Wall clock time and date at job start Mon Mar 30 2020 03:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46848 * 110.99928 * 2 1 4 4 C 1.53039 * 109.52325 * 174.16242 * 3 2 1 5 5 C 1.53121 * 109.27810 * 59.17712 * 4 3 2 6 6 C 1.53117 * 109.15328 * 302.34065 * 5 4 3 7 7 C 1.46843 * 110.99908 * 235.79187 * 2 1 3 8 8 H 1.08998 * 109.46188 * 65.83031 * 7 2 1 9 9 C 1.52997 * 109.46051 * 305.85517 * 7 2 1 10 10 N 1.46905 * 109.47102 * 176.72626 * 9 7 2 11 11 C 1.46904 * 111.00159 * 174.88763 * 10 9 7 12 12 C 1.52992 * 109.47312 * 185.20321 * 11 10 9 13 13 C 1.50696 * 115.55055 * 305.82324 * 12 11 10 14 14 H 1.08000 * 120.00386 * 143.88583 * 13 12 11 15 15 C 1.37880 * 119.99627 * 323.88165 * 13 12 11 16 16 N 1.31512 * 120.00144 * 1.66212 * 15 13 12 17 17 Si 1.86803 * 119.99747 * 181.66028 * 15 13 12 18 18 H 1.48502 * 109.47111 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47334 * 120.00078 * 17 15 13 20 20 H 1.48499 * 109.47002 * 239.99998 * 17 15 13 21 21 C 1.53007 * 117.49985 * 160.14771 * 12 11 10 22 22 C 1.53006 * 117.50034 * 91.48931 * 12 11 10 23 23 H 1.08994 * 109.47249 * 182.58634 * 1 2 3 24 24 H 1.09007 * 109.46943 * 302.58636 * 1 2 3 25 25 H 1.09004 * 109.47245 * 62.58217 * 1 2 3 26 26 H 1.09002 * 109.46509 * 294.17784 * 3 2 1 27 27 H 1.09000 * 109.46622 * 54.14399 * 3 2 1 28 28 H 1.08999 * 109.50175 * 179.12320 * 4 3 2 29 29 H 1.08998 * 109.49948 * 299.23886 * 4 3 2 30 30 H 1.09006 * 109.52110 * 62.25236 * 5 4 3 31 31 H 1.08993 * 109.52120 * 182.44208 * 5 4 3 32 32 H 1.08998 * 109.51489 * 297.72946 * 6 5 4 33 33 H 1.08995 * 109.49410 * 177.60019 * 6 5 4 34 34 H 1.09000 * 109.47431 * 56.72737 * 9 7 2 35 35 H 1.08997 * 109.47093 * 296.72704 * 9 7 2 36 36 H 1.00899 * 111.00110 * 298.84462 * 10 9 7 37 37 H 1.09008 * 109.46808 * 305.20543 * 11 10 9 38 38 H 1.08995 * 109.46940 * 65.20367 * 11 10 9 39 39 H 0.97006 * 119.99613 * 185.00781 * 16 15 13 40 40 H 1.08993 * 117.49686 * 359.97438 * 21 12 11 41 41 H 1.08994 * 117.49653 * 145.02331 * 21 12 11 42 42 H 1.09000 * 117.50124 * 214.98354 * 22 12 11 43 43 H 1.09007 * 117.49277 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1467 5 6 4.1188 0.5370 -1.0144 6 6 3.5182 -0.8715 -1.0206 7 6 1.9953 -0.7707 -1.1337 8 1 1.7326 -0.2707 -2.0660 9 6 1.3891 -2.1754 -1.1204 10 7 1.8544 -2.9208 -2.2977 11 6 1.3900 -4.3139 -2.2562 12 6 1.9990 -5.0895 -3.4259 13 6 1.7718 -4.4918 -4.7905 14 1 2.5440 -4.5548 -5.5431 15 6 0.5782 -3.8646 -5.0784 16 7 -0.3494 -3.7591 -4.1521 17 14 0.2786 -3.1646 -6.7842 18 1 1.4689 -3.4122 -7.6370 19 1 -0.9078 -3.8227 -7.3880 20 1 0.0363 -1.7029 -6.6839 21 6 2.0340 -6.6155 -3.3199 22 6 3.3274 -5.8084 -3.1818 23 1 -0.3633 -1.0266 0.0464 24 1 -0.3633 0.5535 0.8660 25 1 -0.3634 0.4732 -0.9123 26 1 1.7325 1.8609 -0.9376 27 1 1.5635 1.9258 0.8329 28 1 3.9099 2.3513 0.1310 29 1 3.7814 0.8568 1.0905 30 1 3.8887 1.0355 -1.9561 31 1 5.1997 0.4714 -0.8906 32 1 3.7811 -1.3835 -0.0950 33 1 3.9100 -1.4303 -1.8704 34 1 0.3018 -2.1022 -1.1431 35 1 1.6993 -2.6964 -0.2146 36 1 1.5629 -2.4677 -3.1509 37 1 1.6989 -4.7719 -1.3164 38 1 0.3030 -4.3369 -2.3316 39 1 -1.2158 -3.3835 -4.3739 40 1 1.6237 -7.0667 -2.4166 41 1 1.8932 -7.1870 -4.2372 42 1 4.0368 -5.8493 -4.0083 43 1 3.7672 -5.7290 -2.1876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:33 Heat of formation + Delta-G solvation = 7.050086 kcal Electronic energy + Delta-G solvation = -19694.860369 eV Core-core repulsion = 16967.551780 eV Total energy + Delta-G solvation = -2727.308589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27523 -38.68190 -35.70684 -34.42900 -34.13899 -31.80760 -28.09559 -27.59002 -26.95969 -24.66958 -23.61093 -22.86475 -21.87764 -20.93351 -20.49277 -18.10107 -16.86904 -16.75583 -16.39740 -16.02891 -15.68525 -15.45790 -15.10150 -14.85644 -14.55878 -14.03979 -13.91477 -13.63816 -13.34151 -13.08827 -12.90989 -12.82404 -12.63760 -12.56797 -12.41365 -12.21565 -11.99351 -11.82618 -11.56105 -11.31120 -11.13745 -11.08111 -10.84558 -10.55365 -10.03661 -9.30660 -8.87787 -7.92432 -6.15918 1.38600 1.43730 1.53026 2.41780 2.87494 3.05268 3.62075 3.82723 3.89737 4.02249 4.09487 4.18031 4.35685 4.40829 4.47432 4.52084 4.59330 4.64528 4.66898 4.77087 4.87732 4.88180 4.93118 4.99051 5.02085 5.03582 5.07894 5.11831 5.18157 5.18796 5.29364 5.42493 5.44799 5.55448 5.58414 5.63429 6.02132 6.11444 6.20827 6.46063 6.61076 6.79458 6.97902 7.46098 8.92696 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.006380 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.582838 B = 4387.809128 C = 4849.161773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.053 3.947 4 C -0.110 4.110 5 C -0.121 4.121 6 C -0.095 4.095 7 C 0.100 3.900 8 H 0.015 0.985 9 C 0.074 3.926 10 N -0.668 5.668 11 C 0.119 3.881 12 C 0.025 3.975 13 C -0.486 4.486 14 H 0.046 0.954 15 C 0.031 3.969 16 N -0.902 5.902 17 Si 0.946 3.054 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.206 4.206 22 C -0.187 4.187 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.014 0.986 26 H 0.023 0.977 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.011 0.989 35 H 0.062 0.938 36 H 0.338 0.662 37 H 0.025 0.975 38 H 0.052 0.948 39 H 0.258 0.742 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 9.722 8.411 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.268 5.268 3 C -0.074 4.074 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.133 4.133 7 C -0.008 4.008 8 H 0.033 0.967 9 C -0.056 4.056 10 N -0.299 5.299 11 C -0.010 4.010 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.065 0.935 15 C -0.168 4.168 16 N -0.542 5.542 17 Si 0.773 3.227 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.208 1.208 21 C -0.245 4.245 22 C -0.224 4.224 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.033 0.967 26 H 0.041 0.959 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.156 0.844 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.284 9.493 9.155 13.867 hybrid contribution -1.731 0.381 -2.089 2.740 sum 2.553 9.874 7.066 12.407 Atomic orbital electron populations 1.22440 0.87391 1.02217 1.00584 1.61955 1.07760 1.14253 1.42784 1.22197 0.96563 0.88172 1.00478 1.21574 0.93564 1.00813 0.98822 1.21622 1.00542 0.95179 0.98539 1.21409 0.92626 0.97292 1.01995 1.21406 0.96302 0.92709 0.90423 0.96737 1.21866 0.95567 0.93675 0.94525 1.60426 1.62516 1.02667 1.04261 1.21237 0.98865 0.87720 0.93207 1.19131 0.94633 0.89029 0.94737 1.20783 1.00567 1.34373 0.96704 0.93537 1.25520 0.96106 0.95494 0.99710 1.70024 1.04940 1.46566 1.32641 0.85678 0.77820 0.78022 0.81159 1.19770 1.20963 1.20755 1.22968 1.03095 0.97978 1.00430 1.22802 0.91233 1.07982 1.00420 0.91930 0.89454 0.96709 0.95870 0.89170 0.89662 0.91117 0.93051 0.90608 0.91993 0.91943 0.97077 0.91953 0.84373 0.95686 0.93001 0.93259 0.90590 0.91139 0.90966 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.10 127.69 1.16 1.74 16 2 N -0.54 -15.31 4.75 -897.15 -4.26 -19.57 16 3 C 0.05 1.23 5.46 86.33 0.47 1.70 16 4 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 5 C -0.12 -2.92 6.00 30.67 0.18 -2.74 16 6 C -0.10 -2.91 5.23 30.65 0.16 -2.75 16 7 C 0.10 3.33 2.11 44.94 0.09 3.42 16 8 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 9 C 0.07 2.83 4.78 86.30 0.41 3.24 16 10 N -0.67 -29.67 5.78 -513.88 -2.97 -32.64 16 11 C 0.12 5.68 4.76 86.30 0.41 6.09 16 12 C 0.03 1.25 2.15 -52.93 -0.11 1.14 16 13 C -0.49 -26.05 8.46 25.60 0.22 -25.83 16 14 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 15 C 0.03 1.61 4.58 84.66 0.39 2.00 16 16 N -0.90 -48.11 9.89 21.45 0.21 -47.89 16 17 Si 0.95 42.35 29.54 68.60 2.03 44.38 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 C -0.21 -9.33 9.96 30.62 0.30 -9.02 16 22 C -0.19 -8.22 9.92 30.62 0.30 -7.91 16 23 H 0.06 1.83 6.04 -2.39 -0.01 1.82 16 24 H 0.09 1.86 8.12 -2.38 -0.02 1.84 16 25 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.17 7.72 -2.39 -0.02 2.15 16 34 H 0.01 0.45 6.10 -2.39 -0.01 0.44 16 35 H 0.06 2.37 8.09 -2.39 -0.02 2.35 16 36 H 0.34 16.67 6.82 -89.69 -0.61 16.06 16 37 H 0.02 1.13 8.03 -2.38 -0.02 1.11 16 38 H 0.05 2.76 5.92 -2.39 -0.01 2.75 16 39 H 0.26 13.29 8.32 -92.70 -0.77 12.52 16 40 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 Total: -1.00 -54.30 328.68 -0.47 -54.77 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: 0.34 Total: 31.94 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 4.18 Total: -30.98 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -7.02 Total: -100.10 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -54.30 -0.47 -54.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.820 kcal (2) G-P(sol) polarization free energy of solvation -54.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds