Wall clock time and date at job start Mon Mar 30 2020 03:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46848 * 110.99928 * 2 1 4 4 C 1.53039 * 109.52325 * 174.16242 * 3 2 1 5 5 C 1.53121 * 109.27810 * 59.17712 * 4 3 2 6 6 C 1.53117 * 109.15328 * 302.34065 * 5 4 3 7 7 C 1.46843 * 110.99908 * 235.79187 * 2 1 3 8 8 H 1.08998 * 109.46188 * 65.83031 * 7 2 1 9 9 C 1.52997 * 109.46051 * 305.85517 * 7 2 1 10 10 N 1.46905 * 109.47102 * 176.72626 * 9 7 2 11 11 C 1.46904 * 111.00159 * 174.88763 * 10 9 7 12 12 C 1.52992 * 109.47312 * 185.20321 * 11 10 9 13 13 C 1.50696 * 115.55055 * 305.82324 * 12 11 10 14 14 H 1.08000 * 120.00386 * 143.88583 * 13 12 11 15 15 C 1.37880 * 119.99627 * 323.88165 * 13 12 11 16 16 N 1.31512 * 120.00144 * 1.66212 * 15 13 12 17 17 Si 1.86803 * 119.99747 * 181.66028 * 15 13 12 18 18 H 1.48502 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47334 * 120.00078 * 17 15 13 20 20 H 1.48499 * 109.47002 * 239.99998 * 17 15 13 21 21 C 1.53007 * 117.49985 * 160.14771 * 12 11 10 22 22 C 1.53006 * 117.50034 * 91.48931 * 12 11 10 23 23 H 1.08994 * 109.47249 * 182.58634 * 1 2 3 24 24 H 1.09007 * 109.46943 * 302.58636 * 1 2 3 25 25 H 1.09004 * 109.47245 * 62.58217 * 1 2 3 26 26 H 1.09002 * 109.46509 * 294.17784 * 3 2 1 27 27 H 1.09000 * 109.46622 * 54.14399 * 3 2 1 28 28 H 1.08999 * 109.50175 * 179.12320 * 4 3 2 29 29 H 1.08998 * 109.49948 * 299.23886 * 4 3 2 30 30 H 1.09006 * 109.52110 * 62.25236 * 5 4 3 31 31 H 1.08993 * 109.52120 * 182.44208 * 5 4 3 32 32 H 1.08998 * 109.51489 * 297.72946 * 6 5 4 33 33 H 1.08995 * 109.49410 * 177.60019 * 6 5 4 34 34 H 1.09000 * 109.47431 * 56.72737 * 9 7 2 35 35 H 1.08997 * 109.47093 * 296.72704 * 9 7 2 36 36 H 1.00899 * 111.00110 * 298.84462 * 10 9 7 37 37 H 1.09008 * 109.46808 * 305.20543 * 11 10 9 38 38 H 1.08995 * 109.46940 * 65.20367 * 11 10 9 39 39 H 0.97006 * 119.99613 * 185.00781 * 16 15 13 40 40 H 1.08993 * 117.49686 * 359.97438 * 21 12 11 41 41 H 1.08994 * 117.49653 * 145.02331 * 21 12 11 42 42 H 1.09000 * 117.50124 * 214.98354 * 22 12 11 43 43 H 1.09007 * 117.49277 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5182 -0.8715 -1.0206 7 6 1.9953 -0.7707 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3891 -2.1754 -1.1204 10 7 1.8544 -2.9208 -2.2977 11 6 1.3900 -4.3139 -2.2562 12 6 1.9990 -5.0895 -3.4259 13 6 1.7718 -4.4918 -4.7905 14 1 2.5440 -4.5548 -5.5431 15 6 0.5782 -3.8646 -5.0784 16 7 -0.3494 -3.7591 -4.1521 17 14 0.2786 -3.1646 -6.7842 18 1 1.4689 -3.4122 -7.6370 19 1 -0.9078 -3.8227 -7.3880 20 1 0.0363 -1.7029 -6.6839 21 6 2.0340 -6.6155 -3.3199 22 6 3.3274 -5.8084 -3.1818 23 1 -0.3633 -1.0266 0.0464 24 1 -0.3633 0.5535 0.8660 25 1 -0.3634 0.4732 -0.9123 26 1 1.7325 1.8609 -0.9376 27 1 1.5635 1.9258 0.8329 28 1 3.9099 2.3513 0.1310 29 1 3.7814 0.8568 1.0905 30 1 3.8887 1.0355 -1.9561 31 1 5.1997 0.4714 -0.8906 32 1 3.7811 -1.3835 -0.0950 33 1 3.9100 -1.4303 -1.8704 34 1 0.3018 -2.1022 -1.1431 35 1 1.6993 -2.6964 -0.2146 36 1 1.5629 -2.4677 -3.1509 37 1 1.6989 -4.7719 -1.3164 38 1 0.3030 -4.3369 -2.3316 39 1 -1.2158 -3.3835 -4.3739 40 1 1.6237 -7.0667 -2.4166 41 1 1.8932 -7.1870 -4.2372 42 1 4.0368 -5.8493 -4.0083 43 1 3.7672 -5.7290 -2.1876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:34 Heat of formation + Delta-G solvation = 21.635015 kcal Electronic energy + Delta-G solvation = -19694.227919 eV Core-core repulsion = 16967.551780 eV Total energy + Delta-G solvation = -2726.676139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.05124 -36.85705 -34.13902 -33.28589 -32.16757 -30.44513 -26.76720 -25.92738 -25.28776 -23.14320 -22.40238 -21.05536 -20.54243 -19.46334 -18.85504 -16.19868 -15.48182 -15.24491 -14.87853 -14.48096 -14.30806 -13.94867 -13.76789 -13.41955 -12.93535 -12.73243 -12.40081 -12.16956 -12.05145 -11.50650 -11.38145 -11.32366 -11.11557 -10.91726 -10.71098 -10.57812 -10.39028 -10.36100 -10.16351 -10.07076 -9.80992 -9.29374 -8.89802 -8.69110 -8.12655 -8.10214 -7.08050 -5.95073 -4.11152 3.22938 3.32529 3.37101 4.08250 4.34280 4.94249 5.01048 5.05065 5.13063 5.32465 5.43563 5.52629 5.62469 5.65169 5.71774 5.75198 5.85381 5.95156 6.00932 6.06532 6.14993 6.17449 6.24307 6.34321 6.47171 6.52113 6.54403 6.58718 6.77658 6.81478 6.84266 6.90655 7.02025 7.28540 7.31629 7.39340 7.41916 7.64061 8.00975 8.38223 8.47392 8.72893 8.93863 9.49349 10.93613 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.006380 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.582838 B = 4387.809128 C = 4849.161773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.100 4.100 7 C 0.092 3.908 8 H 0.035 0.965 9 C 0.067 3.933 10 N -0.671 5.671 11 C 0.108 3.892 12 C 0.057 3.943 13 C -0.467 4.467 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.210 4.210 22 C -0.203 4.203 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.022 0.978 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.023 0.977 35 H 0.062 0.938 36 H 0.352 0.648 37 H 0.018 0.982 38 H 0.078 0.922 39 H 0.258 0.742 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 8.522 7.585 11.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.137 4.137 7 C -0.017 4.017 8 H 0.053 0.947 9 C -0.063 4.063 10 N -0.303 5.303 11 C -0.021 4.021 12 C 0.056 3.944 13 C -0.505 4.505 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.249 4.249 22 C -0.241 4.241 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.172 0.828 37 H 0.037 0.963 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.638 8.293 8.314 12.294 hybrid contribution -1.525 0.769 -1.864 2.528 sum 2.113 9.062 6.450 11.322 Atomic orbital electron populations 1.22427 0.87800 1.02722 0.99780 1.61918 1.07291 1.12899 1.44288 1.22047 0.95676 0.89534 0.99825 1.21580 0.94487 0.99620 0.99622 1.21642 0.99664 0.96939 0.97935 1.21494 0.93484 0.95589 1.03171 1.21586 0.95552 0.94126 0.90406 0.94701 1.21883 0.96142 0.92457 0.95860 1.60419 1.62692 1.03188 1.04040 1.21452 1.00597 0.86745 0.93334 1.18973 0.92453 0.87941 0.95027 1.20664 1.00491 1.33384 0.95994 0.92294 1.24992 0.96340 0.95349 0.96962 1.69896 1.04912 1.46431 1.31613 0.86527 0.78232 0.78680 0.84604 1.19727 1.21071 1.21046 1.22967 1.02790 0.99086 1.00012 1.22819 0.91895 1.09732 0.99631 0.90536 0.92046 0.95973 0.95382 0.91337 0.92201 0.91318 0.92614 0.92144 0.91821 0.89732 0.95933 0.91964 0.82812 0.96315 0.90404 0.93127 0.91913 0.90717 0.91109 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.10 60.07 0.55 0.84 16 2 N -0.54 -7.95 4.75 -234.92 -1.11 -9.07 16 3 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 4 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 5 C -0.12 -1.61 6.00 -26.61 -0.16 -1.77 16 6 C -0.10 -1.55 5.23 -26.65 -0.14 -1.69 16 7 C 0.09 1.52 2.11 -67.72 -0.14 1.38 16 8 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 9 C 0.07 1.27 4.78 -3.82 -0.02 1.25 16 10 N -0.67 -14.64 5.78 -113.78 -0.66 -15.30 16 11 C 0.11 2.54 4.76 -3.83 -0.02 2.52 16 12 C 0.06 1.40 2.15 -155.66 -0.33 1.07 16 13 C -0.47 -12.39 8.46 -34.44 -0.29 -12.68 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.66 4.58 -17.82 -0.08 1.58 16 16 N -0.89 -23.39 9.89 55.43 0.55 -22.84 16 17 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C -0.21 -4.82 9.96 -26.69 -0.27 -5.08 16 22 C -0.20 -4.56 9.92 -26.69 -0.26 -4.83 16 23 H 0.08 1.12 6.04 -51.93 -0.31 0.81 16 24 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 25 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.77 8.10 -51.93 -0.42 0.34 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.46 7.72 -51.93 -0.40 1.06 16 34 H 0.02 0.45 6.10 -51.93 -0.32 0.13 16 35 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 36 H 0.35 8.45 6.82 -39.29 -0.27 8.18 16 37 H 0.02 0.42 8.03 -51.92 -0.42 0.01 16 38 H 0.08 2.02 5.92 -51.93 -0.31 1.72 16 39 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -25.73 328.68 -10.55 -36.28 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.90 Total: 8.72 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -1.35 Total: -18.22 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -1.22 Total: -47.21 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -25.73 -10.55 -36.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.916 kcal (2) G-P(sol) polarization free energy of solvation -25.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds