Wall clock time and date at job start Mon Mar 30 2020 04:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46843 * 111.00230 * 2 1 4 4 C 1.53033 * 109.52759 * 174.16260 * 3 2 1 5 5 C 1.53118 * 109.27629 * 59.17659 * 4 3 2 6 6 C 1.53115 * 109.16471 * 302.35005 * 5 4 3 7 7 H 1.09003 * 109.52994 * 297.69438 * 6 5 4 8 8 C 1.52999 * 109.50519 * 177.59731 * 6 5 4 9 9 N 1.46904 * 109.47170 * 175.19546 * 8 6 5 10 10 C 1.46895 * 110.99602 * 179.97438 * 9 8 6 11 11 C 1.53009 * 109.46898 * 185.53450 * 10 9 8 12 12 C 1.50702 * 115.54845 * 294.91395 * 11 10 9 13 13 H 1.07997 * 119.99974 * 94.85941 * 12 11 10 14 14 C 1.37882 * 119.99732 * 275.13226 * 12 11 10 15 15 N 1.31516 * 119.99844 * 6.29748 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 186.30025 * 14 12 11 17 17 H 1.48496 * 109.47036 * 59.99893 * 16 14 12 18 18 H 1.48492 * 109.47075 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46928 * 300.00128 * 16 14 12 20 20 C 1.53001 * 117.49469 * 80.57844 * 11 10 9 21 21 C 1.52995 * 117.49775 * 149.23748 * 11 10 9 22 22 C 1.46849 * 111.00051 * 235.78950 * 2 1 3 23 23 H 1.09008 * 109.47050 * 184.20943 * 1 2 3 24 24 H 1.09003 * 109.46930 * 304.20404 * 1 2 3 25 25 H 1.08994 * 109.47663 * 64.21179 * 1 2 3 26 26 H 1.09003 * 109.46198 * 294.17904 * 3 2 1 27 27 H 1.09006 * 109.45974 * 54.14424 * 3 2 1 28 28 H 1.09000 * 109.50741 * 179.12187 * 4 3 2 29 29 H 1.09000 * 109.50008 * 299.23675 * 4 3 2 30 30 H 1.09005 * 109.52142 * 182.44179 * 5 4 3 31 31 H 1.08995 * 109.52113 * 62.25856 * 5 4 3 32 32 H 1.08998 * 109.47095 * 55.19388 * 8 6 5 33 33 H 1.08998 * 109.46951 * 295.19688 * 8 6 5 34 34 H 1.00895 * 110.99565 * 303.95169 * 9 8 6 35 35 H 1.08996 * 109.47543 * 65.53825 * 10 9 8 36 36 H 1.08996 * 109.47207 * 305.53255 * 10 9 8 37 37 H 0.96999 * 119.99925 * 185.00807 * 15 14 12 38 38 H 1.09002 * 117.49442 * 215.00114 * 20 11 10 39 39 H 1.08992 * 117.50118 * 0.02794 * 20 11 10 40 40 H 1.08996 * 117.50165 * 359.97438 * 21 11 10 41 41 H 1.09001 * 117.49636 * 144.99958 * 21 11 10 42 42 H 1.09001 * 109.46093 * 65.82038 * 22 2 1 43 43 H 1.09003 * 109.45224 * 305.85358 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5369 -1.0144 6 6 3.5181 -0.8715 -1.0210 7 1 3.7813 -1.3842 -0.0958 8 6 4.0680 -1.6558 -2.2139 9 7 3.5819 -3.0409 -2.1554 10 6 4.0905 -3.8255 -3.2883 11 6 3.4558 -5.2177 -3.2703 12 6 3.8178 -6.0818 -2.0899 13 1 3.1729 -6.1111 -1.2241 14 6 4.9754 -6.8307 -2.1130 15 7 5.8247 -6.6977 -3.1083 16 14 5.3370 -8.0340 -0.7308 17 1 4.2548 -9.0484 -0.6618 18 1 6.6332 -8.7106 -0.9901 19 1 5.4103 -7.2999 0.5580 20 6 2.0432 -5.3574 -3.8413 21 6 3.2408 -5.9135 -4.6158 22 6 1.9953 -0.7708 -1.1337 23 1 -0.3633 -1.0250 0.0754 24 1 -0.3633 0.5777 0.8499 25 1 -0.3634 0.4470 -0.9252 26 1 1.7325 1.8608 -0.9376 27 1 1.5634 1.9257 0.8330 28 1 3.9099 2.3512 0.1310 29 1 3.7813 0.8568 1.0906 30 1 5.1997 0.4714 -0.8906 31 1 3.8887 1.0354 -1.9560 32 1 5.1574 -1.6514 -2.1806 33 1 3.7309 -1.1914 -3.1406 34 1 3.8264 -3.4730 -1.2770 35 1 5.1735 -3.9190 -3.2085 36 1 3.8369 -3.3227 -4.2215 37 1 6.6022 -7.2752 -3.1628 38 1 1.3759 -6.0745 -3.3632 39 1 1.5663 -4.4578 -4.2302 40 1 3.5510 -5.3794 -5.5138 41 1 3.3612 -6.9963 -4.6473 42 1 1.7324 -0.2709 -2.0660 43 1 1.5633 -1.7716 -1.1240 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:44 Heat of formation + Delta-G solvation = -4.112975 kcal Electronic energy + Delta-G solvation = -19179.238352 eV Core-core repulsion = 16451.445696 eV Total energy + Delta-G solvation = -2727.792656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.12888 -38.67542 -36.32453 -34.16217 -33.91358 -31.89457 -27.97883 -27.62175 -26.97675 -24.68632 -23.55771 -22.83487 -22.12940 -21.01589 -20.48659 -17.90022 -16.87219 -16.63841 -16.38323 -15.96728 -15.73315 -15.48367 -15.28197 -15.23724 -14.48994 -14.00893 -13.90018 -13.55439 -13.20500 -13.11824 -13.06383 -12.94218 -12.81587 -12.72486 -12.34403 -12.25924 -11.99301 -11.88494 -11.53323 -11.45277 -11.19705 -11.09698 -10.66759 -10.37983 -9.91494 -9.21792 -9.06581 -8.07807 -6.18209 1.43330 1.44324 1.51356 2.45154 3.05202 3.21346 3.30253 3.72730 3.93554 3.95621 4.07086 4.19153 4.35263 4.41324 4.52610 4.57839 4.59654 4.67101 4.67683 4.73429 4.79916 4.83379 4.88775 4.93504 5.01480 5.04065 5.05069 5.07308 5.10513 5.15056 5.23676 5.29910 5.41291 5.52252 5.67925 5.69601 5.82519 6.18470 6.25321 6.39455 6.50356 6.67032 6.91165 7.50165 9.00119 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.004947 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.147571 B = 5659.126089 C = 5873.430147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.072 4.072 7 H 0.063 0.937 8 C 0.067 3.933 9 N -0.676 5.676 10 C 0.121 3.879 11 C 0.026 3.974 12 C -0.500 4.500 13 H 0.052 0.948 14 C 0.026 3.974 15 N -0.908 5.908 16 Si 0.944 3.056 17 H -0.275 1.275 18 H -0.288 1.288 19 H -0.271 1.271 20 C -0.177 4.177 21 C -0.168 4.168 22 C 0.079 3.921 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.339 0.661 35 H 0.002 0.998 36 H 0.044 0.956 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 16.053 4.628 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.285 5.285 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.092 4.092 7 H 0.081 0.919 8 C -0.063 4.063 9 N -0.306 5.306 10 C -0.008 4.008 11 C 0.025 3.975 12 C -0.538 4.538 13 H 0.070 0.930 14 C -0.174 4.174 15 N -0.546 5.546 16 Si 0.770 3.230 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.214 4.214 21 C -0.207 4.207 22 C -0.049 4.049 23 H 0.082 0.918 24 H 0.099 0.901 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.020 0.980 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.042 0.958 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.103 15.960 4.713 17.725 hybrid contribution 1.100 -0.916 -0.180 1.442 sum -5.004 15.044 4.533 16.489 Atomic orbital electron populations 1.22353 0.86602 1.02373 1.00785 1.61923 1.08391 1.14340 1.43817 1.22168 0.95951 0.88643 1.00663 1.21557 0.94211 1.00703 0.98444 1.21596 1.00113 0.94230 0.99188 1.21072 0.94783 0.95951 0.97366 0.91853 1.21976 0.96190 0.89424 0.98693 1.60426 1.62676 1.01718 1.05786 1.21151 0.94931 0.92567 0.92186 1.18902 0.93476 0.92553 0.92519 1.20665 1.05643 1.26038 1.01452 0.93003 1.25624 0.95414 0.98445 0.97901 1.70123 1.12831 1.38358 1.33320 0.85839 0.77042 0.79705 0.80391 1.20037 1.21371 1.19611 1.22825 0.91804 1.01422 1.05373 1.22449 1.03761 0.98340 0.96102 1.21870 0.94752 0.97860 0.90386 0.91834 0.90112 0.95670 0.95057 0.89703 0.89570 0.91800 0.91473 0.91841 0.96318 0.91611 0.84386 0.98000 0.93720 0.93337 0.91015 0.89730 0.91181 0.92540 0.95768 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 127.69 1.22 1.77 16 2 N -0.56 -13.44 4.91 -922.60 -4.53 -17.98 16 3 C 0.05 1.03 5.46 86.33 0.47 1.50 16 4 C -0.11 -2.06 6.09 30.64 0.19 -1.88 16 5 C -0.11 -2.44 5.29 30.67 0.16 -2.28 16 6 C -0.07 -1.97 2.49 -10.75 -0.03 -2.00 16 7 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 8 C 0.07 2.13 5.07 86.30 0.44 2.57 16 9 N -0.68 -26.31 5.94 -513.89 -3.05 -29.36 16 10 C 0.12 5.46 5.54 86.31 0.48 5.94 16 11 C 0.03 1.29 1.56 -52.93 -0.08 1.21 16 12 C -0.50 -27.02 8.33 25.60 0.21 -26.81 16 13 H 0.05 2.82 7.82 -2.91 -0.02 2.79 16 14 C 0.03 1.42 5.39 84.66 0.46 1.88 16 15 N -0.91 -51.94 12.93 21.45 0.28 -51.66 16 16 Si 0.94 43.40 29.55 68.60 2.03 45.43 16 17 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.18 -7.81 9.96 30.62 0.30 -7.50 16 21 C -0.17 -8.07 9.44 30.62 0.29 -7.78 16 22 C 0.08 2.16 4.62 86.32 0.40 2.56 16 23 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 25 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.34 14.18 8.31 -89.70 -0.75 13.43 16 35 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.04 1.90 8.08 -2.39 -0.02 1.88 16 37 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 38 H 0.07 3.15 8.14 -2.39 -0.02 3.14 16 39 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 2.19 7.76 -2.39 -0.02 2.17 16 Total: -1.00 -57.74 340.23 -0.57 -58.31 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.19 Total: 26.08 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.51 Total: -30.82 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -7.31 Total: -99.00 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -57.74 -0.57 -58.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.194 kcal (2) G-P(sol) polarization free energy of solvation -57.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds