Wall clock time and date at job start Mon Mar 30 2020 04:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 C 1.53007 * 109.46729 * 179.97438 * 3 2 1 5 5 C 1.53111 * 109.52462 * 294.68330 * 4 3 2 6 6 C 1.53045 * 109.27636 * 182.44285 * 5 4 3 7 7 N 1.46842 * 109.52359 * 59.18158 * 6 5 4 8 8 C 1.46899 * 110.99974 * 174.16000 * 7 6 5 9 9 C 1.53000 * 109.47354 * 306.58333 * 8 7 6 10 10 C 1.50694 * 115.54761 * 305.98383 * 9 8 7 11 11 H 1.08003 * 120.00081 * 144.27739 * 10 9 8 12 12 C 1.37879 * 120.00190 * 324.27590 * 10 9 8 13 13 N 1.31514 * 120.00044 * 351.51475 * 12 10 9 14 14 Si 1.86798 * 120.00024 * 171.50952 * 12 10 9 15 15 H 1.48500 * 109.47462 * 5.00289 * 14 12 10 16 16 H 1.48509 * 109.47298 * 125.00268 * 14 12 10 17 17 H 1.48496 * 109.47477 * 245.00384 * 14 12 10 18 18 C 1.52997 * 117.50074 * 160.30921 * 9 8 7 19 19 C 1.52999 * 117.49549 * 91.65021 * 9 8 7 20 20 C 1.46852 * 111.19650 * 298.25931 * 7 6 5 21 21 C 1.53030 * 109.52559 * 61.74385 * 20 7 6 22 22 H 1.09011 * 109.47089 * 59.99906 * 1 2 3 23 23 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47468 * 300.00094 * 1 2 3 25 25 H 1.00900 * 111.00664 * 236.04532 * 2 1 3 26 26 H 1.08995 * 109.47289 * 60.00262 * 3 2 1 27 27 H 1.08993 * 109.47163 * 299.99534 * 3 2 1 28 28 H 1.08997 * 109.57239 * 54.85007 * 4 3 2 29 29 H 1.09004 * 109.50690 * 302.38331 * 5 4 3 30 30 H 1.08998 * 109.50468 * 62.50349 * 5 4 3 31 31 H 1.08998 * 109.46459 * 299.16439 * 6 5 4 32 32 H 1.09002 * 109.46039 * 179.19585 * 6 5 4 33 33 H 1.09005 * 109.47225 * 66.59086 * 8 7 6 34 34 H 1.09010 * 109.46979 * 186.58063 * 8 7 6 35 35 H 0.97005 * 119.99762 * 185.00679 * 13 12 10 36 36 H 1.09010 * 117.49661 * 0.02562 * 18 9 8 37 37 H 1.08996 * 117.49679 * 145.01781 * 18 9 8 38 38 H 1.09007 * 117.49533 * 214.98129 * 19 9 8 39 39 H 1.08998 * 117.49957 * 359.97438 * 19 9 8 40 40 H 1.09004 * 109.45966 * 301.72002 * 20 7 6 41 41 H 1.09002 * 109.45991 * 181.75981 * 20 7 6 42 42 H 1.08998 * 109.50195 * 180.88033 * 21 20 7 43 43 H 1.08995 * 109.50845 * 60.76184 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3305 0.0006 5 6 4.0198 0.7146 1.3122 6 6 5.5500 0.7322 1.3329 7 7 6.0265 2.1158 1.2106 8 6 7.4856 2.1856 1.3655 9 6 7.8930 1.5031 2.6729 10 6 7.1973 2.0045 3.9120 11 1 6.9455 1.3166 4.7057 12 6 6.8821 3.3413 4.0326 13 7 7.3328 4.2054 3.1495 14 14 5.8150 3.9252 5.4502 15 1 5.5401 2.7875 6.3642 16 1 6.5234 4.9977 6.1940 17 1 4.5331 4.4546 4.9195 18 6 9.3495 1.0559 2.8124 19 6 8.2447 0.0153 2.6131 20 6 5.6033 2.7125 -0.0627 21 6 4.0748 2.7541 -0.1251 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8306 -0.5261 -0.7813 26 1 1.6460 1.8948 0.8900 27 1 1.6460 1.8947 -0.8900 28 1 3.8745 0.7296 -0.8388 29 1 3.6378 1.2935 2.1531 30 1 3.6667 -0.3138 1.3873 31 1 5.9313 0.1418 0.4998 32 1 5.9054 0.3074 2.2717 33 1 7.9647 1.6801 0.5270 34 1 7.7991 3.2295 1.3875 35 1 7.1725 5.1540 3.2736 36 1 10.0177 1.2484 1.9729 37 1 9.8044 1.1241 3.8005 38 1 7.9733 -0.6008 3.4705 39 1 8.1855 -0.4773 1.6426 40 1 5.9845 2.1128 -0.8893 41 1 5.9975 3.7260 -0.1376 42 1 3.7610 3.1827 -1.0769 43 1 3.6936 3.3650 0.6931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:49 Heat of formation + Delta-G solvation = 25.107129 kcal Electronic energy + Delta-G solvation = -19908.717140 eV Core-core repulsion = 17182.191563 eV Total energy + Delta-G solvation = -2726.525577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.74439 -36.83436 -35.34893 -32.32135 -31.90325 -30.08536 -27.62329 -25.50601 -24.73625 -23.16412 -22.39677 -21.02731 -20.90469 -19.09257 -18.75972 -16.18136 -15.75928 -14.86343 -14.67362 -14.52897 -14.25738 -14.04692 -13.57160 -13.42728 -13.12526 -12.73187 -12.36811 -11.93307 -11.88632 -11.70999 -11.50496 -11.19647 -11.00795 -10.85568 -10.55640 -10.45664 -10.34402 -10.18435 -9.98691 -9.69764 -9.65836 -9.14881 -8.85358 -8.50695 -8.42265 -7.90258 -7.00346 -5.80645 -3.84667 3.39197 3.47930 3.51167 4.23733 4.54155 4.88093 5.04897 5.18409 5.27191 5.31044 5.37610 5.43270 5.71493 5.72744 5.77402 5.85931 5.86903 6.00018 6.04865 6.19454 6.23211 6.31976 6.44616 6.47384 6.56502 6.60067 6.68369 6.73067 6.77973 6.84377 6.96487 6.98326 7.04120 7.09545 7.31956 7.33377 7.42913 7.73522 8.14149 8.34758 8.40152 8.65696 9.09216 9.75677 11.20495 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.007010 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.072017 B = 3993.474913 C = 4517.561897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.692 5.692 3 C 0.064 3.936 4 C -0.084 4.084 5 C -0.098 4.098 6 C 0.058 3.942 7 N -0.496 5.496 8 C 0.105 3.895 9 C 0.066 3.934 10 C -0.477 4.477 11 H 0.054 0.946 12 C 0.091 3.909 13 N -0.872 5.872 14 Si 0.888 3.112 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.283 1.283 18 C -0.208 4.208 19 C -0.219 4.219 20 C 0.062 3.938 21 C -0.107 4.107 22 H 0.016 0.984 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.338 0.662 26 H 0.073 0.927 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.004 0.996 32 H 0.092 0.908 33 H -0.020 1.020 34 H 0.116 0.884 35 H 0.256 0.744 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.011 0.989 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 -4.449 -8.066 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.322 5.322 3 C -0.065 4.065 4 C -0.103 4.103 5 C -0.136 4.136 6 C -0.070 4.070 7 N -0.220 5.220 8 C -0.022 4.022 9 C 0.065 3.935 10 C -0.514 4.514 11 H 0.072 0.928 12 C -0.112 4.112 13 N -0.509 5.509 14 Si 0.717 3.283 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.209 1.209 18 C -0.246 4.246 19 C -0.256 4.256 20 C -0.067 4.067 21 C -0.145 4.145 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.155 0.845 26 H 0.091 0.909 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.022 0.978 32 H 0.110 0.890 33 H -0.002 1.002 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.932 -4.038 -7.077 12.090 hybrid contribution -0.323 0.073 -0.906 0.965 sum -9.255 -3.965 -7.983 12.849 Atomic orbital electron populations 1.22172 0.88296 1.01495 1.00162 1.60365 1.07185 1.14869 1.49776 1.22085 0.95459 0.88794 1.00134 1.21205 0.92969 0.96995 0.99094 1.21509 0.95565 1.00297 0.96237 1.22143 0.94081 0.89959 1.00863 1.61670 1.13524 1.16865 1.29917 1.21763 0.84685 1.03410 0.92356 1.18975 0.91290 0.88159 0.95082 1.20295 1.37263 0.93191 1.00679 0.92817 1.24716 0.94585 0.96649 0.95263 1.69783 1.45183 1.01470 1.34427 0.86622 0.80978 0.78380 0.82314 1.20096 1.21655 1.20906 1.22987 0.94549 1.07119 0.99962 1.22976 1.08024 0.95143 0.99506 1.21931 0.94383 0.99555 0.90816 1.21563 0.96118 0.96012 1.00834 0.96498 0.91710 0.91772 0.84478 0.90893 0.95858 0.92373 0.91527 0.91781 0.97771 0.88973 1.00219 0.86663 0.93414 0.92097 0.90517 0.90857 0.91970 0.97103 0.91298 0.92976 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 60.06 0.64 0.92 16 2 N -0.69 -8.24 6.37 -121.13 -0.77 -9.01 16 3 C 0.06 0.83 5.08 -3.82 -0.02 0.81 16 4 C -0.08 -1.24 2.40 -90.49 -0.22 -1.46 16 5 C -0.10 -1.70 5.24 -26.65 -0.14 -1.84 16 6 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 7 N -0.50 -10.82 4.34 -234.66 -1.02 -11.83 16 8 C 0.10 2.49 4.17 -3.82 -0.02 2.47 16 9 C 0.07 1.62 1.08 -155.67 -0.17 1.45 16 10 C -0.48 -12.90 8.31 -34.44 -0.29 -13.18 16 11 H 0.05 1.48 7.83 -52.48 -0.41 1.07 16 12 C 0.09 2.47 5.19 -17.82 -0.09 2.37 16 13 N -0.87 -23.87 10.69 55.43 0.59 -23.28 16 14 Si 0.89 21.46 29.55 -169.99 -5.02 16.43 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.21 -4.80 9.96 -26.70 -0.27 -5.06 16 19 C -0.22 -4.84 8.16 -26.70 -0.22 -5.06 16 20 C 0.06 1.16 5.46 -3.83 -0.02 1.14 16 21 C -0.11 -1.70 5.38 -26.65 -0.14 -1.85 16 22 H 0.02 0.15 8.14 -51.92 -0.42 -0.27 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.34 3.61 8.82 -39.29 -0.35 3.27 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 31 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 2.05 5.36 -51.93 -0.28 1.77 16 33 H -0.02 -0.46 8.09 -51.93 -0.42 -0.88 16 34 H 0.12 3.02 5.99 -51.92 -0.31 2.71 16 35 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 37 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.07 1.60 8.14 -51.92 -0.42 1.17 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 41 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 330.69 15.07 4.98 4.98 Total: -1.00 -27.31 330.69 -10.27 -37.58 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.07 Total: 3.27 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.96 Total: -18.15 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -1.20 Total: -44.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.31 -10.27 -37.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.689 kcal (2) G-P(sol) polarization free energy of solvation -27.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds