Wall clock time and date at job start Mon Mar 30 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46843 * 111.00230 * 2 1 4 4 C 1.53033 * 109.52759 * 174.16260 * 3 2 1 5 5 C 1.53118 * 109.27629 * 59.17659 * 4 3 2 6 6 C 1.53115 * 109.16471 * 302.35005 * 5 4 3 7 7 H 1.09003 * 109.52994 * 297.69438 * 6 5 4 8 8 C 1.52999 * 109.50519 * 177.59731 * 6 5 4 9 9 N 1.46904 * 109.47170 * 175.19546 * 8 6 5 10 10 C 1.46895 * 110.99602 * 179.97438 * 9 8 6 11 11 C 1.53009 * 109.46898 * 185.53450 * 10 9 8 12 12 C 1.50702 * 115.54845 * 294.91395 * 11 10 9 13 13 H 1.07997 * 119.99974 * 94.85941 * 12 11 10 14 14 C 1.37882 * 119.99732 * 275.13226 * 12 11 10 15 15 N 1.31516 * 119.99844 * 6.29748 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 186.30025 * 14 12 11 17 17 H 1.48496 * 109.47036 * 59.99893 * 16 14 12 18 18 H 1.48492 * 109.47075 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46928 * 300.00128 * 16 14 12 20 20 C 1.53001 * 117.49469 * 80.57844 * 11 10 9 21 21 C 1.52995 * 117.49775 * 149.23748 * 11 10 9 22 22 C 1.46849 * 111.00051 * 235.78950 * 2 1 3 23 23 H 1.09008 * 109.47050 * 184.20943 * 1 2 3 24 24 H 1.09003 * 109.46930 * 304.20404 * 1 2 3 25 25 H 1.08994 * 109.47663 * 64.21179 * 1 2 3 26 26 H 1.09003 * 109.46198 * 294.17904 * 3 2 1 27 27 H 1.09006 * 109.45974 * 54.14424 * 3 2 1 28 28 H 1.09000 * 109.50741 * 179.12187 * 4 3 2 29 29 H 1.09000 * 109.50008 * 299.23675 * 4 3 2 30 30 H 1.09005 * 109.52142 * 182.44179 * 5 4 3 31 31 H 1.08995 * 109.52113 * 62.25856 * 5 4 3 32 32 H 1.08998 * 109.47095 * 55.19388 * 8 6 5 33 33 H 1.08998 * 109.46951 * 295.19688 * 8 6 5 34 34 H 1.00895 * 110.99565 * 303.95169 * 9 8 6 35 35 H 1.08996 * 109.47543 * 65.53825 * 10 9 8 36 36 H 1.08996 * 109.47207 * 305.53255 * 10 9 8 37 37 H 0.96999 * 119.99925 * 185.00807 * 15 14 12 38 38 H 1.09002 * 117.49442 * 215.00114 * 20 11 10 39 39 H 1.08992 * 117.50118 * 0.02794 * 20 11 10 40 40 H 1.08996 * 117.50165 * 359.97438 * 21 11 10 41 41 H 1.09001 * 117.49636 * 144.99958 * 21 11 10 42 42 H 1.09001 * 109.46093 * 65.82038 * 22 2 1 43 43 H 1.09003 * 109.45224 * 305.85358 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0210 7 1 3.7813 -1.3842 -0.0958 8 6 4.0680 -1.6558 -2.2139 9 7 3.5819 -3.0409 -2.1554 10 6 4.0905 -3.8255 -3.2883 11 6 3.4558 -5.2177 -3.2703 12 6 3.8178 -6.0818 -2.0899 13 1 3.1729 -6.1111 -1.2241 14 6 4.9754 -6.8307 -2.1130 15 7 5.8247 -6.6977 -3.1083 16 14 5.3370 -8.0340 -0.7308 17 1 4.2548 -9.0484 -0.6618 18 1 6.6332 -8.7106 -0.9901 19 1 5.4103 -7.2999 0.5580 20 6 2.0432 -5.3574 -3.8413 21 6 3.2408 -5.9135 -4.6158 22 6 1.9953 -0.7708 -1.1337 23 1 -0.3633 -1.0250 0.0754 24 1 -0.3633 0.5777 0.8499 25 1 -0.3634 0.4470 -0.9252 26 1 1.7325 1.8608 -0.9376 27 1 1.5634 1.9257 0.8330 28 1 3.9099 2.3512 0.1310 29 1 3.7813 0.8568 1.0906 30 1 5.1997 0.4714 -0.8906 31 1 3.8887 1.0354 -1.9560 32 1 5.1574 -1.6514 -2.1806 33 1 3.7309 -1.1914 -3.1406 34 1 3.8264 -3.4730 -1.2770 35 1 5.1735 -3.9190 -3.2085 36 1 3.8369 -3.3227 -4.2215 37 1 6.6022 -7.2752 -3.1628 38 1 1.3759 -6.0745 -3.3632 39 1 1.5663 -4.4578 -4.2302 40 1 3.5510 -5.3794 -5.5138 41 1 3.3612 -6.9963 -4.6473 42 1 1.7324 -0.2709 -2.0660 43 1 1.5633 -1.7716 -1.1240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:44 Heat of formation + Delta-G solvation = 12.184176 kcal Electronic energy + Delta-G solvation = -19178.531655 eV Core-core repulsion = 16451.445696 eV Total energy + Delta-G solvation = -2727.085959 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.08526 -36.88758 -34.92967 -33.02307 -31.87419 -30.71437 -26.74310 -26.22085 -25.18928 -23.30134 -22.52137 -21.10722 -20.78557 -19.65738 -18.89310 -15.99317 -15.66045 -15.33183 -14.68444 -14.58950 -14.40466 -14.32216 -13.97193 -13.75421 -12.88214 -12.83002 -12.68666 -12.18935 -12.12646 -11.85715 -11.56139 -11.34476 -11.07837 -10.97107 -10.94038 -10.80100 -10.44188 -10.40526 -10.21856 -10.17564 -10.05918 -9.36174 -8.68493 -8.36808 -8.25513 -8.02536 -7.41750 -5.99818 -4.05302 3.32719 3.37826 3.40997 3.99931 4.43969 4.70799 4.89357 4.93961 5.15999 5.19866 5.30052 5.36437 5.44271 5.53041 5.55465 5.66155 5.69961 5.80957 5.87198 5.88804 5.96310 6.00533 6.09616 6.15057 6.20576 6.25320 6.49063 6.53665 6.58158 6.64258 6.89330 6.89714 6.97049 7.16213 7.19215 7.21169 7.56869 7.60516 7.91667 8.06179 8.35310 8.54090 8.98433 9.60696 11.08778 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.004947 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.147571 B = 5659.126089 C = 5873.430147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.080 4.080 7 H 0.077 0.923 8 C 0.064 3.936 9 N -0.680 5.680 10 C 0.106 3.894 11 C 0.051 3.949 12 C -0.490 4.490 13 H 0.059 0.941 14 C 0.070 3.930 15 N -0.880 5.880 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.277 1.277 20 C -0.200 4.200 21 C -0.163 4.163 22 C 0.071 3.929 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.023 0.977 33 H 0.059 0.941 34 H 0.347 0.653 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.026 0.974 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.234 14.523 3.881 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.099 4.099 7 H 0.095 0.905 8 C -0.067 4.067 9 N -0.311 5.311 10 C -0.023 4.023 11 C 0.051 3.949 12 C -0.528 4.528 13 H 0.078 0.922 14 C -0.133 4.133 15 N -0.517 5.517 16 Si 0.713 3.287 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.237 4.237 21 C -0.201 4.201 22 C -0.056 4.056 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.455 14.414 3.958 15.912 hybrid contribution 0.945 -0.472 0.054 1.057 sum -4.511 13.943 4.012 15.193 Atomic orbital electron populations 1.22317 0.87582 1.02401 0.99815 1.61923 1.07322 1.13168 1.44643 1.22076 0.95728 0.89666 0.99823 1.21560 0.94437 0.99739 0.99558 1.21619 0.99926 0.95776 0.98155 1.21164 0.94558 0.94877 0.99290 0.90455 1.21918 0.96383 0.91121 0.97248 1.60429 1.62879 1.00623 1.07199 1.21423 0.97147 0.92980 0.90722 1.18736 0.91601 0.91703 0.92892 1.20444 1.05774 1.25645 1.00964 0.92247 1.24982 0.95509 0.96905 0.95893 1.70018 1.12466 1.37620 1.31636 0.86772 0.77373 0.81709 0.82825 1.20306 1.21465 1.20205 1.22858 0.92782 1.01071 1.07017 1.22523 1.02384 0.99517 0.95710 1.22066 0.95013 0.98788 0.89780 0.91091 0.91882 0.96049 0.95372 0.91325 0.91908 0.91137 0.91889 0.92447 0.95914 0.92220 0.83423 0.94758 0.94671 0.93138 0.90942 0.91791 0.92281 0.90386 0.95572 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.59 60.06 0.58 0.88 16 2 N -0.55 -7.00 4.91 -242.96 -1.19 -8.19 16 3 C 0.06 0.61 5.46 -3.84 -0.02 0.58 16 4 C -0.12 -1.22 6.09 -26.65 -0.16 -1.38 16 5 C -0.12 -1.37 5.29 -26.61 -0.14 -1.51 16 6 C -0.08 -1.12 2.49 -90.55 -0.23 -1.34 16 7 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 8 C 0.06 1.03 5.07 -3.82 -0.02 1.01 16 9 N -0.68 -13.23 5.94 -113.78 -0.68 -13.90 16 10 C 0.11 2.38 5.54 -3.82 -0.02 2.36 16 11 C 0.05 1.26 1.56 -155.66 -0.24 1.02 16 12 C -0.49 -13.15 8.33 -34.44 -0.29 -13.43 16 13 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 14 C 0.07 1.89 5.39 -17.82 -0.10 1.80 16 15 N -0.88 -24.83 12.93 55.43 0.72 -24.12 16 16 Si 0.89 21.03 29.55 -169.99 -5.02 16.00 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.20 -4.51 9.96 -26.69 -0.27 -4.77 16 21 C -0.16 -3.92 9.44 -26.70 -0.25 -4.17 16 22 C 0.07 1.00 4.62 -3.84 -0.02 0.98 16 23 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.35 7.16 8.31 -39.29 -0.33 6.84 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 LS Contribution 340.23 15.07 5.13 5.13 Total: -1.00 -27.37 340.23 -10.52 -37.89 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.30 Total: 5.16 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.18 Total: -17.97 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.15 Total: -46.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.37 -10.52 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.074 kcal (2) G-P(sol) polarization free energy of solvation -27.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds