Wall clock time and date at job start Mon Mar 30 2020 04:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46847 * 110.99828 * 2 1 4 4 C 1.53032 * 109.52399 * 185.84475 * 3 2 1 5 5 C 1.53121 * 109.27917 * 300.82183 * 4 3 2 6 6 C 1.53121 * 109.15920 * 57.64967 * 5 4 3 7 7 H 1.08994 * 109.49912 * 62.29353 * 6 5 4 8 8 C 1.53005 * 109.53459 * 182.38822 * 6 5 4 9 9 N 1.46890 * 109.47198 * 185.04252 * 8 6 5 10 10 C 1.46900 * 111.00281 * 185.25590 * 9 8 6 11 11 C 1.53004 * 109.47026 * 183.24443 * 10 9 8 12 12 C 1.50693 * 115.55510 * 64.82316 * 11 10 9 13 13 H 1.08005 * 119.99679 * 266.84931 * 12 11 10 14 14 C 1.37881 * 120.00372 * 86.84139 * 12 11 10 15 15 N 1.31505 * 119.99976 * 178.73899 * 14 12 11 16 16 Si 1.86800 * 119.99648 * 358.73935 * 14 12 11 17 17 H 1.48496 * 109.47000 * 91.35792 * 16 14 12 18 18 H 1.48503 * 109.46810 * 211.35663 * 16 14 12 19 19 H 1.48504 * 109.47016 * 331.35514 * 16 14 12 20 20 C 1.53002 * 117.49466 * 279.14604 * 11 10 9 21 21 C 1.53006 * 117.49339 * 210.48874 * 11 10 9 22 22 C 1.46841 * 111.00495 * 124.21117 * 2 1 3 23 23 H 1.09003 * 109.47022 * 295.78663 * 1 2 3 24 24 H 1.08994 * 109.47266 * 55.78805 * 1 2 3 25 25 H 1.08996 * 109.46929 * 175.79334 * 1 2 3 26 26 H 1.09002 * 109.46312 * 305.86253 * 3 2 1 27 27 H 1.09001 * 109.46609 * 65.82436 * 3 2 1 28 28 H 1.09000 * 109.50512 * 180.88369 * 4 3 2 29 29 H 1.08993 * 109.50652 * 60.76351 * 4 3 2 30 30 H 1.09009 * 109.52177 * 297.75194 * 5 4 3 31 31 H 1.08999 * 109.52776 * 177.56082 * 5 4 3 32 32 H 1.08999 * 109.46919 * 305.04087 * 8 6 5 33 33 H 1.08997 * 109.46914 * 65.03519 * 8 6 5 34 34 H 1.00902 * 111.00413 * 61.29634 * 9 8 6 35 35 H 1.09006 * 109.46679 * 303.23622 * 10 9 8 36 36 H 1.09001 * 109.47240 * 63.23708 * 10 9 8 37 37 H 0.97009 * 119.99806 * 180.02562 * 15 14 12 38 38 H 1.09001 * 117.49720 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49413 * 145.02488 * 20 11 10 40 40 H 1.08996 * 117.49845 * 214.97476 * 21 11 10 41 41 H 1.09002 * 117.49623 * 0.02562 * 21 11 10 42 42 H 1.09000 * 109.46340 * 294.17808 * 22 2 1 43 43 H 1.09005 * 109.46020 * 54.14444 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1469 5 6 4.1189 0.5370 1.0142 6 6 3.5182 -0.8714 1.0206 7 1 3.7814 -1.3835 0.0952 8 6 4.0681 -1.6567 2.2131 9 7 3.5862 -3.0429 2.1508 10 6 3.9916 -3.7955 3.3455 11 6 3.5426 -5.2517 3.2076 12 6 4.1929 -6.0296 2.0928 13 1 3.7179 -6.0850 1.1244 14 6 5.3944 -6.6706 2.3090 15 7 5.9495 -7.3700 1.3436 16 14 6.2334 -6.5455 3.9732 17 1 5.7942 -7.6723 4.8350 18 1 7.7060 -6.6066 3.7910 19 1 5.8672 -5.2582 4.6167 20 6 2.0842 -5.5755 3.5379 21 6 3.2000 -6.0098 4.4917 22 6 1.9954 -0.7707 1.1336 23 1 -0.3633 0.4471 0.9254 24 1 -0.3633 0.5778 -0.8498 25 1 -0.3633 -1.0249 -0.0754 26 1 1.5633 1.9258 -0.8329 27 1 1.7325 1.8609 0.9376 28 1 3.9098 2.3513 -0.1311 29 1 3.7813 0.8569 -1.0907 30 1 3.8888 1.0354 1.9559 31 1 5.1998 0.4715 0.8903 32 1 5.1576 -1.6490 2.1819 33 1 3.7280 -1.1950 3.1401 34 1 3.9062 -3.4996 1.3099 35 1 5.0761 -3.7578 3.4478 36 1 3.5278 -3.3541 4.2276 37 1 6.7946 -7.8213 1.4958 38 1 1.4445 -4.7511 3.8529 39 1 1.5952 -6.3515 2.9490 40 1 3.4445 -7.0713 4.5299 41 1 3.2940 -5.4709 5.4345 42 1 1.7326 -0.2709 2.0659 43 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:47 Heat of formation + Delta-G solvation = 16.307801 kcal Electronic energy + Delta-G solvation = -19235.979695 eV Core-core repulsion = 16509.072550 eV Total energy + Delta-G solvation = -2726.907145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.12195 -37.26710 -35.06158 -33.09306 -32.05495 -30.81413 -26.79237 -26.48800 -25.26530 -23.39563 -22.58499 -21.54076 -20.95979 -19.67520 -18.82459 -16.22962 -15.73901 -15.43323 -14.87980 -14.76308 -14.45427 -14.37156 -14.15842 -13.61838 -12.97959 -12.90751 -12.69885 -12.49830 -12.18725 -12.10955 -11.75366 -11.69459 -11.34165 -11.06715 -10.97428 -10.70342 -10.45417 -10.42140 -10.25209 -10.21043 -9.93248 -9.46191 -8.93979 -8.57560 -8.41168 -8.27739 -7.60050 -6.09020 -4.11576 3.30118 3.39135 3.44579 3.97319 4.44214 4.58254 4.85876 4.89789 5.01246 5.12838 5.21930 5.31291 5.34035 5.41440 5.52426 5.56103 5.65807 5.75544 5.80270 5.85862 5.91362 5.92428 5.95145 6.05002 6.09934 6.15585 6.22051 6.26826 6.42978 6.49271 6.54486 6.58614 6.59419 6.85090 7.13672 7.15622 7.17088 7.24429 7.79817 7.83961 8.21060 8.55190 8.95947 9.55286 11.02659 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.005051 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.042758 B = 5542.404136 C = 5875.347207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.055 3.945 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.079 4.079 7 H 0.079 0.921 8 C 0.063 3.937 9 N -0.679 5.679 10 C 0.099 3.901 11 C 0.005 3.995 12 C -0.485 4.485 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.899 5.899 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.296 1.296 19 H -0.259 1.259 20 C -0.168 4.168 21 C -0.207 4.207 22 C 0.071 3.929 23 H 0.020 0.980 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.060 0.940 34 H 0.355 0.645 35 H 0.024 0.976 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.025 0.975 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 16.452 0.333 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.098 4.098 7 H 0.098 0.902 8 C -0.068 4.068 9 N -0.311 5.311 10 C -0.030 4.030 11 C 0.003 3.997 12 C -0.523 4.523 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.537 5.537 16 Si 0.707 3.293 17 H -0.205 1.205 18 H -0.223 1.223 19 H -0.183 1.183 20 C -0.205 4.205 21 C -0.245 4.245 22 C -0.056 4.056 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.175 0.825 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.488 16.261 0.095 17.508 hybrid contribution 1.238 0.188 1.566 2.005 sum -5.250 16.450 1.660 17.347 Atomic orbital electron populations 1.22318 0.87560 1.02414 0.99816 1.61913 1.07327 1.13175 1.44586 1.22078 0.95743 0.89638 0.99825 1.21559 0.94413 0.99750 0.99587 1.21623 0.99977 0.95739 0.98157 1.21143 0.94535 0.94809 0.99339 0.90219 1.21924 0.96541 0.90845 0.97456 1.60408 1.63382 1.00892 1.06400 1.21618 0.96770 0.93465 0.91180 1.19367 0.94484 0.91520 0.94279 1.20316 1.05165 1.29898 0.96915 0.90342 1.24991 0.96798 0.94301 0.96491 1.69903 1.18583 1.32563 1.32604 0.86858 0.77768 0.79559 0.85073 1.20544 1.22348 1.18311 1.22683 0.92386 1.02036 1.03435 1.22981 1.06838 1.00556 0.94076 1.22060 0.95026 0.98771 0.89764 0.96094 0.91834 0.91081 0.91278 0.95406 0.91886 0.91044 0.92507 0.91843 0.95675 0.92174 0.82549 0.95738 0.93877 0.92678 0.90967 0.89975 0.89702 0.91330 0.95681 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.59 60.07 0.58 0.87 16 2 N -0.55 -6.86 4.91 -242.97 -1.19 -8.05 16 3 C 0.06 0.59 5.46 -3.84 -0.02 0.57 16 4 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 5 C -0.12 -1.34 5.29 -26.61 -0.14 -1.48 16 6 C -0.08 -1.08 2.53 -90.54 -0.23 -1.31 16 7 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 8 C 0.06 0.97 5.08 -3.83 -0.02 0.95 16 9 N -0.68 -12.63 5.97 -113.78 -0.68 -13.31 16 10 C 0.10 2.05 5.18 -3.82 -0.02 2.03 16 11 C 0.00 0.11 1.01 -155.66 -0.16 -0.05 16 12 C -0.49 -13.20 8.74 -34.44 -0.30 -13.50 16 13 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 16 Si 0.88 21.67 24.88 -169.99 -4.23 17.44 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.26 -6.07 5.74 56.52 0.32 -5.74 16 20 C -0.17 -3.51 9.96 -26.69 -0.27 -3.78 16 21 C -0.21 -4.47 7.60 -26.69 -0.20 -4.67 16 22 C 0.07 0.97 4.63 -3.84 -0.02 0.96 16 23 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.35 7.22 8.12 -39.29 -0.32 6.90 16 35 H 0.02 0.54 6.66 -51.93 -0.35 0.20 16 36 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.08 1.93 7.27 -51.93 -0.38 1.55 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 1.43 7.77 -51.93 -0.40 1.03 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -28.46 330.72 -9.66 -38.12 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.26 Total: 5.79 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.06 Total: -18.71 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -1.10 Total: -47.62 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.23 Total: 17.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.46 -9.66 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.433 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds