Wall clock time and date at job start Mon Mar 30 2020 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 110.99978 * 2 1 4 4 C 1.53006 * 109.47155 * 182.73605 * 3 2 1 5 5 H 1.08998 * 109.45088 * 187.30741 * 4 3 2 6 6 C 1.53039 * 109.45991 * 67.33505 * 4 3 2 7 7 C 1.53117 * 109.27557 * 180.80168 * 6 4 3 8 8 C 1.53118 * 109.15964 * 57.65531 * 7 6 4 9 9 C 1.53034 * 109.28155 * 302.34274 * 8 7 6 10 10 N 1.46843 * 109.46240 * 307.28169 * 4 3 2 11 11 C 1.46903 * 111.00099 * 305.85322 * 10 4 3 12 12 C 1.52997 * 109.47026 * 285.04706 * 11 10 4 13 13 C 1.50698 * 115.55278 * 280.57557 * 12 11 10 14 14 H 1.07990 * 120.00345 * 144.09231 * 13 12 11 15 15 C 1.37879 * 119.99944 * 324.09329 * 13 12 11 16 16 N 1.31523 * 119.99685 * 341.91188 * 15 13 12 17 17 Si 1.86792 * 120.00241 * 161.91054 * 15 13 12 18 18 H 1.48509 * 109.47326 * 94.98840 * 17 15 13 19 19 H 1.48501 * 109.47481 * 214.98597 * 17 15 13 20 20 H 1.48500 * 109.47258 * 334.99130 * 17 15 13 21 21 C 1.53003 * 117.49817 * 134.86991 * 12 11 10 22 22 C 1.53001 * 60.00041 * 252.51114 * 21 12 11 23 23 H 1.09002 * 109.47084 * 299.99219 * 1 2 3 24 24 H 1.08993 * 109.47663 * 59.99380 * 1 2 3 25 25 H 1.09004 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.00906 * 110.99858 * 236.05098 * 2 1 3 27 27 H 1.09003 * 109.46635 * 62.74251 * 3 2 1 28 28 H 1.08993 * 109.47324 * 302.73713 * 3 2 1 29 29 H 1.09003 * 109.50043 * 60.86142 * 6 4 3 30 30 H 1.09001 * 109.53424 * 300.76729 * 6 4 3 31 31 H 1.09003 * 109.51898 * 177.55898 * 7 6 4 32 32 H 1.08992 * 109.52683 * 297.75005 * 7 6 4 33 33 H 1.09004 * 109.50248 * 62.28670 * 8 7 6 34 34 H 1.09003 * 109.50453 * 182.39820 * 8 7 6 35 35 H 1.09001 * 109.46321 * 299.16943 * 9 8 7 36 36 H 1.08994 * 109.45983 * 179.18713 * 9 8 7 37 37 H 1.09000 * 109.47172 * 45.04730 * 11 10 4 38 38 H 1.08996 * 109.47099 * 165.04503 * 11 10 4 39 39 H 0.97008 * 119.99361 * 185.02049 * 16 15 13 40 40 H 1.09000 * 117.49776 * 359.97438 * 21 12 11 41 41 H 1.08995 * 117.50421 * 145.01847 * 21 12 11 42 42 H 1.09004 * 117.49242 * 252.51453 * 22 21 12 43 43 H 1.08999 * 117.50006 * 107.49039 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5234 1.3312 -0.0689 5 1 3.9192 2.3383 0.0616 6 6 3.9582 0.7848 -1.4307 7 6 5.4872 0.7276 -1.4876 8 6 6.0005 -0.1453 -0.3390 9 6 5.5065 0.4280 0.9911 10 7 4.0384 0.4613 0.9961 11 6 3.5257 0.8761 2.3088 12 6 4.2524 2.1436 2.7628 13 6 5.6260 1.9321 3.3453 14 1 6.4069 2.6556 3.1635 15 6 5.8859 0.8149 4.1104 16 7 4.8918 0.1278 4.6296 17 14 7.6495 0.2771 4.4093 18 1 8.1255 0.8361 5.7002 19 1 7.7134 -1.2057 4.4586 20 1 8.5120 0.7734 3.3070 21 6 3.4029 3.2739 3.3476 22 6 4.0170 3.4209 1.9540 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8305 -0.5261 -0.7815 27 1 1.6861 1.8792 0.9136 28 1 1.6068 1.9098 -0.8644 29 1 3.5888 1.4394 -2.2201 30 1 3.5510 -0.2169 -1.5683 31 1 5.8004 0.2985 -2.4393 32 1 5.8933 1.7343 -1.3896 33 1 5.6256 -1.1618 -0.4589 34 1 7.0904 -0.1554 -0.3486 35 1 5.8931 1.4394 1.1166 36 1 5.8583 -0.1995 1.8100 37 1 2.4569 1.0768 2.2346 38 1 3.6964 0.0801 3.0336 39 1 5.0751 -0.6143 5.2269 40 1 2.3264 3.1145 3.4086 41 1 3.8375 3.8646 4.1540 42 1 4.8557 4.1084 1.8436 43 1 3.3445 3.3582 1.0985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:54 Heat of formation + Delta-G solvation = 39.444136 kcal Electronic energy + Delta-G solvation = -20795.890232 eV Core-core repulsion = 18069.986354 eV Total energy + Delta-G solvation = -2725.903878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.26520 -36.10998 -35.15856 -32.29868 -31.93744 -30.60318 -26.57305 -25.71367 -25.29230 -23.52578 -22.02098 -21.22937 -20.57926 -19.11611 -18.33849 -16.17089 -15.68407 -14.99771 -14.70674 -14.38305 -14.30475 -13.76898 -13.56350 -13.24846 -12.92917 -12.65726 -12.42999 -11.88699 -11.69887 -11.55175 -11.37186 -11.20499 -10.94951 -10.89237 -10.65442 -10.43363 -10.21329 -10.06851 -9.93853 -9.71567 -9.46792 -9.33231 -8.81642 -8.69637 -7.95690 -7.91665 -6.89203 -6.02796 -3.97954 3.26145 3.36538 3.40066 4.37954 4.61680 4.92397 5.09986 5.26442 5.30717 5.43046 5.58778 5.60341 5.64928 5.79352 5.87161 5.92313 6.04224 6.08474 6.14115 6.22733 6.29076 6.40650 6.47891 6.50768 6.56462 6.62042 6.67820 6.72111 6.78725 6.93343 7.04203 7.12787 7.32238 7.38950 7.40917 7.51164 7.74995 7.78950 8.14009 8.36657 8.42085 8.62294 8.92138 9.53654 10.97909 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.009214 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.014176 B = 3038.188876 C = 3546.808642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.668 5.668 3 C 0.067 3.933 4 C 0.066 3.934 5 H 0.059 0.941 6 C -0.111 4.111 7 C -0.115 4.115 8 C -0.123 4.123 9 C 0.066 3.934 10 N -0.502 5.502 11 C 0.083 3.917 12 C 0.032 3.968 13 C -0.488 4.488 14 H 0.056 0.944 15 C 0.078 3.922 16 N -0.865 5.865 17 Si 0.876 3.124 18 H -0.283 1.283 19 H -0.282 1.282 20 H -0.270 1.270 21 C -0.204 4.204 22 C -0.223 4.223 23 H 0.060 0.940 24 H 0.009 0.991 25 H 0.062 0.938 26 H 0.338 0.662 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.125 0.875 39 H 0.263 0.737 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -0.226 -10.318 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.299 5.299 3 C -0.063 4.063 4 C -0.043 4.043 5 H 0.077 0.923 6 C -0.149 4.149 7 C -0.152 4.152 8 C -0.161 4.161 9 C -0.062 4.062 10 N -0.226 5.226 11 C -0.044 4.044 12 C 0.030 3.970 13 C -0.525 4.525 14 H 0.074 0.926 15 C -0.126 4.126 16 N -0.502 5.502 17 Si 0.703 3.297 18 H -0.209 1.209 19 H -0.208 1.208 20 H -0.195 1.195 21 C -0.243 4.243 22 C -0.260 4.260 23 H 0.079 0.921 24 H 0.028 0.972 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.092 0.908 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.900 -1.008 -9.660 10.466 hybrid contribution 0.955 1.084 -0.484 1.524 sum -2.944 0.075 -10.143 10.562 Atomic orbital electron populations 1.22187 0.89214 1.01164 0.99573 1.60220 1.05708 1.13954 1.50036 1.22082 0.95068 0.89537 0.99593 1.21933 0.92964 0.96813 0.92578 0.92335 1.21615 0.96033 1.00825 0.96385 1.21504 0.95672 0.99995 0.98067 1.21727 0.99012 0.99347 0.95979 1.22118 0.88252 1.01021 0.94821 1.62330 1.07686 1.49009 1.03527 1.22078 0.94893 0.98435 0.89025 1.19800 0.95282 0.86631 0.95321 1.20417 0.94070 1.06122 1.31940 0.92615 1.24862 0.96484 0.96173 0.95047 1.69817 1.30381 1.21199 1.28773 0.86827 0.85931 0.78348 0.78578 1.20928 1.20750 1.19511 1.22898 0.97224 1.09290 0.94843 1.23106 1.02843 1.06134 0.93940 0.92095 0.97217 0.91943 0.84316 0.90821 0.96409 0.93236 0.91798 0.93156 0.92655 0.92227 0.92877 0.92735 0.90708 0.93706 0.85800 0.92701 0.92093 0.90930 0.91356 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.70 60.06 0.64 1.01 16 2 N -0.67 -10.32 6.51 -121.13 -0.79 -11.11 16 3 C 0.07 1.08 4.24 -3.82 -0.02 1.06 16 4 C 0.07 1.16 1.57 -67.72 -0.11 1.05 16 5 H 0.06 1.11 4.71 -51.93 -0.24 0.87 16 6 C -0.11 -1.64 5.19 -26.65 -0.14 -1.78 16 7 C -0.11 -1.73 6.00 -26.61 -0.16 -1.89 16 8 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 9 C 0.07 1.38 3.99 -3.83 -0.02 1.36 16 10 N -0.50 -10.21 4.37 -226.69 -0.99 -11.20 16 11 C 0.08 1.91 5.12 -3.82 -0.02 1.89 16 12 C 0.03 0.76 1.11 -155.66 -0.17 0.58 16 13 C -0.49 -12.80 6.41 -34.44 -0.22 -13.02 16 14 H 0.06 1.50 7.88 -52.49 -0.41 1.09 16 15 C 0.08 2.04 3.80 -17.82 -0.07 1.97 16 16 N -0.87 -23.50 10.91 55.43 0.60 -22.89 16 17 Si 0.88 20.46 29.27 -169.99 -4.98 15.48 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.20 -4.70 9.88 -26.73 -0.26 -4.96 16 22 C -0.22 -4.81 8.44 -26.73 -0.23 -5.04 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.34 4.88 7.09 -39.29 -0.28 4.60 16 27 H 0.07 1.33 6.06 -51.93 -0.31 1.01 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.93 6.66 -51.93 -0.35 0.59 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 1.25 6.03 -51.93 -0.31 0.94 16 36 H 0.07 1.77 6.37 -51.93 -0.33 1.44 16 37 H 0.04 1.02 5.38 -51.93 -0.28 0.75 16 38 H 0.12 3.31 5.27 -51.93 -0.27 3.03 16 39 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 40 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 41 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.46 4.98 -51.93 -0.26 1.20 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -26.22 311.32 -9.64 -35.86 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.26 Total: 9.20 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.93 Total: -20.02 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -1.17 Total: -45.21 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.98 Total: 15.48 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.22 -9.64 -35.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.304 kcal (2) G-P(sol) polarization free energy of solvation -26.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds