Wall clock time and date at job start Mon Mar 30 2020 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99440 * 2 1 4 4 C 1.53004 * 109.47091 * 297.72551 * 3 2 1 5 5 C 1.53002 * 109.46948 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47069 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00171 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99541 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46680 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.46825 * 119.99873 * 10 8 6 13 13 H 1.48496 * 109.47186 * 239.99913 * 10 8 6 14 14 C 1.46893 * 111.00390 * 123.95442 * 2 1 3 15 15 C 1.54744 * 109.71388 * 57.52251 * 14 2 1 16 16 C 1.53712 * 108.25063 * 65.69619 * 15 14 2 17 17 H 1.08995 * 112.12836 * 188.26013 * 16 15 14 18 18 C 1.54605 * 108.35217 * 312.66309 * 16 15 14 19 19 C 1.55893 * 104.99574 * 88.76903 * 18 16 15 20 20 C 1.54615 * 104.07512 * 0.02562 * 19 18 16 21 21 H 1.08998 * 112.21559 * 147.26494 * 20 19 18 22 22 C 1.53131 * 109.43122 * 177.66042 * 14 2 1 23 23 N 1.48715 * 107.23516 * 64.62375 * 16 15 14 24 24 H 1.09000 * 109.47371 * 298.33894 * 1 2 3 25 25 H 1.08998 * 109.47499 * 58.34264 * 1 2 3 26 26 H 1.09002 * 109.46854 * 178.34435 * 1 2 3 27 27 H 1.08994 * 109.47174 * 57.72883 * 3 2 1 28 28 H 1.09006 * 109.47014 * 177.73265 * 3 2 1 29 29 H 1.08994 * 109.47382 * 300.00204 * 4 3 2 30 30 H 1.08998 * 109.46782 * 60.00780 * 4 3 2 31 31 H 1.08994 * 109.47779 * 300.00564 * 5 4 3 32 32 H 1.09011 * 109.46738 * 60.00408 * 5 4 3 33 33 H 0.97003 * 120.00030 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.38531 * 297.52816 * 14 2 1 35 35 H 1.09002 * 109.43955 * 306.33387 * 15 14 2 36 36 H 1.08998 * 110.33151 * 185.58278 * 15 14 2 37 37 H 1.09002 * 110.36432 * 207.61859 * 18 16 15 38 38 H 1.09000 * 110.36750 * 329.94184 * 18 16 15 39 39 H 1.08996 * 110.91682 * 241.34109 * 19 18 16 40 40 H 1.09004 * 110.55147 * 118.52150 * 19 18 16 41 41 H 1.08994 * 109.57568 * 174.11558 * 22 14 2 42 42 H 1.09000 * 109.56977 * 53.87182 * 22 14 2 43 43 H 1.00902 * 110.99831 * 45.94982 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.5515 2.0881 -1.2769 5 6 2.0991 3.5168 -1.2766 6 6 1.6615 4.2228 -2.5339 7 1 1.0532 3.7045 -3.2604 8 6 2.0376 5.5304 -2.7569 9 7 2.7779 6.1616 -1.8720 10 14 1.4957 6.4054 -4.3158 11 1 0.6761 5.4828 -5.1417 12 1 0.6878 7.5989 -3.9582 13 1 2.6919 6.8301 -5.0864 14 6 1.9955 -0.7659 1.1375 15 6 1.4524 -2.2141 1.0879 16 6 2.0268 -2.9011 -0.1614 17 1 1.5739 -3.8766 -0.3384 18 6 1.8510 -1.9476 -1.3656 19 6 3.1384 -1.0686 -1.3755 20 6 3.9576 -1.5881 -0.1715 21 1 5.0317 -1.5253 -0.3460 22 6 3.5251 -0.7916 1.0701 23 7 3.4999 -2.9897 0.0226 24 1 -0.3634 0.4878 0.9045 25 1 -0.3634 0.5393 -0.8747 26 1 -0.3633 -1.0273 -0.0297 27 1 1.6132 1.9073 0.8689 28 1 3.0842 1.3428 0.0407 29 1 1.9335 1.5523 -2.1458 30 1 0.4626 2.1169 -1.3176 31 1 1.7168 4.0523 -0.4077 32 1 3.1881 3.4884 -1.2356 33 1 3.0423 7.0817 -2.0286 34 1 1.6815 -0.2934 2.0683 35 1 0.3644 -2.1915 1.0243 36 1 1.7564 -2.7633 1.9789 37 1 1.7746 -2.5168 -2.2921 38 1 0.9682 -1.3230 -1.2292 39 1 2.8917 -0.0156 -1.2405 40 1 3.6934 -1.2132 -2.3025 41 1 3.9222 -1.2684 1.9662 42 1 3.9046 0.2278 1.0002 43 1 3.7295 -3.3202 0.9478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040747153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:58 Heat of formation + Delta-G solvation = 22.909735 kcal Electronic energy + Delta-G solvation = -20145.336846 eV Core-core repulsion = 17418.715982 eV Total energy + Delta-G solvation = -2726.620863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.13906 -37.83671 -35.59574 -33.58648 -32.54082 -31.74105 -30.42667 -28.61617 -26.68115 -24.87866 -24.46306 -22.48191 -21.50992 -20.80870 -20.05305 -18.48062 -17.77263 -17.44617 -16.53752 -15.89534 -15.68282 -15.42886 -14.75580 -14.49906 -14.33256 -13.86529 -13.75096 -13.52209 -13.40803 -13.19741 -13.01813 -12.75080 -12.62277 -12.50744 -12.39670 -12.29990 -12.16081 -11.56692 -11.49182 -11.37663 -11.30173 -11.05359 -10.95146 -10.80464 -10.54590 -9.35288 -8.82822 -8.19877 -6.30317 1.39763 1.40307 1.53592 2.41006 2.92866 3.13699 3.45139 3.70771 3.87105 3.97425 4.13752 4.22141 4.26941 4.34786 4.36405 4.50287 4.51393 4.62151 4.65778 4.72733 4.81269 4.87342 4.93011 4.99017 5.02274 5.03819 5.16277 5.21162 5.29008 5.33499 5.35091 5.46510 5.54061 5.70183 5.71850 5.76706 5.87586 6.04725 6.14518 6.22853 6.28816 6.59631 6.87066 7.39039 8.92259 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.037203 B = 0.004803 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.438831 B = 5828.308111 C = 5860.032916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.513 5.513 3 C 0.057 3.943 4 C -0.088 4.088 5 C 0.026 3.974 6 C -0.539 4.539 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.080 3.920 15 C -0.136 4.136 16 C 0.071 3.929 17 H 0.099 0.901 18 C -0.112 4.112 19 C -0.121 4.121 20 C 0.071 3.929 21 H 0.085 0.915 22 C -0.144 4.144 23 N -0.665 5.665 24 H 0.022 0.978 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.052 0.948 31 H -0.013 1.013 32 H -0.010 1.010 33 H 0.263 0.737 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.027 0.973 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -18.407 6.813 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.237 5.237 3 C -0.071 4.071 4 C -0.126 4.126 5 C -0.012 4.012 6 C -0.577 4.577 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.028 4.028 15 C -0.175 4.175 16 C -0.039 4.039 17 H 0.117 0.883 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.039 4.039 21 H 0.103 0.897 22 C -0.184 4.184 23 N -0.294 5.294 24 H 0.040 0.960 25 H 0.086 0.914 26 H 0.111 0.889 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.005 0.995 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.053 0.947 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.205 -18.789 5.758 19.775 hybrid contribution -0.451 1.936 0.983 2.217 sum -2.656 -16.853 6.740 18.345 Atomic orbital electron populations 1.22644 0.87740 1.02830 1.00795 1.63253 1.07628 1.11765 1.41090 1.22171 1.00016 0.88117 0.96747 1.21424 0.99706 0.94937 0.96507 1.18969 0.94649 0.92392 0.95147 1.21713 1.32163 0.97834 1.05958 0.92282 1.25964 0.95136 0.98562 1.00150 1.70104 1.38163 1.12082 1.37139 0.85424 0.78210 0.78382 0.79206 1.18580 1.20399 1.20409 1.21979 0.94838 0.94729 0.91237 1.22726 1.01798 0.93792 0.99139 1.22794 0.88274 0.98260 0.94574 0.88332 1.22902 1.00403 0.96106 0.95524 1.22982 0.95223 1.02629 0.95092 1.22687 0.98712 0.87845 0.94687 0.89734 1.22478 0.95024 1.01554 0.99305 1.63916 1.10980 1.20309 1.34151 0.95989 0.91444 0.88945 0.96369 0.90933 0.92667 0.92961 0.99452 0.99132 0.92843 0.94740 0.90159 0.90024 0.94700 0.87750 0.88401 0.95432 0.90222 0.92174 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 7.50 127.69 0.96 1.13 16 2 N -0.51 -13.35 0.61 -893.28 -0.54 -13.89 16 3 C 0.06 1.89 3.54 86.30 0.31 2.19 16 4 C -0.09 -3.57 4.83 30.60 0.15 -3.42 16 5 C 0.03 1.38 4.97 29.85 0.15 1.53 16 6 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 7 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 10 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 14 C 0.08 1.78 2.29 45.56 0.10 1.89 16 15 C -0.14 -2.35 5.12 31.43 0.16 -2.19 16 16 C 0.07 1.40 4.55 45.35 0.21 1.61 16 17 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 18 C -0.11 -2.75 5.95 32.14 0.19 -2.56 16 19 C -0.12 -3.43 6.00 32.15 0.19 -3.24 16 20 C 0.07 1.70 4.55 45.36 0.21 1.91 16 21 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 22 C -0.14 -3.24 5.00 30.88 0.15 -3.08 16 23 N -0.66 -14.07 7.40 -453.43 -3.36 -17.43 16 24 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 1.75 6.27 -2.39 -0.01 1.74 16 26 H 0.09 1.73 5.30 -2.39 -0.01 1.72 16 27 H 0.02 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.07 2.49 5.26 -2.38 -0.01 2.47 16 29 H 0.05 2.27 7.35 -2.39 -0.02 2.25 16 30 H 0.05 2.07 6.42 -2.39 -0.02 2.05 16 31 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.08 1.27 6.04 -2.39 -0.01 1.26 16 36 H 0.08 1.17 8.03 -2.39 -0.02 1.15 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 2.57 3.50 -2.39 -0.01 2.56 16 39 H 0.10 3.10 2.72 -2.39 -0.01 3.10 16 40 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 1.48 8.04 -2.39 -0.02 1.46 16 42 H 0.06 1.55 5.94 -2.39 -0.01 1.54 16 43 H 0.34 5.87 8.22 -89.69 -0.74 5.13 16 Total: -1.00 -62.94 303.43 2.14 -60.79 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.26 Total: 15.41 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.47 Total: -34.51 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -3.61 Total: -88.38 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -62.94 2.14 -60.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040747153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.703 kcal (2) G-P(sol) polarization free energy of solvation -62.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds