Wall clock time and date at job start Mon Mar 30 2020 03:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46839 * 111.00182 * 2 1 4 4 C 1.53031 * 109.52573 * 185.83852 * 3 2 1 5 5 C 1.53120 * 109.27974 * 300.81998 * 4 3 2 6 6 C 1.53123 * 109.16038 * 57.65190 * 5 4 3 7 7 C 1.46853 * 110.99898 * 124.20938 * 2 1 3 8 8 H 1.08997 * 109.46197 * 294.17888 * 7 2 1 9 9 C 1.53001 * 109.46072 * 54.14491 * 7 2 1 10 10 N 1.46906 * 109.46831 * 187.07935 * 9 7 2 11 11 C 1.46897 * 110.99883 * 185.24529 * 10 9 7 12 12 C 1.52995 * 109.47250 * 175.21052 * 11 10 9 13 13 C 1.50701 * 115.54979 * 305.72661 * 12 11 10 14 14 H 1.07995 * 120.00225 * 145.07769 * 13 12 11 15 15 C 1.37880 * 119.99757 * 325.07539 * 13 12 11 16 16 N 1.31515 * 119.99867 * 355.25858 * 15 13 12 17 17 Si 1.86802 * 119.99908 * 175.25401 * 15 13 12 18 18 H 1.48497 * 109.47194 * 60.00163 * 17 15 13 19 19 H 1.48504 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46980 * 299.99761 * 17 15 13 21 21 C 1.52998 * 117.50316 * 160.05564 * 12 11 10 22 22 C 1.53004 * 117.49933 * 91.39201 * 12 11 10 23 23 H 1.08999 * 109.47543 * 287.09382 * 1 2 3 24 24 H 1.09000 * 109.47117 * 47.09994 * 1 2 3 25 25 H 1.09001 * 109.47192 * 167.09573 * 1 2 3 26 26 H 1.09004 * 109.46309 * 305.85305 * 3 2 1 27 27 H 1.09005 * 109.46277 * 65.82993 * 3 2 1 28 28 H 1.09001 * 109.50584 * 60.76332 * 4 3 2 29 29 H 1.09005 * 109.50499 * 180.84322 * 4 3 2 30 30 H 1.09004 * 109.51929 * 297.74935 * 5 4 3 31 31 H 1.08996 * 109.52530 * 177.56310 * 5 4 3 32 32 H 1.08995 * 109.49978 * 182.40719 * 6 5 4 33 33 H 1.08994 * 109.50044 * 62.28745 * 6 5 4 34 34 H 1.09001 * 109.47057 * 307.07605 * 9 7 2 35 35 H 1.08999 * 109.47182 * 67.08339 * 9 7 2 36 36 H 1.00905 * 110.99616 * 61.29633 * 10 9 7 37 37 H 1.09003 * 109.47185 * 295.20734 * 11 10 9 38 38 H 1.08996 * 109.47210 * 55.20978 * 11 10 9 39 39 H 0.97001 * 119.99982 * 185.03194 * 16 15 13 40 40 H 1.08999 * 117.49758 * 359.97438 * 21 12 11 41 41 H 1.08997 * 117.50015 * 145.02233 * 21 12 11 42 42 H 1.09005 * 117.49796 * 214.98297 * 22 12 11 43 43 H 1.08998 * 117.49806 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1188 0.5369 1.0144 6 6 3.5181 -0.8715 1.0209 7 6 1.9952 -0.7708 1.1338 8 1 1.7324 -0.2709 2.0660 9 6 1.3890 -2.1755 1.1204 10 7 1.7807 -2.8895 2.3431 11 6 1.3206 -4.2841 2.3086 12 6 1.8476 -5.0256 3.5387 13 6 3.3389 -4.9626 3.7463 14 1 3.7437 -4.9232 4.7467 15 6 4.1865 -4.9551 2.6588 16 7 3.7003 -5.0970 1.4451 17 14 6.0255 -4.7435 2.9094 18 1 6.5399 -5.8485 3.7577 19 1 6.7108 -4.7697 1.5922 20 1 6.2876 -3.4434 3.5774 21 6 1.1314 -6.3144 3.9474 22 6 0.9611 -5.0448 4.7856 23 1 -0.3634 0.3021 0.9822 24 1 -0.3633 0.6996 -0.7528 25 1 -0.3633 -1.0017 -0.2295 26 1 1.5634 1.9257 -0.8330 27 1 1.7326 1.8607 0.9377 28 1 3.7814 0.8567 -1.0906 29 1 3.9098 2.3512 -0.1316 30 1 3.8886 1.0355 1.9560 31 1 5.1997 0.4714 0.8906 32 1 3.9098 -1.4302 1.8709 33 1 3.7813 -1.3836 0.0955 34 1 0.3025 -2.1019 1.0749 35 1 1.7532 -2.7201 0.2493 36 1 1.4365 -2.4154 3.1646 37 1 0.2308 -4.3074 2.3096 38 1 1.6935 -4.7675 1.4056 39 1 4.3013 -5.1651 0.6867 40 1 0.2845 -6.6338 3.3402 41 1 1.7388 -7.1164 4.3668 42 1 1.4565 -5.0122 5.7560 43 1 0.0022 -4.5295 4.7293 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:31 Heat of formation + Delta-G solvation = 27.510126 kcal Electronic energy + Delta-G solvation = -19825.902277 eV Core-core repulsion = 17099.480902 eV Total energy + Delta-G solvation = -2726.421375 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.04469 -36.84522 -34.19225 -33.26820 -31.92013 -30.49739 -26.78116 -25.88220 -25.13505 -23.15109 -22.42940 -21.11869 -20.55392 -19.42049 -18.76860 -16.23371 -15.45558 -15.21944 -14.75757 -14.43085 -14.33365 -13.91173 -13.76581 -13.05539 -13.02990 -12.83379 -12.63109 -12.21962 -11.86471 -11.50825 -11.32564 -11.25204 -11.16546 -10.83921 -10.58225 -10.49284 -10.39591 -10.28632 -10.05747 -9.99891 -9.81834 -9.21318 -8.83539 -8.58835 -8.10984 -7.94248 -7.10283 -5.77076 -3.84396 3.40534 3.45265 3.48726 4.06019 4.53567 4.96429 5.05620 5.14408 5.16474 5.33156 5.44883 5.51467 5.55726 5.70861 5.71779 5.72784 5.82312 5.90371 5.98888 6.02854 6.15450 6.19660 6.24191 6.33250 6.41813 6.52210 6.60962 6.68063 6.69525 6.76542 6.86412 6.99848 7.00470 7.23221 7.29399 7.38267 7.42204 7.73323 8.14789 8.31890 8.48606 8.72704 9.09418 9.76013 11.21306 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.007450 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.836839 B = 3757.732226 C = 4783.137977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.059 3.941 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.099 4.099 7 C 0.096 3.904 8 H 0.032 0.968 9 C 0.073 3.927 10 N -0.646 5.646 11 C 0.111 3.889 12 C 0.065 3.935 13 C -0.478 4.478 14 H 0.051 0.949 15 C 0.092 3.908 16 N -0.869 5.869 17 Si 0.888 3.112 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.209 4.209 22 C -0.220 4.220 23 H 0.021 0.979 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.009 0.991 35 H 0.077 0.923 36 H 0.317 0.683 37 H -0.026 1.026 38 H 0.117 0.883 39 H 0.256 0.744 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 10.905 -3.465 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.264 5.264 3 C -0.069 4.069 4 C -0.154 4.154 5 C -0.162 4.162 6 C -0.137 4.137 7 C -0.012 4.012 8 H 0.050 0.950 9 C -0.058 4.058 10 N -0.275 5.275 11 C -0.017 4.017 12 C 0.064 3.936 13 C -0.515 4.515 14 H 0.069 0.931 15 C -0.112 4.112 16 N -0.505 5.505 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.248 4.248 22 C -0.258 4.258 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.096 0.904 36 H 0.132 0.868 37 H -0.009 1.009 38 H 0.135 0.865 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.999 10.583 -4.357 11.831 hybrid contribution -0.414 0.581 1.135 1.341 sum -3.414 11.164 -3.222 12.111 Atomic orbital electron populations 1.22379 0.88065 1.02416 0.99519 1.61896 1.07010 1.12972 1.44572 1.22042 0.95810 0.89373 0.99653 1.21587 0.94382 0.99583 0.99809 1.21650 0.99831 0.97038 0.97676 1.21489 0.93066 0.95302 1.03865 1.21589 0.95967 0.93779 0.89908 0.95008 1.21904 0.94992 0.92884 0.95974 1.59984 1.63739 1.02483 1.01292 1.21616 0.90506 0.87421 1.02182 1.19009 0.92843 0.92571 0.89168 1.20228 0.88259 1.50804 0.92181 0.93067 1.24713 0.97738 0.93800 0.94952 1.69747 1.33757 1.48760 0.98280 0.86759 0.86048 0.78553 0.77009 1.20920 1.21490 1.20259 1.22959 1.03343 0.92952 1.05508 1.22923 1.01241 1.03843 0.97784 0.96055 0.92126 0.90970 0.91367 0.95502 0.91254 0.92251 0.92773 0.92167 0.89416 0.91565 0.97309 0.90428 0.86754 1.00862 0.86515 0.93355 0.92074 0.90555 0.90941 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.85 60.06 0.53 0.85 16 2 N -0.54 -7.90 4.75 -234.93 -1.12 -9.02 16 3 C 0.06 0.75 5.45 -3.84 -0.02 0.73 16 4 C -0.12 -1.44 6.09 -26.65 -0.16 -1.60 16 5 C -0.12 -1.77 6.00 -26.61 -0.16 -1.93 16 6 C -0.10 -1.72 5.26 -26.65 -0.14 -1.86 16 7 C 0.10 1.58 2.05 -67.72 -0.14 1.45 16 8 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 9 C 0.07 1.35 4.86 -3.82 -0.02 1.33 16 10 N -0.65 -13.69 5.58 -113.78 -0.63 -14.32 16 11 C 0.11 2.59 4.66 -3.83 -0.02 2.57 16 12 C 0.06 1.60 2.10 -155.66 -0.33 1.27 16 13 C -0.48 -12.90 8.75 -34.44 -0.30 -13.20 16 14 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 15 C 0.09 2.44 5.23 -17.82 -0.09 2.35 16 16 N -0.87 -23.40 10.51 55.43 0.58 -22.82 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.21 -4.81 9.96 -26.69 -0.27 -5.08 16 22 C -0.22 -4.87 9.92 -26.69 -0.26 -5.13 16 23 H 0.02 0.27 8.09 -51.93 -0.42 -0.15 16 24 H 0.06 0.66 7.93 -51.93 -0.41 0.25 16 25 H 0.07 0.96 6.60 -51.93 -0.34 0.62 16 26 H 0.07 0.76 7.99 -51.93 -0.41 0.34 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.77 7.84 -51.93 -0.41 1.36 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.01 0.16 6.12 -51.93 -0.32 -0.16 16 35 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 36 H 0.32 6.47 8.84 -39.29 -0.35 6.12 16 37 H -0.03 -0.59 8.09 -51.93 -0.42 -1.01 16 38 H 0.12 3.03 5.88 -51.93 -0.31 2.73 16 39 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 42 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 332.05 15.07 5.00 5.00 Total: -1.00 -26.56 332.05 -10.57 -37.13 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.00 Total: 6.09 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.38 Total: -18.27 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -1.17 Total: -46.16 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.56 -10.57 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.642 kcal (2) G-P(sol) polarization free energy of solvation -26.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds