Wall clock time and date at job start Mon Mar 30 2020 04:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00298 * 2 1 4 4 C 1.53001 * 109.47159 * 309.48005 * 3 2 1 5 5 C 1.50698 * 115.55031 * 299.29821 * 4 3 2 6 6 H 1.07992 * 120.00203 * 144.20826 * 5 4 3 7 7 C 1.37879 * 119.99542 * 324.20077 * 5 4 3 8 8 N 1.31517 * 119.99791 * 174.53389 * 7 5 4 9 9 Si 1.86795 * 120.00333 * 354.53615 * 7 5 4 10 10 H 1.48506 * 109.46939 * 96.39608 * 9 7 5 11 11 H 1.48502 * 109.47179 * 216.39331 * 9 7 5 12 12 H 1.48503 * 109.47122 * 336.39548 * 9 7 5 13 13 C 1.53001 * 117.50053 * 153.62299 * 4 3 2 14 14 C 1.53008 * 117.49734 * 84.96762 * 4 3 2 15 15 C 1.46906 * 111.00025 * 123.95571 * 2 1 3 16 16 H 1.08996 * 110.01530 * 330.68922 * 15 2 1 17 17 C 1.54260 * 110.07448 * 209.26603 * 15 2 1 18 18 C 1.54885 * 104.19904 * 217.08293 * 17 15 2 19 19 C 1.54893 * 102.74787 * 37.94204 * 18 17 15 20 20 C 1.53876 * 110.03074 * 92.07697 * 15 2 1 21 21 H 1.09004 * 110.03357 * 238.61927 * 20 15 2 22 22 C 1.52994 * 110.07375 * 0.02562 * 20 15 2 23 23 N 1.46905 * 109.47353 * 179.35807 * 22 20 15 24 24 H 1.09002 * 109.47022 * 301.47647 * 1 2 3 25 25 H 1.09001 * 109.47226 * 61.48190 * 1 2 3 26 26 H 1.08999 * 109.47374 * 181.48342 * 1 2 3 27 27 H 1.09006 * 109.47257 * 69.47960 * 3 2 1 28 28 H 1.08995 * 109.47719 * 189.47970 * 3 2 1 29 29 H 0.96998 * 120.00248 * 180.02562 * 8 7 5 30 30 H 1.09007 * 117.49609 * 0.02562 * 13 4 3 31 31 H 1.08995 * 117.50016 * 145.01997 * 13 4 3 32 32 H 1.09002 * 117.49486 * 214.98156 * 14 4 3 33 33 H 1.08991 * 117.49737 * 359.97438 * 14 4 3 34 34 H 1.09004 * 110.48433 * 335.76248 * 17 15 2 35 35 H 1.09003 * 110.48420 * 98.26983 * 17 15 2 36 36 H 1.09000 * 110.75608 * 279.62959 * 18 17 15 37 37 H 1.09004 * 110.75849 * 156.25375 * 18 17 15 38 38 H 1.08999 * 110.48814 * 203.37570 * 19 18 17 39 39 H 1.09011 * 110.48643 * 80.73579 * 19 18 17 40 40 H 1.09002 * 109.47578 * 299.36008 * 22 20 15 41 41 H 1.08998 * 109.47610 * 59.36052 * 22 20 15 42 42 H 1.00899 * 110.99456 * 56.04789 * 23 22 20 43 43 H 1.00901 * 111.00133 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.3220 2.1762 -1.1134 5 6 1.5339 1.6550 -2.5114 6 1 0.7403 1.7264 -3.2404 7 6 2.7410 1.0871 -2.8598 8 7 2.8908 0.5358 -4.0445 9 14 4.1636 1.1007 -1.6494 10 1 4.2038 -0.1913 -0.9183 11 1 5.4387 1.2923 -2.3862 12 1 3.9794 2.2117 -0.6814 13 6 1.2280 3.6924 -0.9313 14 6 -0.0269 2.8261 -0.7985 15 6 1.9954 -0.7660 1.1376 16 1 1.2954 -0.7235 1.9720 17 6 3.3652 -0.2016 1.5675 18 6 4.1841 -1.4543 1.9663 19 6 3.7392 -2.5021 0.9159 20 6 2.2332 -2.2288 0.7232 21 1 1.6486 -2.8961 1.3566 22 6 1.8478 -2.4282 -0.7439 23 7 2.0943 -3.8241 -1.1296 24 1 -0.3633 0.5366 0.8765 25 1 -0.3634 0.4906 -0.9030 26 1 -0.3634 -1.0273 0.0266 27 1 1.7894 1.8397 0.9625 28 1 3.0719 1.3473 -0.1692 29 1 3.7398 0.1359 -4.2895 30 1 1.6464 4.1166 -0.0185 31 1 1.3191 4.3129 -1.8228 32 1 -0.7609 2.8769 -1.6027 33 1 -0.4347 2.6799 0.2016 34 1 3.8421 0.3171 0.7358 35 1 3.2511 0.4691 2.4192 36 1 3.9237 -1.7818 2.9728 37 1 5.2534 -1.2582 1.8872 38 1 3.8984 -3.5122 1.2934 39 1 4.2765 -2.3550 -0.0211 40 1 0.7912 -2.1957 -0.8769 41 1 2.4469 -1.7672 -1.3701 42 1 1.5999 -4.4598 -0.5217 43 1 1.8478 -3.9814 -2.0953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084214012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:44 Heat of formation + Delta-G solvation = 63.410112 kcal Electronic energy + Delta-G solvation = -20913.007129 eV Core-core repulsion = 18188.142494 eV Total energy + Delta-G solvation = -2724.864635 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.47997 -37.09443 -34.10674 -33.48197 -32.05328 -28.98667 -27.59110 -27.19210 -25.22510 -23.44160 -22.26034 -21.35168 -20.41326 -18.84287 -18.46346 -16.64077 -16.18304 -15.80641 -15.00209 -14.59848 -14.20368 -13.94609 -13.57092 -13.28118 -13.24667 -12.96138 -12.71373 -12.02509 -11.87939 -11.64959 -11.29524 -10.83436 -10.78034 -10.73496 -10.63818 -10.52722 -10.44336 -10.16126 -10.11498 -9.93540 -9.36364 -9.30664 -9.10376 -8.48044 -8.18088 -8.13127 -7.41929 -6.01106 -3.95853 3.32434 3.41293 3.48164 4.41813 4.51717 4.83630 4.88109 4.96011 5.18142 5.34556 5.49107 5.63109 5.66285 5.77040 5.82813 5.86048 5.90958 5.97038 6.00028 6.03932 6.14732 6.18307 6.22657 6.27672 6.34459 6.41396 6.49342 6.51453 6.57351 6.60433 6.74386 6.76901 6.86089 7.01688 7.08091 7.17022 7.60601 7.74821 7.86965 7.90122 7.93715 8.59357 8.99155 9.64839 11.10891 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.010691 C = 0.009869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.451851 B = 2618.392930 C = 2836.536279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.504 5.504 3 C 0.061 3.939 4 C 0.019 3.981 5 C -0.468 4.468 6 H 0.072 0.928 7 C 0.091 3.909 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.251 1.251 11 H -0.312 1.312 12 H -0.265 1.265 13 C -0.212 4.212 14 C -0.195 4.195 15 C 0.081 3.919 16 H 0.041 0.959 17 C -0.145 4.145 18 C -0.125 4.125 19 C -0.102 4.102 20 C -0.075 4.075 21 H 0.056 0.944 22 C 0.082 3.918 23 N -0.857 5.857 24 H 0.008 0.992 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.013 0.987 28 H 0.086 0.914 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.095 0.905 42 H 0.325 0.675 43 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 -4.738 11.073 12.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.227 5.227 3 C -0.065 4.065 4 C 0.018 3.982 5 C -0.505 4.505 6 H 0.090 0.910 7 C -0.112 4.112 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.177 1.177 11 H -0.242 1.242 12 H -0.193 1.193 13 C -0.251 4.251 14 C -0.232 4.232 15 C -0.028 4.028 16 H 0.059 0.941 17 C -0.183 4.183 18 C -0.163 4.163 19 C -0.139 4.139 20 C -0.095 4.095 21 H 0.074 0.926 22 C -0.048 4.048 23 N -0.385 5.385 24 H 0.027 0.973 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.082 -4.919 10.660 11.741 hybrid contribution -0.697 0.519 1.284 1.550 sum -0.778 -4.400 11.944 12.752 Atomic orbital electron populations 1.22513 0.87858 1.00038 1.01269 1.62021 1.07485 1.13389 1.39834 1.22676 1.00646 0.87647 0.95564 1.19349 0.94213 0.89116 0.95559 1.20150 1.00130 1.37905 0.92281 0.90981 1.24820 0.98272 0.93427 0.94688 1.69895 1.25271 1.37455 1.20669 0.87289 0.80931 0.79572 0.80146 1.17685 1.24195 1.19320 1.23179 1.03257 0.97912 1.00732 1.22852 0.92071 1.08490 0.99832 1.22364 0.95100 0.93959 0.91415 0.94093 1.23020 0.96041 0.97891 1.01310 1.22474 0.99257 0.95927 0.98682 1.22244 0.95393 0.97390 0.98906 1.21722 0.96406 0.94581 0.96803 0.92593 1.21764 0.99776 0.87939 0.95336 1.58830 1.66170 1.06015 1.07482 0.97338 0.89078 0.93077 0.96893 0.89719 0.92745 0.91799 0.89686 0.90071 0.91478 0.89649 0.92344 0.92137 0.92005 0.92350 0.90930 0.95097 0.88700 0.86485 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 7.51 60.06 0.45 1.02 16 2 N -0.50 -9.90 2.62 -233.55 -0.61 -10.51 16 3 C 0.06 1.29 2.59 -3.83 -0.01 1.28 16 4 C 0.02 0.43 0.65 -155.66 -0.10 0.33 16 5 C -0.47 -12.75 9.18 -34.44 -0.32 -13.07 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.09 2.53 5.46 -17.82 -0.10 2.44 16 8 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 9 Si 0.89 21.69 22.95 -169.99 -3.90 17.78 16 10 H -0.25 -5.82 5.67 56.52 0.32 -5.50 16 11 H -0.31 -7.97 7.11 56.52 0.40 -7.56 16 12 H -0.26 -6.24 5.80 56.52 0.33 -5.92 16 13 C -0.21 -4.52 9.95 -26.69 -0.27 -4.78 16 14 C -0.20 -3.96 7.87 -26.69 -0.21 -4.17 16 15 C 0.08 1.39 2.98 -66.59 -0.20 1.19 16 16 H 0.04 0.66 7.80 -51.93 -0.41 0.25 16 17 C -0.15 -2.44 5.14 -25.08 -0.13 -2.57 16 18 C -0.13 -1.83 6.91 -24.74 -0.17 -2.00 16 19 C -0.10 -1.60 6.05 -25.07 -0.15 -1.75 16 20 C -0.08 -1.21 3.12 -89.51 -0.28 -1.49 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 C 0.08 1.46 5.03 -3.82 -0.02 1.44 16 23 N -0.86 -13.06 9.30 -10.37 -0.10 -13.16 16 24 H 0.01 0.14 7.72 -51.93 -0.40 -0.26 16 25 H 0.09 1.84 5.72 -51.93 -0.30 1.55 16 26 H 0.05 0.84 6.65 -51.93 -0.35 0.50 16 27 H 0.01 0.26 7.98 -51.93 -0.41 -0.15 16 28 H 0.09 1.91 0.64 -51.93 -0.03 1.88 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 31 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.07 1.24 7.55 -51.93 -0.39 0.85 16 34 H 0.09 1.65 2.81 -51.93 -0.15 1.51 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.32 7.63 -51.92 -0.40 0.93 16 40 H 0.03 0.57 5.81 -51.93 -0.30 0.26 16 41 H 0.09 2.12 7.77 -51.93 -0.40 1.72 16 42 H 0.32 4.18 8.99 -39.29 -0.35 3.82 16 43 H 0.34 4.98 9.08 -39.29 -0.36 4.62 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -28.42 307.50 -8.04 -36.46 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.34 Total: 12.88 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.50 Total: -22.14 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.06 Total: -49.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -3.90 Total: 17.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.42 -8.04 -36.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.866 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds