Wall clock time and date at job start Mon Mar 30 2020 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00337 * 2 1 4 4 C 1.52998 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.45999 * 42.11404 * 4 3 2 6 6 C 1.53043 * 109.46296 * 162.08639 * 4 3 2 7 7 C 1.53202 * 109.29652 * 179.19031 * 6 4 3 8 8 C 1.53110 * 109.12055 * 302.37092 * 7 6 4 9 9 C 1.53039 * 109.31338 * 57.63600 * 8 7 6 10 10 N 1.46850 * 109.52354 * 300.80298 * 9 8 7 11 11 C 1.46894 * 111.00099 * 185.83186 * 10 9 8 12 12 C 1.53004 * 109.46974 * 70.53900 * 11 10 9 13 13 C 1.50709 * 115.54942 * 290.99690 * 12 11 10 14 14 H 1.07999 * 119.99318 * 143.61414 * 13 12 11 15 15 C 1.37874 * 119.99782 * 323.61958 * 13 12 11 16 16 N 1.31506 * 119.99972 * 341.52060 * 15 13 12 17 17 Si 1.86801 * 119.99672 * 161.52606 * 15 13 12 18 18 H 1.48498 * 109.47439 * 59.99840 * 17 15 13 19 19 H 1.48503 * 109.46892 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47099 * 299.99372 * 17 15 13 21 21 C 1.52996 * 117.50314 * 145.32496 * 12 11 10 22 22 C 1.53003 * 117.49951 * 76.66407 * 12 11 10 23 23 H 1.08998 * 109.47491 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47211 * 300.00620 * 1 2 3 25 25 H 1.09001 * 109.46990 * 60.00251 * 1 2 3 26 26 H 1.00900 * 111.00084 * 236.03708 * 2 1 3 27 27 H 1.08992 * 109.47353 * 59.99305 * 3 2 1 28 28 H 1.09005 * 109.46724 * 299.99706 * 3 2 1 29 29 H 1.08998 * 109.50311 * 299.13667 * 6 4 3 30 30 H 1.09006 * 109.50307 * 59.21528 * 6 4 3 31 31 H 1.09007 * 109.57315 * 182.45572 * 7 6 4 32 32 H 1.08998 * 109.51557 * 62.24762 * 7 6 4 33 33 H 1.09007 * 109.50575 * 297.67781 * 8 7 6 34 34 H 1.09000 * 109.50410 * 177.59864 * 8 7 6 35 35 H 1.09002 * 109.45809 * 60.81903 * 9 8 7 36 36 H 1.08998 * 109.46623 * 180.78467 * 9 8 7 37 37 H 1.08995 * 109.47200 * 190.53380 * 11 10 9 38 38 H 1.09002 * 109.47580 * 310.54471 * 11 10 9 39 39 H 0.97008 * 119.99957 * 185.05792 * 16 15 13 40 40 H 1.09006 * 117.49505 * 0.02562 * 21 12 11 41 41 H 1.08994 * 117.50344 * 145.01881 * 21 12 11 42 42 H 1.08997 * 117.50105 * 214.98528 * 22 12 11 43 43 H 1.09005 * 117.49404 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8672 0.5588 -0.6901 6 6 4.0712 2.6895 -0.4445 7 6 5.6026 2.6506 -0.4243 8 6 6.0765 2.2837 0.9846 9 6 5.4721 0.9365 1.3871 10 7 4.0067 1.0262 1.3528 11 6 3.3918 -0.2053 1.8659 12 6 3.6174 -0.2968 3.3764 13 6 5.0411 -0.5386 3.8076 14 1 5.4210 -0.0697 4.7033 15 6 5.8584 -1.3582 3.0585 16 7 5.3325 -2.2042 2.2001 17 14 7.7130 -1.2668 3.2631 18 1 8.0725 -1.5883 4.6676 19 1 8.3603 -2.2435 2.3509 20 1 8.1803 0.1037 2.9338 21 6 2.5072 -0.9272 4.2196 22 6 2.7469 0.5836 4.2754 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5262 -0.7813 27 1 1.6460 1.8948 0.8898 28 1 1.6460 1.8947 -0.8901 29 1 3.7260 2.9079 -1.4550 30 1 3.7175 3.4638 0.2363 31 1 5.9963 3.6296 -0.6978 32 1 5.9572 1.9033 -1.1341 33 1 5.7548 3.0515 1.6883 34 1 7.1641 2.2125 0.9957 35 1 5.8053 0.1666 0.6911 36 1 5.7967 0.6795 2.3953 37 1 2.3219 -0.1908 1.6586 38 1 3.8449 -1.0683 1.3780 39 1 5.9013 -2.8315 1.7268 40 1 1.6163 -1.2771 3.6981 41 1 2.8065 -1.5165 5.0863 42 1 3.2037 0.9877 5.1787 43 1 2.0138 1.2284 3.7905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:57 Heat of formation + Delta-G solvation = 40.968771 kcal Electronic energy + Delta-G solvation = -20688.962918 eV Core-core repulsion = 17963.125153 eV Total energy + Delta-G solvation = -2725.837765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.83949 -36.08264 -35.42857 -32.34520 -31.85697 -30.62355 -26.54701 -25.69253 -25.30261 -22.98708 -21.92499 -20.95215 -20.55132 -18.96823 -18.69002 -16.02574 -15.87972 -14.85106 -14.58606 -14.33526 -14.25464 -13.75667 -13.59017 -13.19944 -12.77294 -12.61262 -12.37972 -12.04414 -11.61273 -11.51413 -11.34643 -11.28525 -10.81914 -10.76104 -10.58218 -10.43792 -10.25945 -10.11645 -9.93787 -9.67219 -9.42940 -9.02502 -8.81343 -8.41179 -7.88204 -7.71790 -6.91829 -5.93538 -3.89306 3.29433 3.35274 3.39505 4.39549 4.49306 4.88117 5.13062 5.28499 5.41737 5.49283 5.53807 5.59186 5.79023 5.81841 5.88601 5.91656 6.04229 6.06144 6.20219 6.24650 6.37457 6.40671 6.54469 6.58070 6.62684 6.72906 6.78666 6.98500 7.05755 7.12438 7.20796 7.25427 7.41304 7.54140 7.59395 7.61105 7.71264 7.80681 8.21273 8.52678 8.61000 8.68393 9.02143 9.56812 11.01356 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.010574 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.510917 B = 2647.279155 C = 3561.819334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.678 5.678 3 C 0.067 3.933 4 C 0.085 3.915 5 H 0.027 0.973 6 C -0.106 4.106 7 C -0.117 4.117 8 C -0.121 4.121 9 C 0.037 3.963 10 N -0.513 5.513 11 C 0.063 3.937 12 C 0.065 3.935 13 C -0.487 4.487 14 H 0.057 0.943 15 C 0.079 3.921 16 N -0.864 5.864 17 Si 0.867 3.133 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.269 1.269 21 C -0.205 4.205 22 C -0.200 4.200 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.013 0.987 26 H 0.337 0.663 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 6.389 -6.924 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.308 5.308 3 C -0.062 4.062 4 C -0.025 4.025 5 H 0.045 0.955 6 C -0.145 4.145 7 C -0.155 4.155 8 C -0.159 4.159 9 C -0.090 4.090 10 N -0.238 5.238 11 C -0.064 4.064 12 C 0.064 3.936 13 C -0.525 4.525 14 H 0.075 0.925 15 C -0.124 4.124 16 N -0.501 5.501 17 Si 0.694 3.306 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.194 1.194 21 C -0.243 4.243 22 C -0.237 4.237 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.032 0.968 26 H 0.155 0.845 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.032 0.968 36 H 0.148 0.852 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.508 6.587 -6.145 10.074 hybrid contribution 1.106 -0.447 -1.330 1.787 sum -3.401 6.140 -7.476 10.254 Atomic orbital electron populations 1.22180 0.88597 1.01538 0.99847 1.60688 1.06879 1.14392 1.48876 1.22068 0.95031 0.89031 1.00108 1.21549 0.92802 0.95501 0.92626 0.95511 1.21563 0.95663 0.97709 0.99549 1.21565 0.95674 1.00041 0.98175 1.21696 0.98791 0.99835 0.95565 1.22810 0.87881 0.92793 1.05531 1.61921 1.06246 1.38246 1.17404 1.22367 1.00120 0.90048 0.93862 1.18935 0.89881 0.94907 0.89839 1.20485 0.94481 1.28541 1.08949 0.92485 1.24918 0.97835 0.94648 0.95011 1.69927 1.34691 1.17992 1.27450 0.87087 0.86921 0.78425 0.78188 1.20249 1.21264 1.19436 1.22889 1.02582 0.94267 1.04591 1.22688 1.05666 0.92316 1.03059 0.91683 0.91802 0.96808 0.84485 0.90086 0.95884 0.93092 0.91466 0.93048 0.93051 0.91827 0.93146 0.96789 0.85185 0.88755 0.90453 0.93000 0.92036 0.91180 0.91670 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.70 60.06 0.64 1.00 16 2 N -0.68 -10.54 3.90 -121.14 -0.47 -11.01 16 3 C 0.07 1.04 4.70 -3.83 -0.02 1.02 16 4 C 0.08 1.50 2.16 -67.72 -0.15 1.36 16 5 H 0.03 0.51 7.99 -51.93 -0.41 0.10 16 6 C -0.11 -1.63 5.30 -26.60 -0.14 -1.77 16 7 C -0.12 -1.85 6.01 -26.57 -0.16 -2.00 16 8 C -0.12 -2.24 6.09 -26.65 -0.16 -2.41 16 9 C 0.04 0.82 4.06 -3.83 -0.02 0.81 16 10 N -0.51 -10.88 4.45 -226.69 -1.01 -11.89 16 11 C 0.06 1.46 4.15 -3.82 -0.02 1.45 16 12 C 0.07 1.63 1.89 -155.65 -0.29 1.34 16 13 C -0.49 -13.14 6.84 -34.44 -0.24 -13.37 16 14 H 0.06 1.57 7.88 -52.49 -0.41 1.15 16 15 C 0.08 2.10 3.30 -17.82 -0.06 2.04 16 16 N -0.86 -23.64 11.00 55.43 0.61 -23.03 16 17 Si 0.87 20.55 28.57 -169.99 -4.86 15.70 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 21 C -0.20 -4.88 9.91 -26.70 -0.26 -5.15 16 22 C -0.20 -4.59 9.96 -26.69 -0.27 -4.86 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.34 5.00 8.70 -39.29 -0.34 4.66 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.02 0.32 8.01 -51.93 -0.42 -0.10 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.01 0.33 8.13 -51.93 -0.42 -0.09 16 36 H 0.13 3.25 3.10 -51.93 -0.16 3.09 16 37 H 0.09 2.10 4.51 -51.93 -0.23 1.87 16 38 H 0.08 2.05 5.49 -51.93 -0.29 1.77 16 39 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 42 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -27.06 320.41 -9.78 -36.84 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.74 Total: 9.11 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.13 Total: -20.55 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.87 Total: -45.93 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.06 -9.78 -36.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.811 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds