Wall clock time and date at job start Mon Mar 30 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00180 * 2 1 4 4 C 1.52998 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.53947 * 55.09940 * 4 3 2 6 6 C 1.53126 * 109.50384 * 295.00030 * 4 3 2 7 7 C 1.53111 * 109.16355 * 182.40823 * 6 4 3 8 8 C 1.53039 * 109.28258 * 57.65106 * 7 6 4 9 9 N 1.46852 * 109.51442 * 300.83267 * 8 7 6 10 10 C 1.46899 * 110.99829 * 185.83413 * 9 8 7 11 11 C 1.53001 * 109.47473 * 76.72008 * 10 9 8 12 12 C 1.50701 * 115.54807 * 291.88543 * 11 10 9 13 13 H 1.07998 * 119.99894 * 143.08915 * 12 11 10 14 14 C 1.37879 * 119.99707 * 323.08192 * 12 11 10 15 15 N 1.31509 * 120.00375 * 336.29435 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 156.29127 * 14 12 11 17 17 H 1.48508 * 109.47094 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46890 * 119.99894 * 16 14 12 19 19 H 1.48498 * 109.47210 * 240.00474 * 16 14 12 20 20 C 1.53001 * 117.49938 * 146.21531 * 11 10 9 21 21 C 1.52998 * 117.49985 * 77.55553 * 11 10 9 22 22 C 1.46819 * 111.21340 * 61.74214 * 9 8 7 23 23 H 1.09003 * 109.47570 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47320 * 300.00452 * 1 2 3 25 25 H 1.09000 * 109.47064 * 60.00004 * 1 2 3 26 26 H 1.00903 * 110.99858 * 236.04583 * 2 1 3 27 27 H 1.09001 * 109.47072 * 59.99859 * 3 2 1 28 28 H 1.08994 * 109.46884 * 299.99752 * 3 2 1 29 29 H 1.08997 * 109.52417 * 62.49813 * 6 4 3 30 30 H 1.09004 * 109.51879 * 302.30721 * 6 4 3 31 31 H 1.09006 * 109.50160 * 297.71125 * 7 6 4 32 32 H 1.09001 * 109.53928 * 177.61170 * 7 6 4 33 33 H 1.09005 * 109.46173 * 60.83524 * 8 7 6 34 34 H 1.08997 * 109.46884 * 180.82061 * 8 7 6 35 35 H 1.09002 * 109.46800 * 196.71958 * 10 9 8 36 36 H 1.08994 * 109.47138 * 316.71459 * 10 9 8 37 37 H 0.97003 * 120.00168 * 186.05889 * 15 14 12 38 38 H 1.09003 * 117.49963 * 359.97438 * 20 11 10 39 39 H 1.08998 * 117.49987 * 145.02343 * 20 11 10 40 40 H 1.09004 * 117.49930 * 214.98262 * 21 11 10 41 41 H 1.09007 * 117.49819 * 359.97134 * 21 11 10 42 42 H 1.08996 * 109.47076 * 178.24195 * 22 9 8 43 43 H 1.09002 * 109.45394 * 58.25795 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8732 0.7335 -0.8433 6 6 4.0202 0.7069 1.3072 7 6 5.5511 0.7247 1.3244 8 6 6.0415 2.1656 1.1652 9 7 5.5416 2.7169 -0.1008 10 6 6.1052 4.0497 -0.3535 11 6 7.5496 3.9093 -0.8382 12 6 8.5319 3.4002 0.1849 13 1 9.3279 2.7348 -0.1150 14 6 8.4144 3.7840 1.5040 15 7 7.7930 4.9017 1.8109 16 14 9.1378 2.7163 2.8554 17 1 9.7808 1.5216 2.2514 18 1 10.1516 3.4944 3.6116 19 1 8.0566 2.2842 3.7771 20 6 8.0562 4.9339 -1.8554 21 6 7.7689 3.4961 -2.2949 22 6 4.0740 2.7539 -0.1214 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8305 -0.5261 -0.7814 27 1 1.6459 1.8948 0.8900 28 1 1.6460 1.8947 -0.8900 29 1 3.6671 -0.3220 1.3768 30 1 3.6398 1.2815 2.1517 31 1 5.9313 0.1180 0.5025 32 1 5.9098 0.3208 2.2711 33 1 5.6723 2.7687 1.9948 34 1 7.1314 2.1802 1.1624 35 1 5.5135 4.5556 -1.1165 36 1 6.0859 4.6329 0.5671 37 1 7.7861 5.2167 2.7283 38 1 7.3604 5.7077 -2.1795 39 1 9.1001 5.2394 -1.7847 40 1 8.6239 2.8562 -2.5133 41 1 6.8841 3.3237 -2.9079 42 1 3.7349 3.1956 -1.0584 43 1 3.7143 3.3541 0.7144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:14 Heat of formation + Delta-G solvation = 27.421379 kcal Electronic energy + Delta-G solvation = -19933.994112 eV Core-core repulsion = 17207.568888 eV Total energy + Delta-G solvation = -2726.425224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.76916 -36.76231 -35.38453 -32.45279 -32.07805 -30.74877 -26.58937 -25.69580 -25.46783 -23.35298 -22.14928 -21.02611 -20.82427 -19.07797 -18.92809 -16.17335 -15.75076 -14.95371 -14.82967 -14.59846 -14.32783 -13.93769 -13.87284 -13.28105 -13.06416 -12.89408 -12.54039 -12.13025 -11.88284 -11.79103 -11.63326 -11.36851 -10.90355 -10.78050 -10.66603 -10.48938 -10.32955 -10.18649 -10.03674 -9.76882 -9.64224 -9.12975 -8.92086 -8.54585 -8.48033 -7.97119 -7.13895 -6.11424 -3.98813 3.22529 3.34092 3.38234 4.17369 4.32957 4.75942 4.98027 5.13383 5.20060 5.29287 5.38505 5.44032 5.66218 5.71535 5.73978 5.76843 5.95026 5.97031 6.06959 6.16975 6.23271 6.37747 6.41931 6.49509 6.56115 6.62541 6.69323 6.75669 6.86551 6.90173 6.93007 7.02750 7.07735 7.25935 7.30167 7.39270 7.47883 7.53455 7.92114 8.25511 8.29807 8.52476 8.90555 9.46841 10.90114 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.006806 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.740809 B = 4113.256789 C = 4850.990765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.064 3.936 4 C -0.079 4.079 5 H 0.074 0.926 6 C -0.102 4.102 7 C -0.122 4.122 8 C 0.041 3.959 9 N -0.521 5.521 10 C 0.088 3.912 11 C 0.065 3.935 12 C -0.489 4.489 13 H 0.062 0.938 14 C 0.081 3.919 15 N -0.866 5.866 16 Si 0.863 3.137 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.205 4.205 21 C -0.198 4.198 22 C 0.061 3.939 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.018 0.982 26 H 0.341 0.659 27 H 0.069 0.931 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.015 0.985 34 H 0.125 0.875 35 H 0.032 0.968 36 H 0.079 0.921 37 H 0.262 0.738 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -6.422 -2.129 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.066 4.066 4 C -0.098 4.098 5 H 0.093 0.907 6 C -0.139 4.139 7 C -0.160 4.160 8 C -0.086 4.086 9 N -0.245 5.245 10 C -0.039 4.039 11 C 0.064 3.936 12 C -0.525 4.525 13 H 0.080 0.920 14 C -0.123 4.123 15 N -0.501 5.501 16 Si 0.689 3.311 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.244 4.244 21 C -0.235 4.235 22 C -0.068 4.068 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.158 0.842 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.142 0.858 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.701 -6.707 -1.636 12.735 hybrid contribution -0.168 0.452 0.441 0.654 sum -10.869 -6.255 -1.195 12.597 Atomic orbital electron populations 1.22172 0.88303 1.01502 1.00184 1.60373 1.07178 1.14762 1.49961 1.22037 0.95480 0.88921 1.00162 1.21142 0.92284 0.97160 0.99194 0.90739 1.21486 0.95792 1.00481 0.96188 1.21692 0.95020 0.98508 1.00769 1.22699 1.04856 0.92278 0.88806 1.61739 1.03603 1.25152 1.33978 1.21671 0.93537 0.87890 1.00765 1.18790 0.92454 0.95774 0.86580 1.20458 1.12416 1.28668 0.91001 0.91963 1.24916 0.94502 0.94411 0.98473 1.69984 1.42667 1.18294 1.19204 0.87058 0.79255 0.82050 0.82760 1.19026 1.21113 1.20127 1.22958 1.00340 0.91153 1.09929 1.22730 1.00805 0.97638 1.02336 1.22011 0.90552 0.94869 0.99391 0.91687 0.91924 0.96317 0.84197 0.91292 0.95442 0.91744 0.93270 0.91644 0.92879 0.96708 0.85805 0.94995 0.90336 0.92800 0.92172 0.90628 0.91134 0.91554 0.92198 0.96158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.06 0.64 0.91 16 2 N -0.69 -7.93 6.36 -121.13 -0.77 -8.70 16 3 C 0.06 0.81 5.08 -3.82 -0.02 0.79 16 4 C -0.08 -1.19 2.49 -90.53 -0.23 -1.42 16 5 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 6 C -0.10 -1.62 5.14 -26.61 -0.14 -1.76 16 7 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 8 C 0.04 0.89 4.33 -3.83 -0.02 0.87 16 9 N -0.52 -11.08 4.58 -234.69 -1.07 -12.16 16 10 C 0.09 2.07 4.75 -3.82 -0.02 2.06 16 11 C 0.06 1.60 1.91 -155.66 -0.30 1.31 16 12 C -0.49 -13.00 7.23 -34.44 -0.25 -13.24 16 13 H 0.06 1.69 7.92 -52.49 -0.42 1.28 16 14 C 0.08 2.12 3.33 -17.82 -0.06 2.06 16 15 N -0.87 -23.42 11.33 55.43 0.63 -22.80 16 16 Si 0.86 20.20 28.04 -169.99 -4.77 15.44 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.21 -4.77 9.91 -26.69 -0.26 -5.03 16 21 C -0.20 -4.43 9.96 -26.69 -0.27 -4.70 16 22 C 0.06 1.09 4.70 -3.85 -0.02 1.07 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.34 3.58 8.81 -39.29 -0.35 3.23 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.96 7.83 -51.93 -0.41 0.55 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.12 3.02 2.48 -51.93 -0.13 2.89 16 35 H 0.03 0.71 7.70 -51.93 -0.40 0.31 16 36 H 0.08 2.05 5.69 -51.93 -0.30 1.75 16 37 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 42 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -26.66 326.07 -10.04 -36.70 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.88 Total: 6.09 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.09 Total: -19.49 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -1.22 Total: -43.66 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.77 Total: 15.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.66 -10.04 -36.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.123 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds