Wall clock time and date at job start Mon Mar 30 2020 04:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00298 * 2 1 4 4 C 1.53001 * 109.47159 * 309.48005 * 3 2 1 5 5 C 1.50698 * 115.55031 * 299.29821 * 4 3 2 6 6 H 1.07992 * 120.00203 * 144.20826 * 5 4 3 7 7 C 1.37879 * 119.99542 * 324.20077 * 5 4 3 8 8 N 1.31517 * 119.99791 * 174.53389 * 7 5 4 9 9 Si 1.86795 * 120.00333 * 354.53615 * 7 5 4 10 10 H 1.48506 * 109.46939 * 96.39608 * 9 7 5 11 11 H 1.48502 * 109.47179 * 216.39331 * 9 7 5 12 12 H 1.48503 * 109.47122 * 336.39548 * 9 7 5 13 13 C 1.53001 * 117.50053 * 153.62299 * 4 3 2 14 14 C 1.53008 * 117.49734 * 84.96762 * 4 3 2 15 15 C 1.46906 * 111.00025 * 123.95571 * 2 1 3 16 16 H 1.08996 * 110.01530 * 330.68922 * 15 2 1 17 17 C 1.54260 * 110.07448 * 209.26603 * 15 2 1 18 18 C 1.54885 * 104.19904 * 217.08293 * 17 15 2 19 19 C 1.54893 * 102.74787 * 37.94204 * 18 17 15 20 20 C 1.53876 * 110.03074 * 92.07697 * 15 2 1 21 21 H 1.09004 * 110.03357 * 238.61927 * 20 15 2 22 22 C 1.52994 * 110.07375 * 0.02562 * 20 15 2 23 23 N 1.46905 * 109.47353 * 179.35807 * 22 20 15 24 24 H 1.09002 * 109.47022 * 301.47647 * 1 2 3 25 25 H 1.09001 * 109.47226 * 61.48190 * 1 2 3 26 26 H 1.08999 * 109.47374 * 181.48342 * 1 2 3 27 27 H 1.09006 * 109.47257 * 69.47960 * 3 2 1 28 28 H 1.08995 * 109.47719 * 189.47970 * 3 2 1 29 29 H 0.96998 * 120.00248 * 180.02562 * 8 7 5 30 30 H 1.09007 * 117.49609 * 0.02562 * 13 4 3 31 31 H 1.08995 * 117.50016 * 145.01997 * 13 4 3 32 32 H 1.09002 * 117.49486 * 214.98156 * 14 4 3 33 33 H 1.08991 * 117.49737 * 359.97438 * 14 4 3 34 34 H 1.09004 * 110.48433 * 335.76248 * 17 15 2 35 35 H 1.09003 * 110.48420 * 98.26983 * 17 15 2 36 36 H 1.09000 * 110.75608 * 279.62959 * 18 17 15 37 37 H 1.09004 * 110.75849 * 156.25375 * 18 17 15 38 38 H 1.08999 * 110.48814 * 203.37570 * 19 18 17 39 39 H 1.09011 * 110.48643 * 80.73579 * 19 18 17 40 40 H 1.09002 * 109.47578 * 299.36008 * 22 20 15 41 41 H 1.08998 * 109.47610 * 59.36052 * 22 20 15 42 42 H 1.00899 * 110.99456 * 56.04789 * 23 22 20 43 43 H 1.00901 * 111.00133 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.3220 2.1762 -1.1134 5 6 1.5339 1.6550 -2.5114 6 1 0.7403 1.7264 -3.2404 7 6 2.7410 1.0871 -2.8598 8 7 2.8908 0.5358 -4.0445 9 14 4.1636 1.1007 -1.6494 10 1 4.2038 -0.1913 -0.9183 11 1 5.4387 1.2923 -2.3862 12 1 3.9794 2.2117 -0.6814 13 6 1.2280 3.6924 -0.9313 14 6 -0.0269 2.8261 -0.7985 15 6 1.9954 -0.7660 1.1376 16 1 1.2954 -0.7235 1.9720 17 6 3.3652 -0.2016 1.5675 18 6 4.1841 -1.4543 1.9663 19 6 3.7392 -2.5021 0.9159 20 6 2.2332 -2.2288 0.7232 21 1 1.6486 -2.8961 1.3566 22 6 1.8478 -2.4282 -0.7439 23 7 2.0943 -3.8241 -1.1296 24 1 -0.3633 0.5366 0.8765 25 1 -0.3634 0.4906 -0.9030 26 1 -0.3634 -1.0273 0.0266 27 1 1.7894 1.8397 0.9625 28 1 3.0719 1.3473 -0.1692 29 1 3.7398 0.1359 -4.2895 30 1 1.6464 4.1166 -0.0185 31 1 1.3191 4.3129 -1.8228 32 1 -0.7609 2.8769 -1.6027 33 1 -0.4347 2.6799 0.2016 34 1 3.8421 0.3171 0.7358 35 1 3.2511 0.4691 2.4192 36 1 3.9237 -1.7818 2.9728 37 1 5.2534 -1.2582 1.8872 38 1 3.8984 -3.5122 1.2934 39 1 4.2765 -2.3550 -0.0211 40 1 0.7912 -2.1957 -0.8769 41 1 2.4469 -1.7672 -1.3701 42 1 1.5999 -4.4598 -0.5217 43 1 1.8478 -3.9814 -2.0953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:43 Heat of formation + Delta-G solvation = 43.688055 kcal Electronic energy + Delta-G solvation = -20913.862342 eV Core-core repulsion = 18188.142494 eV Total energy + Delta-G solvation = -2725.719848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88499 -38.68358 -35.57553 -34.78004 -34.19013 -30.35588 -28.89527 -28.75726 -27.16051 -24.86276 -23.67233 -23.01483 -21.76284 -20.63581 -19.81605 -18.20662 -18.09693 -17.15860 -16.58687 -15.96864 -15.65396 -15.53792 -14.98485 -14.82967 -14.69197 -14.63681 -14.37432 -13.55725 -13.52791 -13.20393 -12.92654 -12.40545 -12.30800 -12.16635 -12.03690 -11.92548 -11.85854 -11.67376 -11.46493 -11.43854 -11.15241 -11.07265 -10.94025 -10.40368 -10.06218 -9.42795 -8.84365 -8.19297 -6.16388 1.32944 1.47065 1.49220 2.43847 2.88539 3.17743 3.55541 3.62619 3.68552 3.92207 4.08248 4.14196 4.21140 4.39063 4.43814 4.48604 4.53665 4.59319 4.62019 4.68796 4.73926 4.78327 4.81129 4.87856 4.95560 5.01547 5.04916 5.09655 5.17458 5.19644 5.28128 5.33617 5.40507 5.47455 5.50241 5.67683 5.77781 6.27574 6.34498 6.42194 6.52654 6.74468 6.81322 7.47431 8.96083 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.010691 C = 0.009869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.451851 B = 2618.392930 C = 2836.536279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.526 5.526 3 C 0.068 3.932 4 C -0.010 4.010 5 C -0.464 4.464 6 H 0.025 0.975 7 C 0.041 3.959 8 N -0.946 5.946 9 Si 0.944 3.056 10 H -0.236 1.236 11 H -0.332 1.332 12 H -0.244 1.244 13 C -0.207 4.207 14 C -0.171 4.171 15 C 0.078 3.922 16 H 0.063 0.937 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.101 4.101 20 C -0.072 4.072 21 H 0.082 0.918 22 C 0.093 3.907 23 N -0.855 5.855 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.259 0.741 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.021 0.979 41 H 0.044 0.956 42 H 0.343 0.657 43 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.299 -5.124 15.049 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.249 5.249 3 C -0.058 4.058 4 C -0.011 4.011 5 C -0.501 4.501 6 H 0.043 0.957 7 C -0.157 4.157 8 N -0.586 5.586 9 Si 0.777 3.223 10 H -0.161 1.161 11 H -0.264 1.264 12 H -0.171 1.171 13 C -0.245 4.245 14 C -0.208 4.208 15 C -0.031 4.031 16 H 0.081 0.919 17 C -0.189 4.189 18 C -0.155 4.155 19 C -0.138 4.138 20 C -0.092 4.092 21 H 0.100 0.900 22 C -0.037 4.037 23 N -0.385 5.385 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.155 0.845 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.305 -5.301 14.671 15.602 hybrid contribution -0.758 0.631 -0.036 0.987 sum -1.063 -4.670 14.635 15.399 Atomic orbital electron populations 1.22399 0.87198 1.00864 1.00562 1.61927 1.08267 1.12775 1.41967 1.22468 0.99546 0.88468 0.95322 1.19303 0.97295 0.90537 0.93926 1.20255 0.98536 1.37359 0.93918 0.95667 1.25512 1.00820 0.93275 0.96067 1.70046 1.25759 1.39764 1.23036 0.86429 0.76597 0.80998 0.78248 1.16138 1.26355 1.17091 1.23196 1.03612 0.96218 1.01476 1.22827 0.90933 1.06041 1.00985 1.22498 0.95705 0.93805 0.91051 0.91949 1.23042 0.95837 0.99003 1.00969 1.22476 0.99264 0.94249 0.99547 1.22199 0.94679 0.99033 0.97932 1.21747 0.97073 0.94830 0.95519 0.89957 1.21467 0.98020 0.88236 0.96003 1.58746 1.66534 1.05183 1.08038 0.95384 0.92065 0.91732 0.94845 0.91007 0.93166 0.89110 0.90872 0.90984 0.88562 0.92502 0.90389 0.89229 0.91555 0.90467 0.94363 0.96092 0.93778 0.84477 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.28 7.51 127.69 0.96 2.24 16 2 N -0.53 -19.64 2.62 -892.81 -2.34 -21.99 16 3 C 0.07 2.74 2.59 86.31 0.22 2.97 16 4 C -0.01 -0.43 0.65 -52.93 -0.03 -0.46 16 5 C -0.46 -26.19 9.18 25.60 0.23 -25.96 16 6 H 0.03 1.61 8.06 -2.91 -0.02 1.58 16 7 C 0.04 2.38 5.46 84.65 0.46 2.84 16 8 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 9 Si 0.94 46.17 22.95 68.60 1.57 47.75 16 10 H -0.24 -10.90 5.67 99.48 0.56 -10.34 16 11 H -0.33 -17.09 7.11 99.48 0.71 -16.39 16 12 H -0.24 -10.98 5.80 99.48 0.58 -10.40 16 13 C -0.21 -8.37 9.95 30.62 0.30 -8.06 16 14 C -0.17 -6.59 7.87 30.62 0.24 -6.35 16 15 C 0.08 2.40 2.98 45.64 0.14 2.54 16 16 H 0.06 1.67 7.80 -2.39 -0.02 1.65 16 17 C -0.15 -4.51 5.14 31.67 0.16 -4.35 16 18 C -0.12 -2.95 6.91 31.89 0.22 -2.73 16 19 C -0.10 -2.89 6.05 31.67 0.19 -2.70 16 20 C -0.07 -2.11 3.12 -10.07 -0.03 -2.14 16 21 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 22 C 0.09 3.27 5.03 86.30 0.43 3.71 16 23 N -0.86 -25.26 9.30 -186.72 -1.74 -27.00 16 24 H 0.03 0.84 7.72 -2.39 -0.02 0.82 16 25 H 0.06 2.45 5.72 -2.39 -0.01 2.43 16 26 H 0.06 2.00 6.65 -2.39 -0.02 1.98 16 27 H 0.03 1.21 7.98 -2.38 -0.02 1.19 16 28 H 0.07 3.09 0.64 -2.39 0.00 3.09 16 29 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 31 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.10 3.18 7.55 -2.39 -0.02 3.16 16 34 H 0.06 2.04 2.81 -2.39 -0.01 2.04 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.35 7.63 -2.38 -0.02 1.33 16 40 H 0.02 0.76 5.81 -2.39 -0.01 0.75 16 41 H 0.04 2.01 7.77 -2.39 -0.02 1.99 16 42 H 0.34 8.06 8.99 -89.69 -0.81 7.25 16 43 H 0.34 9.98 9.08 -89.69 -0.81 9.16 16 Total: -1.00 -64.91 307.50 0.41 -64.50 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.88 Total: 34.54 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 3.50 Total: -38.46 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.78 Total: -108.33 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.57 Total: 47.75 kcal Total: -64.91 0.41 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.186 kcal (2) G-P(sol) polarization free energy of solvation -64.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds