Wall clock time and date at job start Mon Mar 30 2020 04:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46896 * 111.00250 * 2 1 4 4 C 1.52991 * 109.47428 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.50627 * 304.92101 * 4 3 2 6 6 C 1.53120 * 109.50393 * 65.00059 * 4 3 2 7 7 C 1.53125 * 109.15813 * 177.63639 * 6 4 3 8 8 C 1.53036 * 109.31055 * 302.32374 * 7 6 4 9 9 N 1.46931 * 109.48080 * 59.16292 * 8 7 6 10 10 C 1.46893 * 110.98536 * 174.17745 * 9 8 7 11 11 C 1.52998 * 109.47725 * 308.64741 * 10 9 8 12 12 C 1.50699 * 115.54979 * 282.90830 * 11 10 9 13 13 H 1.08005 * 120.00087 * 145.87545 * 12 11 10 14 14 C 1.37876 * 120.00131 * 325.88076 * 12 11 10 15 15 N 1.31512 * 119.99901 * 343.00197 * 14 12 11 16 16 Si 1.86802 * 120.00365 * 162.99760 * 14 12 11 17 17 H 1.48501 * 109.46611 * 94.99086 * 16 14 12 18 18 H 1.48495 * 109.47158 * 214.99139 * 16 14 12 19 19 H 1.48506 * 109.46858 * 334.99584 * 16 14 12 20 20 C 1.52995 * 117.50292 * 137.19489 * 11 10 9 21 21 C 1.52998 * 60.00399 * 252.51393 * 20 11 10 22 22 C 1.46846 * 111.21587 * 298.28356 * 9 8 7 23 23 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46616 * 299.99427 * 1 2 3 25 25 H 1.08999 * 109.47362 * 59.99868 * 1 2 3 26 26 H 1.00900 * 111.00038 * 123.95773 * 2 1 3 27 27 H 1.09007 * 109.46987 * 59.99558 * 3 2 1 28 28 H 1.09005 * 109.46992 * 300.00434 * 3 2 1 29 29 H 1.08998 * 109.52401 * 57.73180 * 6 4 3 30 30 H 1.09002 * 109.52046 * 297.53684 * 6 4 3 31 31 H 1.08999 * 109.50466 * 62.28956 * 7 6 4 32 32 H 1.09001 * 109.49721 * 182.36174 * 7 6 4 33 33 H 1.09003 * 109.46221 * 179.22064 * 8 7 6 34 34 H 1.09003 * 109.46278 * 299.18410 * 8 7 6 35 35 H 1.09002 * 109.47211 * 68.64996 * 10 9 8 36 36 H 1.08997 * 109.46904 * 188.64260 * 10 9 8 37 37 H 0.97003 * 120.00278 * 185.01757 * 15 14 12 38 38 H 1.09005 * 117.49816 * 0.02562 * 20 11 10 39 39 H 1.08993 * 117.50136 * 145.02055 * 20 11 10 40 40 H 1.08994 * 117.49749 * 252.50867 * 21 20 11 41 41 H 1.08999 * 117.49479 * 107.48506 * 21 20 11 42 42 H 1.09000 * 109.46615 * 301.72508 * 22 9 8 43 43 H 1.09004 * 109.45219 * 181.75330 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8734 0.7327 0.8416 6 6 4.0191 0.7074 -1.3091 7 6 5.5501 0.7244 -1.3269 8 6 6.0422 2.1647 -1.1677 9 7 5.5427 2.7159 0.0994 10 6 6.1073 4.0482 0.3524 11 6 7.6299 3.9918 0.2137 12 6 8.3665 3.3817 1.3783 13 1 9.2657 2.8082 1.2080 14 6 7.8924 3.5556 2.6613 15 7 7.0177 4.5040 2.9162 16 14 8.4925 2.4440 4.0375 17 1 9.6219 3.0986 4.7454 18 1 7.3839 2.1987 4.9945 19 1 8.9487 1.1514 3.4663 20 6 8.3143 5.1382 -0.5333 21 6 8.2037 3.7586 -1.1854 22 6 4.0749 2.7535 0.1206 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8306 -0.5262 0.7813 27 1 1.6459 1.8948 0.8900 28 1 1.6459 1.8947 -0.8900 29 1 3.6386 1.2826 -2.1531 30 1 3.6654 -0.3213 -1.3790 31 1 5.9304 0.1170 -0.5056 32 1 5.9074 0.3202 -2.2741 33 1 7.1321 2.1781 -1.1662 34 1 5.6729 2.7684 -1.9968 35 1 5.7027 4.7574 -0.3698 36 1 5.8459 4.3680 1.3611 37 1 6.7390 4.6741 3.8296 38 1 7.6798 5.9331 -0.9256 39 1 9.2974 5.4517 -0.1823 40 1 9.1141 3.1644 -1.2635 41 1 7.4963 3.6456 -2.0070 42 1 3.7148 3.3544 -0.7145 43 1 3.7366 3.1950 1.0581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:17 Heat of formation + Delta-G solvation = 16.540624 kcal Electronic energy + Delta-G solvation = -19795.960237 eV Core-core repulsion = 17069.063189 eV Total energy + Delta-G solvation = -2726.897049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47337 -38.42777 -36.55589 -34.19760 -33.58002 -32.17896 -28.03593 -27.43482 -27.06778 -24.57625 -23.76142 -23.03121 -22.08979 -20.84210 -20.47014 -18.09507 -16.87889 -16.66701 -16.16620 -16.03173 -15.72759 -15.57054 -15.12690 -14.95754 -14.46328 -14.32704 -14.00790 -13.53148 -13.44322 -13.13322 -12.86839 -12.78460 -12.75090 -12.47519 -12.29520 -12.19432 -11.96923 -11.80079 -11.49927 -11.43200 -11.14526 -11.03062 -10.90524 -10.19903 -9.87645 -9.37792 -8.85134 -8.00762 -6.05852 1.42087 1.47042 1.56901 2.46641 2.95158 3.15940 3.44671 3.74136 3.92039 4.03352 4.09518 4.27969 4.33903 4.46019 4.54126 4.55530 4.58812 4.59597 4.70958 4.73132 4.73736 4.80197 4.89173 4.90075 4.95267 5.03661 5.04056 5.13054 5.15240 5.26882 5.29360 5.42352 5.51611 5.57468 5.59798 5.67146 6.03283 6.17031 6.40638 6.44237 6.58747 6.67510 6.90763 7.53102 8.98731 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.006623 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.597277 B = 4226.691740 C = 4900.017551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.698 5.698 3 C 0.073 3.927 4 C -0.073 4.073 5 H 0.063 0.937 6 C -0.092 4.092 7 C -0.115 4.115 8 C 0.041 3.959 9 N -0.531 5.531 10 C 0.091 3.909 11 C 0.035 3.965 12 C -0.494 4.494 13 H 0.046 0.954 14 C 0.040 3.960 15 N -0.899 5.899 16 Si 0.945 3.055 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.212 4.212 21 C -0.191 4.191 22 C 0.067 3.933 23 H 0.079 0.921 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.345 0.655 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.015 0.985 35 H -0.015 1.015 36 H 0.106 0.894 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.022 0.978 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 -7.390 -6.387 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.329 5.329 3 C -0.056 4.056 4 C -0.092 4.092 5 H 0.081 0.919 6 C -0.129 4.129 7 C -0.153 4.153 8 C -0.086 4.086 9 N -0.255 5.255 10 C -0.036 4.036 11 C 0.035 3.965 12 C -0.531 4.531 13 H 0.064 0.936 14 C -0.160 4.160 15 N -0.537 5.537 16 Si 0.772 3.228 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.251 4.251 21 C -0.228 4.228 22 C -0.062 4.062 23 H 0.098 0.902 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.162 0.838 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.033 0.967 35 H 0.003 0.997 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.496 -7.735 -6.543 14.588 hybrid contribution 0.094 0.862 1.137 1.430 sum -10.402 -6.873 -5.407 13.590 Atomic orbital electron populations 1.22227 0.86895 1.02605 1.00416 1.60384 1.08526 1.13660 1.50289 1.21852 0.93515 0.89990 1.00291 1.21063 0.94050 0.94953 0.99118 0.91856 1.21408 0.94224 1.01437 0.95865 1.21627 0.96450 0.95564 1.01610 1.22663 1.01748 0.95318 0.88865 1.61763 1.05969 1.24229 1.33504 1.21824 0.93354 0.86600 1.01846 1.19036 0.91492 0.96499 0.89503 1.20602 1.09249 1.32219 0.91052 0.93558 1.25419 0.94815 0.95404 1.00329 1.69802 1.33741 1.30366 1.19828 0.85752 0.77661 0.80098 0.79312 1.20572 1.20918 1.19736 1.23070 1.01958 0.91812 1.08220 1.23072 1.02628 0.99043 0.98023 1.21987 0.88156 0.96824 0.99249 0.90182 0.96013 0.91724 0.83750 0.95531 0.91019 0.92755 0.90227 0.92647 0.90436 0.89422 0.96705 0.99687 0.87625 0.92945 0.91175 0.91291 0.90318 0.89122 0.95999 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.70 127.69 1.37 1.83 16 2 N -0.70 -14.53 6.36 -537.15 -3.42 -17.94 16 3 C 0.07 1.76 5.08 86.30 0.44 2.20 16 4 C -0.07 -2.11 2.49 -10.74 -0.03 -2.14 16 5 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 6 C -0.09 -2.49 5.14 30.68 0.16 -2.33 16 7 C -0.11 -3.52 6.09 30.65 0.19 -3.33 16 8 C 0.04 1.54 3.96 86.31 0.34 1.89 16 9 N -0.53 -22.50 4.77 -896.14 -4.27 -26.77 16 10 C 0.09 4.40 4.86 86.30 0.42 4.82 16 11 C 0.04 1.77 1.57 -52.93 -0.08 1.68 16 12 C -0.49 -27.22 9.02 25.60 0.23 -26.99 16 13 H 0.05 2.57 7.87 -2.91 -0.02 2.55 16 14 C 0.04 2.21 5.16 84.65 0.44 2.64 16 15 N -0.90 -50.43 10.74 21.45 0.23 -50.19 16 16 Si 0.95 43.84 29.57 68.60 2.03 45.87 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 C -0.21 -9.79 9.88 30.59 0.30 -9.49 16 21 C -0.19 -8.13 7.24 30.60 0.22 -7.91 16 22 C 0.07 2.38 4.75 86.33 0.41 2.79 16 23 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.34 6.81 8.82 -89.69 -0.79 6.02 16 27 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.98 7.83 -2.39 -0.02 1.97 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 3.56 4.31 -2.39 -0.01 3.55 16 34 H 0.01 0.54 7.69 -2.39 -0.02 0.52 16 35 H -0.01 -0.71 7.97 -2.39 -0.02 -0.73 16 36 H 0.11 5.78 5.15 -2.39 -0.01 5.77 16 37 H 0.26 13.96 8.32 -92.71 -0.77 13.18 16 38 H 0.07 3.06 8.11 -2.38 -0.02 3.04 16 39 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.09 3.51 6.08 -2.39 -0.01 3.50 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.05 2.02 8.12 -2.38 -0.02 2.00 16 Total: -1.00 -57.97 326.68 -0.86 -58.83 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.17 Total: 24.55 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 4.40 Total: -34.34 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -7.46 Total: -94.91 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -57.97 -0.86 -58.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.370 kcal (2) G-P(sol) polarization free energy of solvation -57.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds