Wall clock time and date at job start Mon Mar 30 2020 04:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46847 * 110.99828 * 2 1 4 4 C 1.53032 * 109.52399 * 185.84475 * 3 2 1 5 5 C 1.53121 * 109.27917 * 300.82183 * 4 3 2 6 6 C 1.53121 * 109.15920 * 57.64967 * 5 4 3 7 7 H 1.08994 * 109.49912 * 62.29353 * 6 5 4 8 8 C 1.53005 * 109.53459 * 182.38822 * 6 5 4 9 9 N 1.46890 * 109.47198 * 185.04252 * 8 6 5 10 10 C 1.46900 * 111.00281 * 185.25590 * 9 8 6 11 11 C 1.53004 * 109.47026 * 183.24443 * 10 9 8 12 12 C 1.50693 * 115.55510 * 64.82316 * 11 10 9 13 13 H 1.08005 * 119.99679 * 266.84931 * 12 11 10 14 14 C 1.37881 * 120.00372 * 86.84139 * 12 11 10 15 15 N 1.31505 * 119.99976 * 178.73899 * 14 12 11 16 16 Si 1.86800 * 119.99648 * 358.73935 * 14 12 11 17 17 H 1.48496 * 109.47000 * 91.35792 * 16 14 12 18 18 H 1.48503 * 109.46810 * 211.35663 * 16 14 12 19 19 H 1.48504 * 109.47016 * 331.35514 * 16 14 12 20 20 C 1.53002 * 117.49466 * 279.14604 * 11 10 9 21 21 C 1.53006 * 117.49339 * 210.48874 * 11 10 9 22 22 C 1.46841 * 111.00495 * 124.21117 * 2 1 3 23 23 H 1.09003 * 109.47022 * 295.78663 * 1 2 3 24 24 H 1.08994 * 109.47266 * 55.78805 * 1 2 3 25 25 H 1.08996 * 109.46929 * 175.79334 * 1 2 3 26 26 H 1.09002 * 109.46312 * 305.86253 * 3 2 1 27 27 H 1.09001 * 109.46609 * 65.82436 * 3 2 1 28 28 H 1.09000 * 109.50512 * 180.88369 * 4 3 2 29 29 H 1.08993 * 109.50652 * 60.76351 * 4 3 2 30 30 H 1.09009 * 109.52177 * 297.75194 * 5 4 3 31 31 H 1.08999 * 109.52776 * 177.56082 * 5 4 3 32 32 H 1.08999 * 109.46919 * 305.04087 * 8 6 5 33 33 H 1.08997 * 109.46914 * 65.03519 * 8 6 5 34 34 H 1.00902 * 111.00413 * 61.29634 * 9 8 6 35 35 H 1.09006 * 109.46679 * 303.23622 * 10 9 8 36 36 H 1.09001 * 109.47240 * 63.23708 * 10 9 8 37 37 H 0.97009 * 119.99806 * 180.02562 * 15 14 12 38 38 H 1.09001 * 117.49720 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49413 * 145.02488 * 20 11 10 40 40 H 1.08996 * 117.49845 * 214.97476 * 21 11 10 41 41 H 1.09002 * 117.49623 * 0.02562 * 21 11 10 42 42 H 1.09000 * 109.46340 * 294.17808 * 22 2 1 43 43 H 1.09005 * 109.46020 * 54.14444 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1469 5 6 4.1189 0.5370 1.0142 6 6 3.5182 -0.8714 1.0206 7 1 3.7814 -1.3835 0.0952 8 6 4.0681 -1.6567 2.2131 9 7 3.5862 -3.0429 2.1508 10 6 3.9916 -3.7955 3.3455 11 6 3.5426 -5.2517 3.2076 12 6 4.1929 -6.0296 2.0928 13 1 3.7179 -6.0850 1.1244 14 6 5.3944 -6.6706 2.3090 15 7 5.9495 -7.3700 1.3436 16 14 6.2334 -6.5455 3.9732 17 1 5.7942 -7.6723 4.8350 18 1 7.7060 -6.6066 3.7910 19 1 5.8672 -5.2582 4.6167 20 6 2.0842 -5.5755 3.5379 21 6 3.2000 -6.0098 4.4917 22 6 1.9954 -0.7707 1.1336 23 1 -0.3633 0.4471 0.9254 24 1 -0.3633 0.5778 -0.8498 25 1 -0.3633 -1.0249 -0.0754 26 1 1.5633 1.9258 -0.8329 27 1 1.7325 1.8609 0.9376 28 1 3.9098 2.3513 -0.1311 29 1 3.7813 0.8569 -1.0907 30 1 3.8888 1.0354 1.9559 31 1 5.1998 0.4715 0.8903 32 1 5.1576 -1.6490 2.1819 33 1 3.7280 -1.1950 3.1401 34 1 3.9062 -3.4996 1.3099 35 1 5.0761 -3.7578 3.4478 36 1 3.5278 -3.3541 4.2276 37 1 6.7946 -7.8213 1.4958 38 1 1.4445 -4.7511 3.8529 39 1 1.5952 -6.3515 2.9490 40 1 3.4445 -7.0713 4.5299 41 1 3.2940 -5.4709 5.4345 42 1 1.7326 -0.2709 2.0659 43 1 1.5635 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:46 Heat of formation + Delta-G solvation = -2.769004 kcal Electronic energy + Delta-G solvation = -19236.806927 eV Core-core repulsion = 16509.072550 eV Total energy + Delta-G solvation = -2727.734377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14008 -38.94752 -36.37342 -34.25750 -34.09884 -31.93098 -28.23275 -27.64854 -26.99439 -24.72225 -23.58109 -23.20303 -22.12074 -20.92847 -20.46033 -18.18493 -16.90719 -16.86152 -16.41219 -16.01586 -15.61112 -15.54018 -15.29012 -15.20907 -14.74632 -14.18076 -14.03160 -13.77833 -13.51707 -13.13593 -13.10641 -13.04281 -12.82600 -12.63905 -12.27671 -12.11877 -11.90789 -11.85948 -11.52955 -11.48392 -11.21971 -11.12706 -10.87140 -10.58404 -10.23375 -9.21188 -9.11557 -8.27287 -6.33242 1.35000 1.37813 1.50206 2.38016 3.05254 3.06791 3.11315 3.59413 3.93056 3.95256 4.05716 4.16013 4.20912 4.39247 4.45522 4.50598 4.55164 4.57670 4.60117 4.70221 4.73726 4.76010 4.81765 4.87594 4.90237 4.93644 4.95046 5.03639 5.06818 5.13768 5.16078 5.22913 5.39666 5.43989 5.52050 5.54175 5.76884 6.19249 6.25261 6.30998 6.39958 6.57836 6.77825 7.36624 8.88119 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.005051 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.042758 B = 5542.404136 C = 5875.347207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.563 5.563 3 C 0.054 3.946 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.074 4.074 7 H 0.058 0.942 8 C 0.066 3.934 9 N -0.680 5.680 10 C 0.107 3.893 11 C -0.020 4.020 12 C -0.479 4.479 13 H 0.033 0.967 14 C 0.021 3.979 15 N -0.950 5.950 16 Si 0.937 3.063 17 H -0.273 1.273 18 H -0.301 1.301 19 H -0.234 1.234 20 C -0.154 4.154 21 C -0.199 4.199 22 C 0.080 3.920 23 H 0.026 0.974 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.339 0.661 35 H 0.009 0.991 36 H 0.066 0.934 37 H 0.264 0.736 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 18.872 2.260 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.287 5.287 3 C -0.073 4.073 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.093 4.093 7 H 0.077 0.923 8 C -0.064 4.064 9 N -0.310 5.310 10 C -0.022 4.022 11 C -0.022 4.022 12 C -0.516 4.516 13 H 0.052 0.948 14 C -0.176 4.176 15 N -0.590 5.590 16 Si 0.763 3.237 17 H -0.198 1.198 18 H -0.228 1.228 19 H -0.157 1.157 20 C -0.191 4.191 21 C -0.237 4.237 22 C -0.048 4.048 23 H 0.045 0.955 24 H 0.098 0.902 25 H 0.081 0.919 26 H 0.101 0.899 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.027 0.973 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.046 0.954 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.101 18.709 2.034 20.115 hybrid contribution 1.328 -0.564 0.852 1.676 sum -5.773 18.145 2.887 19.259 Atomic orbital electron populations 1.22344 0.86584 1.02325 1.00812 1.61905 1.08416 1.14388 1.44026 1.22157 0.95883 0.88618 1.00689 1.21562 0.94291 1.00715 0.98465 1.21597 1.00077 0.94207 0.99211 1.21068 0.94862 0.95901 0.97486 0.92309 1.21994 0.96402 0.89172 0.98861 1.60447 1.63414 1.02068 1.05082 1.21485 0.95909 0.92154 0.92690 1.19331 0.96159 0.92610 0.94051 1.20435 1.04903 1.29700 0.96607 0.94850 1.25784 0.97634 0.94118 1.00081 1.70051 1.19342 1.34515 1.35063 0.85918 0.76240 0.80749 0.80841 1.19839 1.22832 1.15709 1.22687 0.91618 1.02295 1.02490 1.23020 1.06243 0.99853 0.94591 1.21870 0.94699 0.97825 0.90428 0.95507 0.90245 0.91897 0.89852 0.94869 0.89559 0.92058 0.91547 0.91525 0.95986 0.90873 0.84273 0.97290 0.91533 0.92761 0.88266 0.91123 0.91162 0.88296 0.95448 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.59 127.69 1.22 1.77 16 2 N -0.56 -13.38 4.91 -922.62 -4.53 -17.91 16 3 C 0.05 1.03 5.46 86.32 0.47 1.50 16 4 C -0.11 -2.07 6.09 30.65 0.19 -1.89 16 5 C -0.11 -2.36 5.29 30.68 0.16 -2.20 16 6 C -0.07 -1.96 2.53 -10.74 -0.03 -1.99 16 7 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 8 C 0.07 1.94 5.08 86.31 0.44 2.38 16 9 N -0.68 -24.94 5.97 -513.89 -3.07 -28.01 16 10 C 0.11 4.23 5.18 86.30 0.45 4.68 16 11 C -0.02 -0.92 1.01 -52.93 -0.05 -0.97 16 12 C -0.48 -26.70 8.74 25.60 0.22 -26.48 16 13 H 0.03 2.10 8.06 -2.91 -0.02 2.08 16 14 C 0.02 1.21 5.47 84.66 0.46 1.67 16 15 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 16 Si 0.94 44.43 24.88 68.60 1.71 46.13 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 18 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 19 H -0.23 -10.09 5.74 99.48 0.57 -9.52 16 20 C -0.15 -6.13 9.96 30.62 0.30 -5.82 16 21 C -0.20 -8.08 7.60 30.62 0.23 -7.85 16 22 C 0.08 2.10 4.63 86.32 0.40 2.50 16 23 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.08 1.32 8.09 -2.39 -0.02 1.30 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 27 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 34 H 0.34 14.23 8.12 -89.69 -0.73 13.50 16 35 H 0.01 0.38 6.66 -2.38 -0.02 0.36 16 36 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 37 H 0.26 15.51 8.31 -92.70 -0.77 14.73 16 38 H 0.10 3.43 8.14 -2.39 -0.02 3.42 16 39 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 40 H 0.07 3.06 7.27 -2.39 -0.02 3.04 16 41 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 2.11 7.77 -2.38 -0.02 2.09 16 Total: -1.00 -62.34 330.72 -1.04 -63.38 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.08 Total: 27.96 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 4.47 Total: -32.68 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -7.30 Total: -104.79 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.71 Total: 46.13 kcal Total: -62.34 -1.04 -63.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.611 kcal (2) G-P(sol) polarization free energy of solvation -62.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds