Wall clock time and date at job start Mon Mar 30 2020 04:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00180 * 2 1 4 4 C 1.52998 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.53947 * 55.09940 * 4 3 2 6 6 C 1.53126 * 109.50384 * 295.00030 * 4 3 2 7 7 C 1.53111 * 109.16355 * 182.40823 * 6 4 3 8 8 C 1.53039 * 109.28258 * 57.65106 * 7 6 4 9 9 N 1.46852 * 109.51442 * 300.83267 * 8 7 6 10 10 C 1.46899 * 110.99829 * 185.83413 * 9 8 7 11 11 C 1.53001 * 109.47473 * 76.72008 * 10 9 8 12 12 C 1.50701 * 115.54807 * 291.88543 * 11 10 9 13 13 H 1.07998 * 119.99894 * 143.08915 * 12 11 10 14 14 C 1.37879 * 119.99707 * 323.08192 * 12 11 10 15 15 N 1.31509 * 120.00375 * 336.29435 * 14 12 11 16 16 Si 1.86801 * 119.99742 * 156.29127 * 14 12 11 17 17 H 1.48508 * 109.47094 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46890 * 119.99894 * 16 14 12 19 19 H 1.48498 * 109.47210 * 240.00474 * 16 14 12 20 20 C 1.53001 * 117.49938 * 146.21531 * 11 10 9 21 21 C 1.52998 * 117.49985 * 77.55553 * 11 10 9 22 22 C 1.46819 * 111.21340 * 61.74214 * 9 8 7 23 23 H 1.09003 * 109.47570 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47320 * 300.00452 * 1 2 3 25 25 H 1.09000 * 109.47064 * 60.00004 * 1 2 3 26 26 H 1.00903 * 110.99858 * 236.04583 * 2 1 3 27 27 H 1.09001 * 109.47072 * 59.99859 * 3 2 1 28 28 H 1.08994 * 109.46884 * 299.99752 * 3 2 1 29 29 H 1.08997 * 109.52417 * 62.49813 * 6 4 3 30 30 H 1.09004 * 109.51879 * 302.30721 * 6 4 3 31 31 H 1.09006 * 109.50160 * 297.71125 * 7 6 4 32 32 H 1.09001 * 109.53928 * 177.61170 * 7 6 4 33 33 H 1.09005 * 109.46173 * 60.83524 * 8 7 6 34 34 H 1.08997 * 109.46884 * 180.82061 * 8 7 6 35 35 H 1.09002 * 109.46800 * 196.71958 * 10 9 8 36 36 H 1.08994 * 109.47138 * 316.71459 * 10 9 8 37 37 H 0.97003 * 120.00168 * 186.05889 * 15 14 12 38 38 H 1.09003 * 117.49963 * 359.97438 * 20 11 10 39 39 H 1.08998 * 117.49987 * 145.02343 * 20 11 10 40 40 H 1.09004 * 117.49930 * 214.98262 * 21 11 10 41 41 H 1.09007 * 117.49819 * 359.97134 * 21 11 10 42 42 H 1.08996 * 109.47076 * 178.24195 * 22 9 8 43 43 H 1.09002 * 109.45394 * 58.25795 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8732 0.7335 -0.8433 6 6 4.0202 0.7069 1.3072 7 6 5.5511 0.7247 1.3244 8 6 6.0415 2.1656 1.1652 9 7 5.5416 2.7169 -0.1008 10 6 6.1052 4.0497 -0.3535 11 6 7.5496 3.9093 -0.8382 12 6 8.5319 3.4002 0.1849 13 1 9.3279 2.7348 -0.1150 14 6 8.4144 3.7840 1.5040 15 7 7.7930 4.9017 1.8109 16 14 9.1378 2.7163 2.8554 17 1 9.7808 1.5216 2.2514 18 1 10.1516 3.4944 3.6116 19 1 8.0566 2.2842 3.7771 20 6 8.0562 4.9339 -1.8554 21 6 7.7689 3.4961 -2.2949 22 6 4.0740 2.7539 -0.1214 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8305 -0.5261 -0.7814 27 1 1.6459 1.8948 0.8900 28 1 1.6460 1.8947 -0.8900 29 1 3.6671 -0.3220 1.3768 30 1 3.6398 1.2815 2.1517 31 1 5.9313 0.1180 0.5025 32 1 5.9098 0.3208 2.2711 33 1 5.6723 2.7687 1.9948 34 1 7.1314 2.1802 1.1624 35 1 5.5135 4.5556 -1.1165 36 1 6.0859 4.6329 0.5671 37 1 7.7861 5.2167 2.7283 38 1 7.3604 5.7077 -2.1795 39 1 9.1001 5.2394 -1.7847 40 1 8.6239 2.8562 -2.5133 41 1 6.8841 3.3237 -2.9079 42 1 3.7349 3.1956 -1.0584 43 1 3.7143 3.3541 0.7144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854888.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:14 Heat of formation + Delta-G solvation = 10.916185 kcal Electronic energy + Delta-G solvation = -19934.709831 eV Core-core repulsion = 17207.568888 eV Total energy + Delta-G solvation = -2727.140943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28085 -38.31952 -36.64850 -34.35596 -33.62008 -32.12878 -28.10951 -27.30980 -27.07941 -24.43428 -23.64835 -22.81646 -22.22827 -20.84607 -20.50200 -18.04068 -16.91457 -16.73041 -16.14152 -16.07814 -15.75813 -15.48970 -15.27948 -14.66627 -14.54602 -14.39594 -13.95013 -13.67663 -13.55792 -13.10024 -12.90104 -12.79165 -12.64376 -12.45651 -12.27882 -12.13723 -11.99433 -11.88326 -11.49136 -11.36468 -11.20580 -10.93293 -10.76231 -10.42219 -9.89164 -9.34566 -8.89188 -8.12648 -6.04600 1.33339 1.41209 1.49089 2.37691 2.91769 3.12224 3.46021 3.78937 3.93368 4.01955 4.11283 4.31006 4.39061 4.48725 4.56238 4.57927 4.61901 4.67960 4.73324 4.73503 4.78097 4.84915 4.89538 5.00962 5.04285 5.05303 5.05525 5.19902 5.24561 5.28506 5.31957 5.42150 5.56798 5.59595 5.63291 5.65416 5.93177 6.05388 6.48358 6.49708 6.50945 6.62907 6.88966 7.43107 8.87879 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.023708 B = 0.006806 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.740809 B = 4113.256789 C = 4850.990765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.700 5.700 3 C 0.074 3.926 4 C -0.069 4.069 5 H 0.077 0.923 6 C -0.093 4.093 7 C -0.119 4.119 8 C 0.044 3.956 9 N -0.522 5.522 10 C 0.097 3.903 11 C 0.037 3.963 12 C -0.504 4.504 13 H 0.048 0.952 14 C 0.056 3.944 15 N -0.889 5.889 16 Si 0.907 3.093 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.272 1.272 20 C -0.206 4.206 21 C -0.177 4.177 22 C 0.060 3.940 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.025 0.975 26 H 0.347 0.653 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.058 0.942 33 H -0.011 1.011 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.189 -7.849 -2.744 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.332 5.332 3 C -0.056 4.056 4 C -0.088 4.088 5 H 0.095 0.905 6 C -0.131 4.131 7 C -0.157 4.157 8 C -0.083 4.083 9 N -0.246 5.246 10 C -0.031 4.031 11 C 0.036 3.964 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.147 4.147 15 N -0.525 5.525 16 Si 0.732 3.268 17 H -0.186 1.186 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.244 4.244 21 C -0.215 4.215 22 C -0.069 4.069 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.044 0.956 26 H 0.165 0.835 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.007 0.993 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -12.131 -8.147 -2.262 14.786 hybrid contribution 0.282 0.912 0.605 1.130 sum -11.849 -7.235 -1.657 13.981 Atomic orbital electron populations 1.22213 0.86932 1.02565 1.00386 1.60343 1.08503 1.13785 1.50521 1.21842 0.93443 0.89980 1.00331 1.21044 0.94013 0.95015 0.98727 0.90513 1.21414 0.93797 1.01460 0.96396 1.21666 0.96883 0.95935 1.01177 1.22553 1.03429 0.94121 0.88231 1.61757 1.05684 1.23709 1.33451 1.21464 0.93351 0.88774 0.99462 1.18932 0.92837 0.97306 0.87357 1.20562 1.12722 1.28678 0.92119 0.93389 1.25317 0.94806 0.94800 0.99733 1.70068 1.43741 1.19341 1.19378 0.86358 0.78725 0.80912 0.80796 1.18625 1.21031 1.19726 1.22942 1.00028 0.91957 1.09517 1.22704 1.01310 0.96759 1.00684 1.22124 0.88372 0.96861 0.99549 0.90242 0.92160 0.95641 0.83450 0.91827 0.94629 0.89989 0.93987 0.91382 0.92307 0.99283 0.88217 0.94029 0.93396 0.92887 0.90872 0.91639 0.91121 0.89795 0.91041 0.97173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 127.69 1.37 1.82 16 2 N -0.70 -13.97 6.36 -537.16 -3.42 -17.38 16 3 C 0.07 1.69 5.08 86.30 0.44 2.13 16 4 C -0.07 -1.94 2.49 -10.74 -0.03 -1.96 16 5 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 6 C -0.09 -2.79 5.14 30.67 0.16 -2.63 16 7 C -0.12 -4.22 6.09 30.64 0.19 -4.03 16 8 C 0.04 1.94 4.33 86.33 0.37 2.31 16 9 N -0.52 -21.96 4.58 -896.41 -4.10 -26.06 16 10 C 0.10 4.56 4.75 86.30 0.41 4.97 16 11 C 0.04 1.80 1.91 -52.93 -0.10 1.70 16 12 C -0.50 -27.15 7.23 25.60 0.19 -26.96 16 13 H 0.05 2.65 7.92 -2.91 -0.02 2.63 16 14 C 0.06 2.95 3.33 84.66 0.28 3.23 16 15 N -0.89 -49.08 11.33 21.45 0.24 -48.84 16 16 Si 0.91 41.86 28.04 68.60 1.92 43.78 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 C -0.21 -9.46 9.91 30.62 0.30 -9.16 16 21 C -0.18 -7.73 9.96 30.62 0.30 -7.42 16 22 C 0.06 2.05 4.70 86.33 0.41 2.46 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.03 0.37 8.14 -2.39 -0.02 0.36 16 26 H 0.35 6.18 8.81 -89.69 -0.79 5.39 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 2.20 7.83 -2.39 -0.02 2.18 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H -0.01 -0.54 8.14 -2.38 -0.02 -0.55 16 34 H 0.10 4.90 2.48 -2.39 -0.01 4.89 16 35 H 0.04 1.82 7.70 -2.39 -0.02 1.80 16 36 H 0.05 2.56 5.69 -2.39 -0.01 2.55 16 37 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 38 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.06 3.09 8.14 -2.39 -0.02 3.08 16 40 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 41 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 42 H 0.07 2.28 7.92 -2.39 -0.02 2.26 16 43 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -56.59 326.07 -0.90 -57.49 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.17 Total: 24.54 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 4.29 Total: -33.53 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -7.28 Total: -92.28 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.92 Total: 43.78 kcal Total: -56.59 -0.90 -57.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854888.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.406 kcal (2) G-P(sol) polarization free energy of solvation -56.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds