Wall clock time and date at job start Mon Mar 30 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99871 * 2 1 4 4 C 1.52996 * 109.47198 * 284.53141 * 3 2 1 5 5 C 1.50704 * 115.55231 * 161.77207 * 4 3 2 6 6 H 1.08006 * 119.99926 * 143.80220 * 5 4 3 7 7 C 1.37871 * 120.00185 * 323.80526 * 5 4 3 8 8 N 1.31513 * 120.00435 * 178.28235 * 7 5 4 9 9 Si 1.86805 * 119.99727 * 358.27918 * 7 5 4 10 10 H 1.48503 * 109.47083 * 95.89146 * 9 7 5 11 11 H 1.48501 * 109.47137 * 215.88732 * 9 7 5 12 12 H 1.48502 * 109.47098 * 335.88795 * 9 7 5 13 13 C 1.53000 * 117.49761 * 16.06304 * 4 3 2 14 14 C 1.52996 * 117.49901 * 307.44202 * 4 3 2 15 15 C 1.46903 * 110.99732 * 123.95208 * 2 1 3 16 16 H 1.09005 * 110.05742 * 295.07556 * 15 2 1 17 17 C 1.54262 * 110.03269 * 56.49690 * 15 2 1 18 18 C 1.54889 * 104.19419 * 142.89372 * 17 15 2 19 19 C 1.55012 * 102.75649 * 322.04261 * 18 17 15 20 20 C 1.53879 * 110.02685 * 173.66187 * 15 2 1 21 21 H 1.09001 * 110.03405 * 0.05133 * 20 15 2 22 22 C 1.53006 * 110.02920 * 121.43314 * 20 15 2 23 23 N 1.46903 * 109.46805 * 184.30956 * 22 20 15 24 24 H 1.09009 * 109.46901 * 281.21944 * 1 2 3 25 25 H 1.08999 * 109.47168 * 41.21560 * 1 2 3 26 26 H 1.08999 * 109.47115 * 161.21928 * 1 2 3 27 27 H 1.09004 * 109.47297 * 44.52908 * 3 2 1 28 28 H 1.09000 * 109.47648 * 164.53248 * 3 2 1 29 29 H 0.97001 * 120.00114 * 179.97438 * 8 7 5 30 30 H 1.08999 * 117.50168 * 0.02562 * 13 4 3 31 31 H 1.09005 * 117.49510 * 145.02005 * 13 4 3 32 32 H 1.09001 * 117.50444 * 214.97983 * 14 4 3 33 33 H 1.09003 * 117.50319 * 359.97438 * 14 4 3 34 34 H 1.08998 * 110.48457 * 261.56929 * 17 15 2 35 35 H 1.09001 * 110.48776 * 24.07997 * 17 15 2 36 36 H 1.08994 * 110.76093 * 80.37021 * 18 17 15 37 37 H 1.09005 * 110.75768 * 203.55948 * 18 17 15 38 38 H 1.09004 * 110.50957 * 279.30137 * 19 18 17 39 39 H 1.09000 * 110.52727 * 156.61782 * 19 18 17 40 40 H 1.09002 * 109.47338 * 64.30555 * 22 20 15 41 41 H 1.08995 * 109.47090 * 304.30595 * 22 20 15 42 42 H 1.00896 * 111.00271 * 56.04091 * 23 22 20 43 43 H 1.00897 * 110.99377 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8403 1.9772 -1.3963 5 6 1.9272 3.4801 -1.4661 6 1 2.3987 3.9550 -2.3139 7 6 1.4048 4.2489 -0.4478 8 7 1.5105 5.5591 -0.4923 9 14 0.5468 3.4296 0.9951 10 1 1.5083 3.2665 2.1150 11 1 -0.5912 4.2742 1.4388 12 1 0.0412 2.0969 0.5785 13 6 0.8869 1.2784 -2.3676 14 6 2.3993 1.1817 -2.5776 15 6 1.9954 -0.7660 1.1377 16 1 1.7242 -0.2784 2.0741 17 6 1.4379 -2.2041 1.1097 18 6 2.6205 -3.0793 1.5941 19 6 3.8458 -2.3920 0.9391 20 6 3.5258 -0.8856 1.0295 21 1 3.8779 -0.3745 0.1334 22 6 4.1875 -0.2828 2.2704 23 7 5.6473 -0.3098 2.1087 24 1 -0.3633 0.2000 1.0081 25 1 -0.3633 0.7730 -0.6771 26 1 -0.3633 -0.9729 -0.3308 27 1 1.4417 1.9732 0.7207 28 1 3.0503 1.3558 0.2741 29 1 1.1427 6.0999 0.2240 30 1 0.3698 0.3873 -2.0118 31 1 0.3221 1.9057 -3.0573 32 1 2.8295 1.7453 -3.4055 33 1 2.8779 0.2269 -2.3601 34 1 0.5906 -2.2979 1.7889 35 1 1.1460 -2.4804 0.0966 36 1 2.6991 -3.0553 2.6809 37 1 2.5135 -4.1042 1.2386 38 1 3.9446 -2.6991 -0.1021 39 1 4.7553 -2.6228 1.4938 40 1 3.9084 -0.8637 3.1495 41 1 3.8548 0.7476 2.3953 42 1 5.9266 0.1676 1.2649 43 1 6.1078 0.0829 2.9161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084214013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:46 Heat of formation + Delta-G solvation = 63.404160 kcal Electronic energy + Delta-G solvation = -20420.183784 eV Core-core repulsion = 17695.318890 eV Total energy + Delta-G solvation = -2724.864893 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.60747 -37.30081 -34.51253 -33.45638 -32.15721 -29.10433 -27.89841 -27.36463 -25.51335 -24.06869 -22.29924 -21.12243 -20.06235 -19.33286 -18.90320 -16.55943 -16.13192 -15.96341 -15.56803 -14.80123 -14.65528 -14.14062 -13.81801 -13.50378 -13.36104 -12.94323 -12.63406 -12.32687 -12.14073 -11.89643 -11.30394 -11.29340 -10.90257 -10.87741 -10.81083 -10.64647 -10.50856 -10.30896 -10.27828 -10.05208 -9.42338 -9.16145 -9.06720 -8.78103 -8.66871 -8.27763 -7.51358 -6.15181 -4.10606 3.18240 3.25801 3.35955 4.25427 4.34300 4.53895 4.72420 4.89072 4.93506 5.06777 5.31881 5.45137 5.46112 5.58414 5.64528 5.72241 5.73803 5.76643 5.82962 5.85903 5.96791 6.03791 6.07954 6.14651 6.21592 6.26812 6.36631 6.39159 6.45720 6.51390 6.55661 6.72242 6.77342 6.97028 7.11924 7.17217 7.39030 7.42888 7.48866 7.63804 7.82720 8.52855 8.89153 9.47384 10.97020 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.008272 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.072446 B = 3384.102030 C = 3646.936037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.525 5.525 3 C 0.075 3.925 4 C 0.013 3.987 5 C -0.478 4.478 6 H 0.077 0.923 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.293 1.293 11 H -0.307 1.307 12 H -0.235 1.235 13 C -0.213 4.213 14 C -0.179 4.179 15 C 0.082 3.918 16 H 0.035 0.965 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.107 4.107 20 C -0.086 4.086 21 H 0.086 0.914 22 C 0.065 3.935 23 N -0.849 5.849 24 H 0.016 0.984 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.264 0.736 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.343 0.657 43 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 -14.991 5.656 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.249 5.249 3 C -0.051 4.051 4 C 0.011 3.989 5 C -0.516 4.516 6 H 0.095 0.905 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.221 1.221 11 H -0.236 1.236 12 H -0.160 1.160 13 C -0.250 4.250 14 C -0.216 4.216 15 C -0.027 4.027 16 H 0.053 0.947 17 C -0.153 4.153 18 C -0.161 4.161 19 C -0.144 4.144 20 C -0.105 4.105 21 H 0.105 0.895 22 C -0.066 4.066 23 N -0.378 5.378 24 H 0.035 0.965 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.155 0.845 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.944 -15.815 5.283 16.787 hybrid contribution -0.789 1.356 1.670 2.291 sum 1.155 -14.459 6.953 16.085 Atomic orbital electron populations 1.22743 0.88222 1.02134 1.00141 1.62213 1.07458 1.14420 1.40799 1.22286 0.98732 0.86346 0.97753 1.19247 0.99910 0.93242 0.86467 1.20492 1.37345 0.86645 1.07114 0.90522 1.25061 0.95311 0.94683 0.98164 1.69889 1.45634 1.04403 1.33550 0.87078 0.79373 0.79471 0.82240 1.22132 1.23596 1.16042 1.23426 0.92290 1.03026 1.06290 1.22618 0.96385 1.00813 1.01764 1.22335 0.94197 0.94191 0.92022 0.94741 1.22419 0.97284 0.93852 1.01733 1.22485 0.95365 0.98417 0.99846 1.22284 0.97850 0.93711 1.00582 1.21808 0.93523 0.96974 0.98191 0.89542 1.21904 0.87884 0.98448 0.98350 1.58750 1.06856 1.64171 1.07989 0.96541 0.88846 0.92314 0.95413 0.91355 0.92594 0.89135 0.90930 0.91074 0.90591 0.92470 0.90418 0.92107 0.91909 0.91911 0.90621 0.91413 0.95634 0.84486 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 6.17 60.07 0.37 0.63 16 2 N -0.53 -9.29 3.73 -233.53 -0.87 -10.16 16 3 C 0.07 1.57 3.94 -3.83 -0.02 1.56 16 4 C 0.01 0.29 1.89 -155.66 -0.29 0.00 16 5 C -0.48 -13.40 9.63 -34.44 -0.33 -13.73 16 6 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 9 Si 0.88 21.47 24.63 -169.99 -4.19 17.28 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 12 H -0.23 -5.14 2.50 56.52 0.14 -4.99 16 13 C -0.21 -4.50 8.28 -26.73 -0.22 -4.72 16 14 C -0.18 -3.76 9.75 -26.73 -0.26 -4.02 16 15 C 0.08 1.25 2.24 -66.59 -0.15 1.10 16 16 H 0.03 0.56 7.67 -51.93 -0.40 0.17 16 17 C -0.11 -1.47 5.43 -25.07 -0.14 -1.60 16 18 C -0.12 -1.38 6.91 -24.67 -0.17 -1.55 16 19 C -0.11 -1.32 6.30 -25.00 -0.16 -1.47 16 20 C -0.09 -1.22 1.99 -89.50 -0.18 -1.39 16 21 H 0.09 1.40 6.76 -51.93 -0.35 1.05 16 22 C 0.07 0.87 5.78 -3.82 -0.02 0.85 16 23 N -0.85 -10.00 9.08 -10.37 -0.09 -10.10 16 24 H 0.02 0.27 7.55 -51.92 -0.39 -0.12 16 25 H 0.09 1.76 4.41 -51.93 -0.23 1.53 16 26 H 0.06 0.86 7.28 -51.93 -0.38 0.48 16 27 H 0.03 0.64 1.18 -51.93 -0.06 0.58 16 28 H 0.07 1.43 5.96 -51.93 -0.31 1.12 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.09 1.75 4.72 -51.93 -0.25 1.50 16 31 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.03 7.50 -51.93 -0.39 0.64 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.93 7.45 -51.93 -0.39 0.54 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.03 0.39 7.97 -51.93 -0.41 -0.02 16 42 H 0.34 4.04 8.99 -39.29 -0.35 3.69 16 43 H 0.34 3.41 9.08 -39.29 -0.36 3.06 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -29.27 309.92 -8.84 -38.11 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.46 Total: 9.21 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.66 Total: -22.47 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.19 Total: -46.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.19 Total: 17.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.27 -8.84 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.511 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds