Wall clock time and date at job start Mon Mar 30 2020 04:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00250 * 2 1 4 4 C 1.52991 * 109.47428 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.50627 * 304.92101 * 4 3 2 6 6 C 1.53120 * 109.50393 * 65.00059 * 4 3 2 7 7 C 1.53125 * 109.15813 * 177.63639 * 6 4 3 8 8 C 1.53036 * 109.31055 * 302.32374 * 7 6 4 9 9 N 1.46931 * 109.48080 * 59.16292 * 8 7 6 10 10 C 1.46893 * 110.98536 * 174.17745 * 9 8 7 11 11 C 1.52998 * 109.47725 * 308.64741 * 10 9 8 12 12 C 1.50699 * 115.54979 * 282.90830 * 11 10 9 13 13 H 1.08005 * 120.00087 * 145.87545 * 12 11 10 14 14 C 1.37876 * 120.00131 * 325.88076 * 12 11 10 15 15 N 1.31512 * 119.99901 * 343.00197 * 14 12 11 16 16 Si 1.86802 * 120.00365 * 162.99760 * 14 12 11 17 17 H 1.48501 * 109.46611 * 94.99086 * 16 14 12 18 18 H 1.48495 * 109.47158 * 214.99139 * 16 14 12 19 19 H 1.48506 * 109.46858 * 334.99584 * 16 14 12 20 20 C 1.52995 * 117.50292 * 137.19489 * 11 10 9 21 21 C 1.52998 * 60.00399 * 252.51393 * 20 11 10 22 22 C 1.46846 * 111.21587 * 298.28356 * 9 8 7 23 23 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46616 * 299.99427 * 1 2 3 25 25 H 1.08999 * 109.47362 * 59.99868 * 1 2 3 26 26 H 1.00900 * 111.00038 * 123.95773 * 2 1 3 27 27 H 1.09007 * 109.46987 * 59.99558 * 3 2 1 28 28 H 1.09005 * 109.46992 * 300.00434 * 3 2 1 29 29 H 1.08998 * 109.52401 * 57.73180 * 6 4 3 30 30 H 1.09002 * 109.52046 * 297.53684 * 6 4 3 31 31 H 1.08999 * 109.50466 * 62.28956 * 7 6 4 32 32 H 1.09001 * 109.49721 * 182.36174 * 7 6 4 33 33 H 1.09003 * 109.46221 * 179.22064 * 8 7 6 34 34 H 1.09003 * 109.46278 * 299.18410 * 8 7 6 35 35 H 1.09002 * 109.47211 * 68.64996 * 10 9 8 36 36 H 1.08997 * 109.46904 * 188.64260 * 10 9 8 37 37 H 0.97003 * 120.00278 * 185.01757 * 15 14 12 38 38 H 1.09005 * 117.49816 * 0.02562 * 20 11 10 39 39 H 1.08993 * 117.50136 * 145.02055 * 20 11 10 40 40 H 1.08994 * 117.49749 * 252.50867 * 21 20 11 41 41 H 1.08999 * 117.49479 * 107.48506 * 21 20 11 42 42 H 1.09000 * 109.46615 * 301.72508 * 22 9 8 43 43 H 1.09004 * 109.45219 * 181.75330 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8734 0.7327 0.8416 6 6 4.0191 0.7074 -1.3091 7 6 5.5501 0.7244 -1.3269 8 6 6.0422 2.1647 -1.1677 9 7 5.5427 2.7159 0.0994 10 6 6.1073 4.0482 0.3524 11 6 7.6299 3.9918 0.2137 12 6 8.3665 3.3817 1.3783 13 1 9.2657 2.8082 1.2080 14 6 7.8924 3.5556 2.6613 15 7 7.0177 4.5040 2.9162 16 14 8.4925 2.4440 4.0375 17 1 9.6219 3.0986 4.7454 18 1 7.3839 2.1987 4.9945 19 1 8.9487 1.1514 3.4663 20 6 8.3143 5.1382 -0.5333 21 6 8.2037 3.7586 -1.1854 22 6 4.0749 2.7535 0.1206 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8306 -0.5262 0.7813 27 1 1.6459 1.8948 0.8900 28 1 1.6459 1.8947 -0.8900 29 1 3.6386 1.2826 -2.1531 30 1 3.6654 -0.3213 -1.3790 31 1 5.9304 0.1170 -0.5056 32 1 5.9074 0.3202 -2.2741 33 1 7.1321 2.1781 -1.1662 34 1 5.6729 2.7684 -1.9968 35 1 5.7027 4.7574 -0.3698 36 1 5.8459 4.3680 1.3611 37 1 6.7390 4.6741 3.8296 38 1 7.6798 5.9331 -0.9256 39 1 9.2974 5.4517 -0.1823 40 1 9.1141 3.1644 -1.2635 41 1 7.4963 3.6456 -2.0070 42 1 3.7148 3.3544 -0.7145 43 1 3.7366 3.1950 1.0581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:17 Heat of formation + Delta-G solvation = 33.419600 kcal Electronic energy + Delta-G solvation = -19795.228310 eV Core-core repulsion = 17069.063189 eV Total energy + Delta-G solvation = -2726.165121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.96128 -36.93188 -35.30736 -32.18308 -32.12097 -30.88355 -26.42367 -26.15852 -25.17306 -23.48175 -22.30427 -21.43678 -20.63912 -19.15526 -18.87062 -16.19229 -15.78304 -14.86346 -14.75013 -14.66785 -14.38678 -14.02022 -13.65176 -13.41867 -13.25013 -12.87780 -12.61650 -12.14030 -11.86626 -11.72468 -11.60120 -11.30700 -10.98822 -10.88073 -10.65296 -10.49290 -10.36384 -10.18689 -10.07084 -9.85621 -9.71710 -9.09848 -9.06029 -8.47878 -8.41648 -7.92020 -7.20207 -5.96716 -3.95543 3.32838 3.41191 3.47633 4.18230 4.44939 4.71922 5.02900 5.17040 5.20488 5.28698 5.37731 5.41056 5.60387 5.67097 5.73416 5.75144 5.89441 5.90977 5.94844 6.14535 6.18622 6.23166 6.31535 6.43748 6.44995 6.54987 6.59842 6.66824 6.68694 6.75247 6.86520 6.95161 6.97079 6.99765 7.25702 7.30840 7.38645 7.71042 8.09282 8.21393 8.26330 8.57108 8.96822 9.61768 11.04496 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.006623 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.597277 B = 4226.691740 C = 4900.017551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.063 3.937 4 C -0.081 4.081 5 H 0.076 0.924 6 C -0.101 4.101 7 C -0.120 4.120 8 C 0.040 3.960 9 N -0.514 5.514 10 C 0.081 3.919 11 C 0.065 3.935 12 C -0.475 4.475 13 H 0.057 0.943 14 C 0.080 3.920 15 N -0.878 5.878 16 Si 0.891 3.109 17 H -0.285 1.285 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.208 4.208 21 C -0.220 4.220 22 C 0.066 3.934 23 H 0.064 0.936 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.341 0.659 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.011 0.989 35 H -0.012 1.012 36 H 0.135 0.865 37 H 0.260 0.740 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.017 0.983 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.593 -6.011 -5.466 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.066 4.066 4 C -0.100 4.100 5 H 0.095 0.905 6 C -0.139 4.139 7 C -0.157 4.157 8 C -0.088 4.088 9 N -0.237 5.237 10 C -0.046 4.046 11 C 0.065 3.935 12 C -0.512 4.512 13 H 0.075 0.925 14 C -0.122 4.122 15 N -0.516 5.516 16 Si 0.719 3.281 17 H -0.212 1.212 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.247 4.247 21 C -0.257 4.257 22 C -0.064 4.064 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.006 0.994 36 H 0.152 0.848 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.035 0.965 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.558 -6.350 -5.615 12.775 hybrid contribution -0.199 0.416 0.868 0.983 sum -9.757 -5.935 -4.747 12.368 Atomic orbital electron populations 1.22171 0.88314 1.01494 1.00198 1.60388 1.07193 1.14750 1.50004 1.22025 0.95396 0.88966 1.00223 1.21165 0.92416 0.97274 0.99162 0.90546 1.21478 0.95523 1.00642 0.96238 1.21656 0.95307 0.97869 1.00910 1.22708 1.02785 0.93528 0.89770 1.61824 1.04186 1.25722 1.31995 1.22141 0.93649 0.85149 1.03626 1.18953 0.91013 0.95026 0.88555 1.20398 1.09139 1.31905 0.89735 0.92455 1.24826 0.94422 0.94511 0.98489 1.69672 1.32958 1.29478 1.19526 0.86600 0.78035 0.81780 0.81677 1.21154 1.21113 1.19707 1.23069 1.02400 0.91055 1.08129 1.23126 1.02740 1.00615 0.99266 1.21952 0.89852 0.94745 0.99810 0.91698 0.96258 0.91949 0.84126 0.95255 0.91364 0.93319 0.91621 0.91383 0.92737 0.87658 0.97124 0.99359 0.84780 0.92929 0.92080 0.90531 0.90652 0.90967 0.96468 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.70 60.06 0.64 0.91 16 2 N -0.69 -8.03 6.36 -121.13 -0.77 -8.80 16 3 C 0.06 0.82 5.08 -3.83 -0.02 0.80 16 4 C -0.08 -1.23 2.49 -90.54 -0.23 -1.46 16 5 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 6 C -0.10 -1.50 5.14 -26.60 -0.14 -1.64 16 7 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 8 C 0.04 0.76 3.96 -3.79 -0.01 0.75 16 9 N -0.51 -10.92 4.77 -234.60 -1.12 -12.03 16 10 C 0.08 1.93 4.86 -3.83 -0.02 1.91 16 11 C 0.07 1.62 1.57 -155.66 -0.24 1.37 16 12 C -0.47 -12.92 9.02 -34.44 -0.31 -13.23 16 13 H 0.06 1.57 7.87 -52.48 -0.41 1.16 16 14 C 0.08 2.15 5.16 -17.82 -0.09 2.06 16 15 N -0.88 -24.21 10.74 55.43 0.60 -23.61 16 16 Si 0.89 21.20 29.57 -169.99 -5.03 16.17 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.21 -4.82 9.88 -26.73 -0.26 -5.09 16 21 C -0.22 -4.80 7.24 -26.73 -0.19 -4.99 16 22 C 0.07 1.19 4.75 -3.83 -0.02 1.17 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.34 3.73 8.82 -39.29 -0.35 3.38 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.92 7.83 -51.93 -0.41 0.52 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 2.19 4.31 -51.93 -0.22 1.97 16 34 H 0.01 0.20 7.69 -51.93 -0.40 -0.20 16 35 H -0.01 -0.28 7.97 -51.93 -0.41 -0.69 16 36 H 0.14 3.57 5.15 -51.93 -0.27 3.30 16 37 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.06 1.35 8.11 -51.93 -0.42 0.92 16 39 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.46 6.08 -51.93 -0.32 1.15 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -27.39 326.68 -10.29 -37.68 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.84 Total: 5.22 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -1.06 Total: -19.55 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -1.29 Total: -44.45 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.39 -10.29 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.099 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds