Wall clock time and date at job start Mon Mar 30 2020 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00337 * 2 1 4 4 C 1.52998 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.45999 * 42.11404 * 4 3 2 6 6 C 1.53043 * 109.46296 * 162.08639 * 4 3 2 7 7 C 1.53202 * 109.29652 * 179.19031 * 6 4 3 8 8 C 1.53110 * 109.12055 * 302.37092 * 7 6 4 9 9 C 1.53039 * 109.31338 * 57.63600 * 8 7 6 10 10 N 1.46850 * 109.52354 * 300.80298 * 9 8 7 11 11 C 1.46894 * 111.00099 * 185.83186 * 10 9 8 12 12 C 1.53004 * 109.46974 * 70.53900 * 11 10 9 13 13 C 1.50709 * 115.54942 * 290.99690 * 12 11 10 14 14 H 1.07999 * 119.99318 * 143.61414 * 13 12 11 15 15 C 1.37874 * 119.99782 * 323.61958 * 13 12 11 16 16 N 1.31506 * 119.99972 * 341.52060 * 15 13 12 17 17 Si 1.86801 * 119.99672 * 161.52606 * 15 13 12 18 18 H 1.48498 * 109.47439 * 59.99840 * 17 15 13 19 19 H 1.48503 * 109.46892 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47099 * 299.99372 * 17 15 13 21 21 C 1.52996 * 117.50314 * 145.32496 * 12 11 10 22 22 C 1.53003 * 117.49951 * 76.66407 * 12 11 10 23 23 H 1.08998 * 109.47491 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47211 * 300.00620 * 1 2 3 25 25 H 1.09001 * 109.46990 * 60.00251 * 1 2 3 26 26 H 1.00900 * 111.00084 * 236.03708 * 2 1 3 27 27 H 1.08992 * 109.47353 * 59.99305 * 3 2 1 28 28 H 1.09005 * 109.46724 * 299.99706 * 3 2 1 29 29 H 1.08998 * 109.50311 * 299.13667 * 6 4 3 30 30 H 1.09006 * 109.50307 * 59.21528 * 6 4 3 31 31 H 1.09007 * 109.57315 * 182.45572 * 7 6 4 32 32 H 1.08998 * 109.51557 * 62.24762 * 7 6 4 33 33 H 1.09007 * 109.50575 * 297.67781 * 8 7 6 34 34 H 1.09000 * 109.50410 * 177.59864 * 8 7 6 35 35 H 1.09002 * 109.45809 * 60.81903 * 9 8 7 36 36 H 1.08998 * 109.46623 * 180.78467 * 9 8 7 37 37 H 1.08995 * 109.47200 * 190.53380 * 11 10 9 38 38 H 1.09002 * 109.47580 * 310.54471 * 11 10 9 39 39 H 0.97008 * 119.99957 * 185.05792 * 16 15 13 40 40 H 1.09006 * 117.49505 * 0.02562 * 21 12 11 41 41 H 1.08994 * 117.50344 * 145.01881 * 21 12 11 42 42 H 1.08997 * 117.50105 * 214.98528 * 22 12 11 43 43 H 1.09005 * 117.49404 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 1 3.8672 0.5588 -0.6901 6 6 4.0712 2.6895 -0.4445 7 6 5.6026 2.6506 -0.4243 8 6 6.0765 2.2837 0.9846 9 6 5.4721 0.9365 1.3871 10 7 4.0067 1.0262 1.3528 11 6 3.3918 -0.2053 1.8659 12 6 3.6174 -0.2968 3.3764 13 6 5.0411 -0.5386 3.8076 14 1 5.4210 -0.0697 4.7033 15 6 5.8584 -1.3582 3.0585 16 7 5.3325 -2.2042 2.2001 17 14 7.7130 -1.2668 3.2631 18 1 8.0725 -1.5883 4.6676 19 1 8.3603 -2.2435 2.3509 20 1 8.1803 0.1037 2.9338 21 6 2.5072 -0.9272 4.2196 22 6 2.7469 0.5836 4.2754 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5262 -0.7813 27 1 1.6460 1.8948 0.8898 28 1 1.6460 1.8947 -0.8901 29 1 3.7260 2.9079 -1.4550 30 1 3.7175 3.4638 0.2363 31 1 5.9963 3.6296 -0.6978 32 1 5.9572 1.9033 -1.1341 33 1 5.7548 3.0515 1.6883 34 1 7.1641 2.2125 0.9957 35 1 5.8053 0.1666 0.6911 36 1 5.7967 0.6795 2.3953 37 1 2.3219 -0.1908 1.6586 38 1 3.8449 -1.0683 1.3780 39 1 5.9013 -2.8315 1.7268 40 1 1.6163 -1.2771 3.6981 41 1 2.8065 -1.5165 5.0863 42 1 3.2037 0.9877 5.1787 43 1 2.0138 1.2284 3.7905 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:56 Heat of formation + Delta-G solvation = 24.929779 kcal Electronic energy + Delta-G solvation = -20689.658421 eV Core-core repulsion = 17963.125153 eV Total energy + Delta-G solvation = -2726.533268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37296 -37.86892 -36.68774 -34.30562 -33.41749 -32.06120 -27.90352 -27.68984 -26.85142 -24.24256 -23.49163 -22.79430 -21.99843 -20.70084 -20.35449 -17.94662 -17.24311 -16.70160 -16.01609 -15.92914 -15.50887 -15.49295 -15.06734 -14.61229 -14.45363 -14.10617 -13.87955 -13.53769 -13.15705 -13.14043 -12.80441 -12.75058 -12.57117 -12.39385 -12.25246 -12.06968 -11.92407 -11.83811 -11.48743 -11.28111 -11.01257 -10.85060 -10.63665 -10.32175 -9.82278 -9.00123 -8.68848 -7.95759 -5.98219 1.36821 1.40613 1.45768 2.41017 3.03739 3.32808 3.43751 3.87906 4.01832 4.15181 4.19213 4.36756 4.49510 4.50265 4.55141 4.62708 4.66980 4.74491 4.79865 4.87355 4.96792 5.01162 5.06434 5.07837 5.11062 5.13420 5.21459 5.28417 5.33040 5.37814 5.52564 5.58980 5.68563 5.69785 5.76839 5.90884 6.11942 6.29408 6.47565 6.61561 6.77678 6.87279 7.05073 7.49736 8.95084 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017425 B = 0.010574 C = 0.007859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.510917 B = 2647.279155 C = 3561.819334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.702 5.702 3 C 0.076 3.924 4 C 0.081 3.919 5 H 0.010 0.990 6 C -0.101 4.101 7 C -0.113 4.113 8 C -0.119 4.119 9 C 0.042 3.958 10 N -0.515 5.515 11 C 0.079 3.921 12 C 0.038 3.962 13 C -0.503 4.503 14 H 0.042 0.958 15 C 0.053 3.947 16 N -0.884 5.884 17 Si 0.911 3.089 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.261 1.261 21 C -0.206 4.206 22 C -0.180 4.180 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.340 0.660 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.053 0.947 35 H -0.016 1.016 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.257 0.743 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.094 8.154 -8.160 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.333 5.333 3 C -0.053 4.053 4 C -0.028 4.028 5 H 0.028 0.972 6 C -0.139 4.139 7 C -0.150 4.150 8 C -0.157 4.157 9 C -0.086 4.086 10 N -0.239 5.239 11 C -0.049 4.049 12 C 0.037 3.963 13 C -0.540 4.540 14 H 0.060 0.940 15 C -0.149 4.149 16 N -0.521 5.521 17 Si 0.736 3.264 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.186 1.186 21 C -0.245 4.245 22 C -0.217 4.217 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.158 0.842 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.003 0.997 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.151 8.366 -7.379 12.287 hybrid contribution 1.279 -1.019 -0.928 1.880 sum -3.873 7.347 -8.306 11.746 Atomic orbital electron populations 1.22179 0.86841 1.02180 1.00581 1.60549 1.08696 1.14589 1.49464 1.21949 0.93249 0.89307 1.00838 1.21722 0.94487 0.96470 0.90150 0.97182 1.21562 0.95118 0.95942 1.01297 1.21545 0.96180 1.01422 0.95877 1.21654 0.98824 0.97558 0.97642 1.22597 0.88893 0.94138 1.02996 1.61922 1.05483 1.36676 1.19855 1.22130 1.00527 0.89754 0.92453 1.19149 0.89391 0.96494 0.91289 1.20594 0.95944 1.28689 1.08785 0.93989 1.25322 1.00656 0.94209 0.94682 1.70049 1.35553 1.18445 1.28072 0.86388 0.83330 0.78687 0.77976 1.20154 1.21162 1.18589 1.22856 1.02577 0.94961 1.04089 1.22632 1.04882 0.91860 1.02347 0.91182 0.92196 0.94757 0.84216 0.91174 0.93054 0.90025 0.91073 0.90078 0.93493 0.91668 0.92852 0.99740 0.88117 0.87625 0.93947 0.93291 0.91026 0.92276 0.91796 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.70 127.69 1.37 2.10 16 2 N -0.70 -20.76 3.90 -537.16 -2.09 -22.85 16 3 C 0.08 2.18 4.70 86.30 0.41 2.59 16 4 C 0.08 2.74 2.16 44.94 0.10 2.84 16 5 H 0.01 0.38 7.99 -2.39 -0.02 0.36 16 6 C -0.10 -2.77 5.30 30.68 0.16 -2.61 16 7 C -0.11 -3.25 6.01 30.70 0.18 -3.06 16 8 C -0.12 -4.26 6.09 30.64 0.19 -4.07 16 9 C 0.04 1.86 4.06 86.33 0.35 2.21 16 10 N -0.52 -21.63 4.45 -871.10 -3.88 -25.51 16 11 C 0.08 3.70 4.15 86.31 0.36 4.06 16 12 C 0.04 1.90 1.89 -52.92 -0.10 1.80 16 13 C -0.50 -27.70 6.84 25.60 0.17 -27.53 16 14 H 0.04 2.37 7.88 -2.91 -0.02 2.35 16 15 C 0.05 2.88 3.30 84.66 0.28 3.16 16 16 N -0.88 -49.68 11.00 21.44 0.24 -49.45 16 17 Si 0.91 42.83 28.57 68.60 1.96 44.79 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 C -0.21 -9.84 9.91 30.62 0.30 -9.54 16 22 C -0.18 -8.15 9.96 30.62 0.30 -7.84 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.34 9.71 8.70 -89.69 -0.78 8.93 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.21 8.01 -2.38 -0.02 1.19 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H -0.02 -0.78 8.13 -2.39 -0.02 -0.80 16 36 H 0.10 5.13 3.10 -2.39 -0.01 5.12 16 37 H 0.11 4.67 4.51 -2.39 -0.01 4.66 16 38 H 0.04 2.31 5.49 -2.39 -0.01 2.30 16 39 H 0.26 14.02 8.32 -92.70 -0.77 13.25 16 40 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 41 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 42 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 Total: -1.00 -58.82 320.41 0.48 -58.34 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.19 Total: 30.60 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 4.07 Total: -35.92 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -5.74 Total: -97.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.96 Total: 44.79 kcal Total: -58.82 0.48 -58.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.268 kcal (2) G-P(sol) polarization free energy of solvation -58.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds