3 15 15 C 1.54744 * 109.71388 * 57.52251 * 14 2 1 16 16 C 1.53712 * 108.25063 * 65.69619 * 15 14 2 17 17 H 1.08995 * 112.12836 * 188.26013 * 16 15 14 18 18 C 1.54605 * 108.35217 * 312.66309 * 16 15 14 19 19 C 1.55893 * 104.99574 * 88.76903 * 18 16 15 20 20 C 1.54615 * 104.07512 * 0.02562 * 19 18 16 21 21 H 1.08998 * 112.21559 * 147.26494 * 20 19 18 22 22 C 1.53131 * 109.43122 * 177.66042 * 14 2 1 23 23 N 1.48715 * 107.23516 * 64.62375 * 16 15 14 24 24 H 1.09000 * 109.47371 * 298.33894 * 1 2 3 25 25 H 1.08998 * 109.47499 * 58.34264 * 1 2 3 26 26 H 1.09002 * 109.46854 * 178.34435 * 1 2 3 27 27 H 1.08994 * 109.47174 * 57.72883 * 3 2 1 28 28 H 1.09006 * 109.47014 * 177.73265 * 3 2 1 29 29 H 1.08994 * 109.47382 * 300.00204 * 4 3 2 30 30 H 1.08998 * 109.46782 * 60.00780 * 4 3 2 31 31 H 1.08994 * 109.47779 * 300.00564 * 5 4 3 32 32 H 1.09011 * 109.46738 * 60.00408 * 5 4 3 33 33 H 0.97003 * 120.00030 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.38531 * 297.52816 * 14 2 1 35 35 H 1.09002 * 109.43955 * 306.33387 * 15 14 2 36 36 H 1.08998 * 110.33151 * 185.58278 * 15 14 2 37 37 H 1.09002 * 110.36432 * 207.61859 * 18 16 15 38 38 H 1.09000 * 110.36750 * 329.94184 * 18 16 15 39 39 H 1.08996 * 110.91682 * 241.34109 * 19 18 16 40 40 H 1.09004 * 110.55147 * 118.52150 * 19 18 16 41 41 H 1.08994 * 109.57568 * 174.11558 * 22 14 2 42 42 H 1.09000 * 109.56977 * 53.87182 * 22 14 2 43 43 H 1.00902 * 110.99831 * 45.94982 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.5515 2.0881 -1.2769 5 6 2.0991 3.5168 -1.2766 6 6 1.6615 4.2228 -2.5339 7 1 1.0532 3.7045 -3.2604 8 6 2.0376 5.5304 -2.7569 9 7 2.7779 6.1616 -1.8720 10 14 1.4957 6.4054 -4.3158 11 1 0.6761 5.4828 -5.1417 12 1 0.6878 7.5989 -3.9582 13 1 2.6919 6.8301 -5.0864 14 6 1.9955 -0.7659 1.1375 15 6 1.4524 -2.2141 1.0879 16 6 2.0268 -2.9011 -0.1614 17 1 1.5739 -3.8766 -0.3384 18 6 1.8510 -1.9476 -1.3656 19 6 3.1384 -1.0686 -1.3755 20 6 3.9576 -1.5881 -0.1715 21 1 5.0317 -1.5253 -0.3460 22 6 3.5251 -0.7916 1.0701 23 7 3.4999 -2.9897 0.0226 24 1 -0.3634 0.4878 0.9045 25 1 -0.3634 0.5393 -0.8747 26 1 -0.3633 -1.0273 -0.0297 27 1 1.6132 1.9073 0.8689 28 1 3.0842 1.3428 0.0407 29 1 1.9335 1.5523 -2.1458 30 1 0.4626 2.1169 -1.3176 31 1 1.7168 4.0523 -0.4077 32 1 3.1881 3.4884 -1.2356 33 1 3.0423 7.0817 -2.0286 34 1 1.6815 -0.2934 2.0683 35 1 0.3644 -2.1915 1.0243 36 1 1.7564 -2.7633 1.9789 37 1 1.7746 -2.5168 -2.2921 38 1 0.9682 -1.3230 -1.2292 39 1 2.8917 -0.0156 -1.2405 40 1 3.6934 -1.2132 -2.3025 41 1 3.9222 -1.2684 1.9662 42 1 3.9046 0.2278 1.0002 43 1 3.7295 -3.3202 0.9478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040747153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:58 Heat of formation + Delta-G solvation = 39.829417 kcal Electronic energy + Delta-G solvation = -20144.603153 eV Core-core repulsion = 17418.715982 eV Total energy + Delta-G solvation = -2725.887171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12338 -36.61826 -33.70726 -31.96538 -31.52644 -30.45990 -29.34896 -27.05031 -25.23637 -23.90369 -22.87437 -21.19160 -20.03322 -19.69654 -19.04460 -16.80280 -16.42363 -16.19013 -14.79684 -14.58809 -14.36641 -14.18676 -13.55801 -13.46020 -12.80667 -12.68025 -12.45178 -12.31158 -12.14375 -11.68760 -11.61902 -11.50610 -11.35371 -11.23316 -10.85480 -10.70214 -10.55415 -10.38067 -10.31459 -10.04976 -9.71799 -9.60415 -9.33036 -9.03746 -8.41112 -8.34045 -7.73902 -5.99352 -4.01227 3.31678 3.39267 3.43567 4.03186 4.36403 4.47554 4.65903 4.83458 4.91882 5.14761 5.27168 5.32223 5.36512 5.37752 5.41470 5.52189 5.61379 5.66593 5.79134 5.83862 5.91431 5.95031 5.97833 5.99921 6.13694 6.32273 6.33149 6.34824 6.53141 6.65163 6.71928 6.75701 6.83980 7.08698 7.15791 7.34055 7.35081 7.42761 7.68896 7.82787 8.01050 8.44243 9.06252 9.62979 11.12132 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.004803 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.438831 B = 5828.308111 C = 5860.032916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.516 5.516 3 C 0.041 3.959 4 C -0.106 4.106 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.083 3.917 15 C -0.145 4.145 16 C 0.067 3.933 17 H 0.084 0.916 18 C -0.111 4.111 19 C -0.115 4.115 20 C 0.068 3.932 21 H 0.087 0.913 22 C -0.148 4.148 23 N -0.661 5.661 24 H 0.022 0.978 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.042 0.958 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.673 -16.796 6.696 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.241 5.241 3 C -0.085 4.085 4 C -0.144 4.144 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.026 4.026 15 C -0.184 4.184 16 C -0.043 4.043 17 H 0.102 0.898 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.042 4.042 21 H 0.105 0.895 22 C -0.187 4.187 23 N -0.289 5.289 24 H 0.040 0.960 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.238 -17.154 5.632 18.097 hybrid contribution -0.776 1.451 1.010 1.931 sum -2.014 -15.703 6.641 17.168 Atomic orbital electron populations 1.22602 0.88589 1.01422 1.01373 1.63285 1.06912 1.13923 1.39961 1.22503 1.00242 0.86565 0.99228 1.21713 0.99933 0.98059 0.94682 1.19073 0.96244 0.89310 0.96959 1.21279 1.32066 0.97140 1.05032 0.92631 1.25024 0.95217 0.97638 0.96611 1.69976 1.37043 1.11582 1.35015 0.86557 0.78434 0.79617 0.83536 1.19712 1.21102 1.21011 1.21880 0.94801 0.93752 0.92139 1.22768 1.01336 0.95454 0.98858 1.22781 0.88410 0.97997 0.95084 0.89754 1.22912 1.01264 0.95994 0.94696 1.23002 0.94172 1.03175 0.94896 1.22782 0.99064 0.87108 0.95207 0.89496 1.22514 0.94967 1.02417 0.98818 1.63950 1.10617 1.21180 1.33124 0.95987 0.90245 0.91407 0.95411 0.90507 0.92352 0.93315 0.96941 0.96639 0.93117 0.94662 0.91172 0.91997 0.94138 0.87670 0.86762 0.93897 0.92170 0.90545 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 7.50 60.06 0.45 0.55 16 2 N -0.52 -6.96 0.61 -233.70 -0.14 -7.10 16 3 C 0.04 0.67 3.54 -3.82 -0.01 0.66 16 4 C -0.11 -2.10 4.83 -26.73 -0.13 -2.23 16 5 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 6 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 7 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 10 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.08 1.00 2.29 -66.73 -0.15 0.85 16 15 C -0.14 -1.51 5.12 -25.44 -0.13 -1.64 16 16 C 0.07 0.76 4.55 -65.49 -0.30 0.47 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.11 -1.45 5.95 -24.34 -0.14 -1.59 16 19 C -0.11 -1.64 6.00 -24.34 -0.15 -1.78 16 20 C 0.07 0.86 4.55 -65.48 -0.30 0.56 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 22 C -0.15 -1.77 5.00 -26.29 -0.13 -1.90 16 23 N -0.66 -7.80 7.40 -94.67 -0.70 -8.51 16 24 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 1.07 6.27 -51.93 -0.33 0.75 16 26 H 0.07 0.73 5.30 -51.93 -0.28 0.46 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.27 5.26 -51.93 -0.27 1.00 16 29 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 30 H 0.05 0.96 6.42 -51.93 -0.33 0.62 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.70 6.04 -51.93 -0.31 0.39 16 36 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 1.39 3.50 -51.93 -0.18 1.20 16 39 H 0.11 1.79 2.72 -51.93 -0.14 1.65 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 42 H 0.08 0.99 5.94 -51.93 -0.31 0.69 16 43 H 0.33 3.35 8.22 -39.29 -0.32 3.03 16 LS Contribution 303.43 15.07 4.57 4.57 Total: -1.00 -29.09 303.43 -9.13 -38.23 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.04 Total: 1.39 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.54 Total: -19.02 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.11 Total: -41.84 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.09 -9.13 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040747153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.057 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds