Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 C 1.53007 * 109.46729 * 179.97438 * 3 2 1 5 5 C 1.53111 * 109.52462 * 294.68330 * 4 3 2 6 6 C 1.53045 * 109.27636 * 182.44285 * 5 4 3 7 7 N 1.46842 * 109.52359 * 59.18158 * 6 5 4 8 8 C 1.46899 * 110.99974 * 174.16000 * 7 6 5 9 9 C 1.53000 * 109.47354 * 306.58333 * 8 7 6 10 10 C 1.50694 * 115.54761 * 305.98383 * 9 8 7 11 11 H 1.08003 * 120.00081 * 144.27739 * 10 9 8 12 12 C 1.37879 * 120.00190 * 324.27590 * 10 9 8 13 13 N 1.31514 * 120.00044 * 351.51475 * 12 10 9 14 14 Si 1.86798 * 120.00024 * 171.50952 * 12 10 9 15 15 H 1.48500 * 109.47462 * 5.00289 * 14 12 10 16 16 H 1.48509 * 109.47298 * 125.00268 * 14 12 10 17 17 H 1.48496 * 109.47477 * 245.00384 * 14 12 10 18 18 C 1.52997 * 117.50074 * 160.30921 * 9 8 7 19 19 C 1.52999 * 117.49549 * 91.65021 * 9 8 7 20 20 C 1.46852 * 111.19650 * 298.25931 * 7 6 5 21 21 C 1.53030 * 109.52559 * 61.74385 * 20 7 6 22 22 H 1.09011 * 109.47089 * 59.99906 * 1 2 3 23 23 H 1.08997 * 109.47255 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47468 * 300.00094 * 1 2 3 25 25 H 1.00900 * 111.00664 * 236.04532 * 2 1 3 26 26 H 1.08995 * 109.47289 * 60.00262 * 3 2 1 27 27 H 1.08993 * 109.47163 * 299.99534 * 3 2 1 28 28 H 1.08997 * 109.57239 * 54.85007 * 4 3 2 29 29 H 1.09004 * 109.50690 * 302.38331 * 5 4 3 30 30 H 1.08998 * 109.50468 * 62.50349 * 5 4 3 31 31 H 1.08998 * 109.46459 * 299.16439 * 6 5 4 32 32 H 1.09002 * 109.46039 * 179.19585 * 6 5 4 33 33 H 1.09005 * 109.47225 * 66.59086 * 8 7 6 34 34 H 1.09010 * 109.46979 * 186.58063 * 8 7 6 35 35 H 0.97005 * 119.99762 * 185.00679 * 13 12 10 36 36 H 1.09010 * 117.49661 * 0.02562 * 18 9 8 37 37 H 1.08996 * 117.49679 * 145.01781 * 18 9 8 38 38 H 1.09007 * 117.49533 * 214.98129 * 19 9 8 39 39 H 1.08998 * 117.49957 * 359.97438 * 19 9 8 40 40 H 1.09004 * 109.45966 * 301.72002 * 20 7 6 41 41 H 1.09002 * 109.45991 * 181.75981 * 20 7 6 42 42 H 1.08998 * 109.50195 * 180.88033 * 21 20 7 43 43 H 1.08995 * 109.50845 * 60.76184 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5249 1.3305 0.0006 5 6 4.0198 0.7146 1.3122 6 6 5.5500 0.7322 1.3329 7 7 6.0265 2.1158 1.2106 8 6 7.4856 2.1856 1.3655 9 6 7.8930 1.5031 2.6729 10 6 7.1973 2.0045 3.9120 11 1 6.9455 1.3166 4.7057 12 6 6.8821 3.3413 4.0326 13 7 7.3328 4.2054 3.1495 14 14 5.8150 3.9252 5.4502 15 1 5.5401 2.7875 6.3642 16 1 6.5234 4.9977 6.1940 17 1 4.5331 4.4546 4.9195 18 6 9.3495 1.0559 2.8124 19 6 8.2447 0.0153 2.6131 20 6 5.6033 2.7125 -0.0627 21 6 4.0748 2.7541 -0.1251 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8306 -0.5261 -0.7813 26 1 1.6460 1.8948 0.8900 27 1 1.6460 1.8947 -0.8900 28 1 3.8745 0.7296 -0.8388 29 1 3.6378 1.2935 2.1531 30 1 3.6667 -0.3138 1.3873 31 1 5.9313 0.1418 0.4998 32 1 5.9054 0.3074 2.2717 33 1 7.9647 1.6801 0.5270 34 1 7.7991 3.2295 1.3875 35 1 7.1725 5.1540 3.2736 36 1 10.0177 1.2484 1.9729 37 1 9.8044 1.1241 3.8005 38 1 7.9733 -0.6008 3.4705 39 1 8.1855 -0.4773 1.6426 40 1 5.9845 2.1128 -0.8893 41 1 5.9975 3.7260 -0.1376 42 1 3.7610 3.1827 -1.0769 43 1 3.6936 3.3650 0.6931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = 8.711106 kcal Electronic energy + Delta-G solvation = -19909.428125 eV Core-core repulsion = 17182.191563 eV Total energy + Delta-G solvation = -2727.236562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24861 -38.37083 -36.64206 -34.01242 -33.63408 -31.54659 -28.92829 -27.45773 -26.14926 -24.41809 -23.86608 -22.76449 -22.25778 -20.70773 -20.47742 -18.05546 -16.91928 -16.56543 -16.21689 -15.77162 -15.68887 -15.47026 -15.25068 -14.99675 -14.37902 -14.22492 -13.80868 -13.40628 -13.33426 -12.99337 -12.92889 -12.80908 -12.67176 -12.51821 -12.24994 -12.21811 -12.00665 -11.87787 -11.50158 -11.24833 -11.12144 -10.95306 -10.82349 -10.35440 -9.86672 -9.31886 -8.67054 -7.85565 -5.95366 1.43944 1.49346 1.56361 2.52879 3.13569 3.32819 3.44207 3.77542 3.91005 4.01174 4.10929 4.35061 4.44999 4.49275 4.54345 4.55677 4.58913 4.69820 4.71388 4.74103 4.79833 4.84428 4.91382 4.96671 5.00244 5.05087 5.12928 5.17306 5.19113 5.22130 5.33275 5.44792 5.53814 5.59014 5.63390 5.73419 6.08125 6.12580 6.48056 6.51897 6.72899 6.80218 7.03876 7.66020 9.12767 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019923 B = 0.007010 C = 0.006197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.072017 B = 3993.474913 C = 4517.561897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.705 5.705 3 C 0.073 3.927 4 C -0.075 4.075 5 C -0.089 4.089 6 C 0.063 3.937 7 N -0.517 5.517 8 C 0.116 3.884 9 C 0.038 3.962 10 C -0.490 4.490 11 H 0.039 0.961 12 C 0.056 3.944 13 N -0.887 5.887 14 Si 0.937 3.063 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.209 4.209 19 C -0.195 4.195 20 C 0.061 3.939 21 C -0.100 4.100 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.347 0.653 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.012 0.988 32 H 0.066 0.934 33 H -0.016 1.016 34 H 0.087 0.913 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.022 0.978 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -5.261 -9.309 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.336 5.336 3 C -0.056 4.056 4 C -0.094 4.094 5 C -0.127 4.127 6 C -0.065 4.065 7 N -0.241 5.241 8 C -0.011 4.011 9 C 0.038 3.962 10 C -0.527 4.527 11 H 0.057 0.943 12 C -0.146 4.146 13 N -0.525 5.525 14 Si 0.764 3.236 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.247 4.247 19 C -0.232 4.232 20 C -0.068 4.068 21 C -0.138 4.138 22 H 0.046 0.954 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.165 0.835 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.030 0.970 32 H 0.084 0.916 33 H 0.002 0.998 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.194 -4.860 -8.322 14.028 hybrid contribution 0.095 0.291 -0.517 0.601 sum -10.099 -4.569 -8.839 14.177 Atomic orbital electron populations 1.22198 0.87017 1.02473 1.00339 1.60322 1.08498 1.14228 1.50532 1.21897 0.93788 0.89656 1.00246 1.21110 0.94418 0.96016 0.97811 1.21399 0.93562 1.00766 0.96940 1.22052 0.95754 0.88986 0.99697 1.61596 1.12335 1.18101 1.32037 1.21472 0.86186 1.01467 0.91988 1.19053 0.92164 0.90215 0.94805 1.20417 1.37792 0.93216 1.01302 0.94316 1.25216 0.95453 0.96807 0.97095 1.69906 1.45850 1.01415 1.35330 0.85866 0.79559 0.77856 0.80269 1.20155 1.21177 1.21096 1.22991 0.94215 1.07386 1.00116 1.22907 1.06083 0.93847 1.00349 1.21986 0.96328 0.98672 0.89774 1.21513 0.93908 0.96756 1.01658 0.95432 0.90385 0.92426 0.83513 0.92276 0.94235 0.91050 0.94037 0.90694 0.97011 0.91578 0.99812 0.89487 0.93570 0.90866 0.91219 0.90788 0.90284 0.95972 0.92631 0.89995 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.70 127.69 1.37 1.87 16 2 N -0.70 -14.91 6.37 -537.15 -3.42 -18.33 16 3 C 0.07 1.72 5.08 86.31 0.44 2.15 16 4 C -0.07 -2.04 2.40 -10.71 -0.03 -2.07 16 5 C -0.09 -2.99 5.24 30.65 0.16 -2.83 16 6 C 0.06 2.49 4.80 86.33 0.41 2.90 16 7 N -0.52 -22.48 4.34 -896.34 -3.89 -26.37 16 8 C 0.12 5.55 4.17 86.30 0.36 5.91 16 9 C 0.04 1.89 1.08 -52.93 -0.06 1.84 16 10 C -0.49 -26.85 8.31 25.60 0.21 -26.64 16 11 H 0.04 2.18 7.83 -2.91 -0.02 2.15 16 12 C 0.06 3.05 5.19 84.66 0.44 3.49 16 13 N -0.89 -49.33 10.69 21.45 0.23 -49.10 16 14 Si 0.94 44.51 29.55 68.60 2.03 46.53 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 18 C -0.21 -9.55 9.96 30.62 0.30 -9.24 16 19 C -0.19 -8.42 8.16 30.62 0.25 -8.17 16 20 C 0.06 2.21 5.46 86.32 0.47 2.69 16 21 C -0.10 -3.01 5.38 30.65 0.16 -2.85 16 22 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 23 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.35 6.32 8.82 -89.69 -0.79 5.52 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.07 2.34 7.84 -2.39 -0.02 2.32 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 2.94 5.36 -2.39 -0.01 2.92 16 33 H -0.02 -0.73 8.09 -2.38 -0.02 -0.75 16 34 H 0.09 4.65 5.99 -2.38 -0.01 4.64 16 35 H 0.25 13.68 8.32 -92.70 -0.77 12.91 16 36 H 0.07 3.13 8.14 -2.38 -0.02 3.11 16 37 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 39 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.06 2.14 8.12 -2.39 -0.02 2.12 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -58.00 330.69 -0.40 -58.39 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.16 Total: 19.83 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 4.50 Total: -30.95 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -7.09 Total: -93.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -58.00 -0.40 -58.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.104 kcal (2) G-P(sol) polarization free energy of solvation -57.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds