Wall clock time and date at job start Mon Mar 30 2020 04:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46898 * 110.99978 * 2 1 4 4 C 1.53006 * 109.47155 * 182.73605 * 3 2 1 5 5 H 1.08998 * 109.45088 * 187.30741 * 4 3 2 6 6 C 1.53039 * 109.45991 * 67.33505 * 4 3 2 7 7 C 1.53117 * 109.27557 * 180.80168 * 6 4 3 8 8 C 1.53118 * 109.15964 * 57.65531 * 7 6 4 9 9 C 1.53034 * 109.28155 * 302.34274 * 8 7 6 10 10 N 1.46843 * 109.46240 * 307.28169 * 4 3 2 11 11 C 1.46903 * 111.00099 * 305.85322 * 10 4 3 12 12 C 1.52997 * 109.47026 * 285.04706 * 11 10 4 13 13 C 1.50698 * 115.55278 * 280.57557 * 12 11 10 14 14 H 1.07990 * 120.00345 * 144.09231 * 13 12 11 15 15 C 1.37879 * 119.99944 * 324.09329 * 13 12 11 16 16 N 1.31523 * 119.99685 * 341.91188 * 15 13 12 17 17 Si 1.86792 * 120.00241 * 161.91054 * 15 13 12 18 18 H 1.48509 * 109.47326 * 94.98840 * 17 15 13 19 19 H 1.48501 * 109.47481 * 214.98597 * 17 15 13 20 20 H 1.48500 * 109.47258 * 334.99130 * 17 15 13 21 21 C 1.53003 * 117.49817 * 134.86991 * 12 11 10 22 22 C 1.53001 * 60.00041 * 252.51114 * 21 12 11 23 23 H 1.09002 * 109.47084 * 299.99219 * 1 2 3 24 24 H 1.08993 * 109.47663 * 59.99380 * 1 2 3 25 25 H 1.09004 * 109.47104 * 179.97438 * 1 2 3 26 26 H 1.00906 * 110.99858 * 236.05098 * 2 1 3 27 27 H 1.09003 * 109.46635 * 62.74251 * 3 2 1 28 28 H 1.08993 * 109.47324 * 302.73713 * 3 2 1 29 29 H 1.09003 * 109.50043 * 60.86142 * 6 4 3 30 30 H 1.09001 * 109.53424 * 300.76729 * 6 4 3 31 31 H 1.09003 * 109.51898 * 177.55898 * 7 6 4 32 32 H 1.08992 * 109.52683 * 297.75005 * 7 6 4 33 33 H 1.09004 * 109.50248 * 62.28670 * 8 7 6 34 34 H 1.09003 * 109.50453 * 182.39820 * 8 7 6 35 35 H 1.09001 * 109.46321 * 299.16943 * 9 8 7 36 36 H 1.08994 * 109.45983 * 179.18713 * 9 8 7 37 37 H 1.09000 * 109.47172 * 45.04730 * 11 10 4 38 38 H 1.08996 * 109.47099 * 165.04503 * 11 10 4 39 39 H 0.97008 * 119.99361 * 185.02049 * 16 15 13 40 40 H 1.09000 * 117.49776 * 359.97438 * 21 12 11 41 41 H 1.08995 * 117.50421 * 145.01847 * 21 12 11 42 42 H 1.09004 * 117.49242 * 252.51453 * 22 21 12 43 43 H 1.08999 * 117.50006 * 107.49039 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5234 1.3312 -0.0689 5 1 3.9192 2.3383 0.0616 6 6 3.9582 0.7848 -1.4307 7 6 5.4872 0.7276 -1.4876 8 6 6.0005 -0.1453 -0.3390 9 6 5.5065 0.4280 0.9911 10 7 4.0384 0.4613 0.9961 11 6 3.5257 0.8761 2.3088 12 6 4.2524 2.1436 2.7628 13 6 5.6260 1.9321 3.3453 14 1 6.4069 2.6556 3.1635 15 6 5.8859 0.8149 4.1104 16 7 4.8918 0.1278 4.6296 17 14 7.6495 0.2771 4.4093 18 1 8.1255 0.8361 5.7002 19 1 7.7134 -1.2057 4.4586 20 1 8.5120 0.7734 3.3070 21 6 3.4029 3.2739 3.3476 22 6 4.0170 3.4209 1.9540 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8305 -0.5261 -0.7815 27 1 1.6861 1.8792 0.9136 28 1 1.6068 1.9098 -0.8644 29 1 3.5888 1.4394 -2.2201 30 1 3.5510 -0.2169 -1.5683 31 1 5.8004 0.2985 -2.4393 32 1 5.8933 1.7343 -1.3896 33 1 5.6256 -1.1618 -0.4589 34 1 7.0904 -0.1554 -0.3486 35 1 5.8931 1.4394 1.1166 36 1 5.8583 -0.1995 1.8100 37 1 2.4569 1.0768 2.2346 38 1 3.6964 0.0801 3.0336 39 1 5.0751 -0.6143 5.2269 40 1 2.3264 3.1145 3.4086 41 1 3.8375 3.8646 4.1540 42 1 4.8557 4.1084 1.8436 43 1 3.3445 3.3582 1.0985 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:53 Heat of formation + Delta-G solvation = 22.945960 kcal Electronic energy + Delta-G solvation = -20796.605647 eV Core-core repulsion = 18069.986354 eV Total energy + Delta-G solvation = -2726.619293 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81902 -37.75827 -36.42795 -34.27774 -33.45426 -31.98087 -28.00181 -27.62219 -26.84976 -24.74166 -23.54252 -23.03888 -21.95826 -20.89696 -19.87601 -18.05766 -17.04568 -16.72650 -16.23285 -15.89296 -15.80620 -15.23516 -14.98418 -14.90746 -14.25753 -14.09802 -13.87637 -13.49033 -13.31333 -12.92976 -12.84086 -12.75986 -12.68084 -12.42590 -12.34513 -12.12389 -11.92030 -11.68411 -11.49117 -11.29548 -11.04534 -10.92848 -10.63607 -10.59325 -9.84412 -9.09196 -8.56350 -8.04881 -6.04451 1.36202 1.42849 1.50641 2.41783 2.99947 3.35788 3.60052 3.73169 4.00379 4.05771 4.19046 4.33707 4.41515 4.51632 4.55035 4.63689 4.65605 4.72320 4.76866 4.84383 4.88008 4.94372 4.97633 5.01996 5.09193 5.13478 5.16938 5.22880 5.24788 5.34395 5.41283 5.52098 5.53047 5.63832 5.69397 5.79037 6.20539 6.26006 6.45292 6.66443 6.69919 6.87475 6.94950 7.48603 8.94712 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.009214 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.014176 B = 3038.188876 C = 3546.808642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.687 5.687 3 C 0.074 3.926 4 C 0.065 3.935 5 H 0.044 0.956 6 C -0.104 4.104 7 C -0.111 4.111 8 C -0.118 4.118 9 C 0.073 3.927 10 N -0.500 5.500 11 C 0.098 3.902 12 C 0.011 3.989 13 C -0.499 4.499 14 H 0.041 0.959 15 C 0.045 3.955 16 N -0.889 5.889 17 Si 0.925 3.075 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.211 4.211 22 C -0.196 4.196 23 H 0.049 0.951 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.345 0.655 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -0.314 -12.766 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.319 5.319 3 C -0.056 4.056 4 C -0.044 4.044 5 H 0.062 0.938 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.156 4.156 9 C -0.056 4.056 10 N -0.223 5.223 11 C -0.030 4.030 12 C 0.009 3.991 13 C -0.536 4.536 14 H 0.059 0.941 15 C -0.156 4.156 16 N -0.526 5.526 17 Si 0.751 3.249 18 H -0.209 1.209 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.249 4.249 22 C -0.233 4.233 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.165 0.835 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.212 -1.090 -12.121 12.878 hybrid contribution 1.025 1.129 0.283 1.551 sum -3.187 0.039 -11.838 12.260 Atomic orbital electron populations 1.22184 0.87702 1.02084 0.99869 1.60159 1.07320 1.13633 1.50822 1.21930 0.94011 0.90189 0.99421 1.22024 0.93881 0.95554 0.92972 0.93819 1.21596 0.95892 1.01671 0.95075 1.21491 0.95739 0.99359 0.98244 1.21671 0.99516 0.99735 0.94667 1.21927 0.88611 0.99041 0.95976 1.62290 1.07224 1.49779 1.03019 1.21708 0.94749 0.96685 0.89878 1.19846 0.94678 0.87799 0.96747 1.20528 0.94859 1.06126 1.32116 0.94106 1.25341 0.99184 0.96127 0.94938 1.69938 1.31768 1.21529 1.29370 0.86057 0.82586 0.77918 0.78338 1.20854 1.20554 1.19140 1.22885 0.97615 1.08858 0.95571 1.23057 1.02476 1.03993 0.93759 0.93161 0.95409 0.90775 0.83509 0.93152 0.94055 0.90576 0.91077 0.90198 0.93123 0.91881 0.92142 0.95204 0.94294 0.93731 0.89434 0.92864 0.91156 0.92179 0.91648 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.70 127.69 1.37 2.10 16 2 N -0.69 -19.78 6.51 -537.16 -3.50 -23.28 16 3 C 0.07 2.23 4.24 86.31 0.37 2.59 16 4 C 0.06 2.13 1.57 44.94 0.07 2.20 16 5 H 0.04 1.59 4.71 -2.39 -0.01 1.58 16 6 C -0.10 -2.73 5.19 30.65 0.16 -2.57 16 7 C -0.11 -2.97 6.00 30.67 0.18 -2.79 16 8 C -0.12 -3.86 6.09 30.65 0.19 -3.67 16 9 C 0.07 3.06 3.99 86.32 0.34 3.41 16 10 N -0.50 -20.16 4.37 -871.11 -3.80 -23.97 16 11 C 0.10 4.60 5.12 86.30 0.44 5.04 16 12 C 0.01 0.54 1.11 -52.93 -0.06 0.48 16 13 C -0.50 -26.84 6.41 25.60 0.16 -26.68 16 14 H 0.04 2.26 7.88 -2.92 -0.02 2.24 16 15 C 0.05 2.44 3.80 84.65 0.32 2.76 16 16 N -0.89 -49.72 10.91 21.45 0.23 -49.48 16 17 Si 0.92 42.85 29.27 68.60 2.01 44.85 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 21 C -0.21 -9.78 9.88 30.60 0.30 -9.48 16 22 C -0.20 -8.37 8.44 30.60 0.26 -8.11 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.35 8.98 7.09 -89.69 -0.64 8.35 16 27 H 0.05 1.75 6.06 -2.39 -0.01 1.74 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.79 6.66 -2.39 -0.02 1.78 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.39 6.03 -2.39 -0.01 1.37 16 36 H 0.04 1.88 6.37 -2.39 -0.02 1.87 16 37 H 0.04 2.06 5.38 -2.39 -0.01 2.05 16 38 H 0.09 4.83 5.27 -2.39 -0.01 4.82 16 39 H 0.26 14.06 8.32 -92.70 -0.77 13.29 16 40 H 0.07 3.09 8.09 -2.39 -0.02 3.07 16 41 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.10 3.65 4.98 -2.39 -0.01 3.64 16 Total: -1.00 -57.31 311.32 -0.60 -57.91 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.35 Total: 28.67 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 4.11 Total: -34.71 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -7.07 Total: -96.72 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.01 Total: 44.85 kcal Total: -57.31 -0.60 -57.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.856 kcal (2) G-P(sol) polarization free energy of solvation -57.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds