Wall clock time and date at job start Mon Mar 30 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99871 * 2 1 4 4 C 1.52996 * 109.47198 * 284.53141 * 3 2 1 5 5 C 1.50704 * 115.55231 * 161.77207 * 4 3 2 6 6 H 1.08006 * 119.99926 * 143.80220 * 5 4 3 7 7 C 1.37871 * 120.00185 * 323.80526 * 5 4 3 8 8 N 1.31513 * 120.00435 * 178.28235 * 7 5 4 9 9 Si 1.86805 * 119.99727 * 358.27918 * 7 5 4 10 10 H 1.48503 * 109.47083 * 95.89146 * 9 7 5 11 11 H 1.48501 * 109.47137 * 215.88732 * 9 7 5 12 12 H 1.48502 * 109.47098 * 335.88795 * 9 7 5 13 13 C 1.53000 * 117.49761 * 16.06304 * 4 3 2 14 14 C 1.52996 * 117.49901 * 307.44202 * 4 3 2 15 15 C 1.46903 * 110.99732 * 123.95208 * 2 1 3 16 16 H 1.09005 * 110.05742 * 295.07556 * 15 2 1 17 17 C 1.54262 * 110.03269 * 56.49690 * 15 2 1 18 18 C 1.54889 * 104.19419 * 142.89372 * 17 15 2 19 19 C 1.55012 * 102.75649 * 322.04261 * 18 17 15 20 20 C 1.53879 * 110.02685 * 173.66187 * 15 2 1 21 21 H 1.09001 * 110.03405 * 0.05133 * 20 15 2 22 22 C 1.53006 * 110.02920 * 121.43314 * 20 15 2 23 23 N 1.46903 * 109.46805 * 184.30956 * 22 20 15 24 24 H 1.09009 * 109.46901 * 281.21944 * 1 2 3 25 25 H 1.08999 * 109.47168 * 41.21560 * 1 2 3 26 26 H 1.08999 * 109.47115 * 161.21928 * 1 2 3 27 27 H 1.09004 * 109.47297 * 44.52908 * 3 2 1 28 28 H 1.09000 * 109.47648 * 164.53248 * 3 2 1 29 29 H 0.97001 * 120.00114 * 179.97438 * 8 7 5 30 30 H 1.08999 * 117.50168 * 0.02562 * 13 4 3 31 31 H 1.09005 * 117.49510 * 145.02005 * 13 4 3 32 32 H 1.09001 * 117.50444 * 214.97983 * 14 4 3 33 33 H 1.09003 * 117.50319 * 359.97438 * 14 4 3 34 34 H 1.08998 * 110.48457 * 261.56929 * 17 15 2 35 35 H 1.09001 * 110.48776 * 24.07997 * 17 15 2 36 36 H 1.08994 * 110.76093 * 80.37021 * 18 17 15 37 37 H 1.09005 * 110.75768 * 203.55948 * 18 17 15 38 38 H 1.09004 * 110.50957 * 279.30137 * 19 18 17 39 39 H 1.09000 * 110.52727 * 156.61782 * 19 18 17 40 40 H 1.09002 * 109.47338 * 64.30555 * 22 20 15 41 41 H 1.08995 * 109.47090 * 304.30595 * 22 20 15 42 42 H 1.00896 * 111.00271 * 56.04091 * 23 22 20 43 43 H 1.00897 * 110.99377 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8403 1.9772 -1.3963 5 6 1.9272 3.4801 -1.4661 6 1 2.3987 3.9550 -2.3139 7 6 1.4048 4.2489 -0.4478 8 7 1.5105 5.5591 -0.4923 9 14 0.5468 3.4296 0.9951 10 1 1.5083 3.2665 2.1150 11 1 -0.5912 4.2742 1.4388 12 1 0.0412 2.0969 0.5785 13 6 0.8869 1.2784 -2.3676 14 6 2.3993 1.1817 -2.5776 15 6 1.9954 -0.7660 1.1377 16 1 1.7242 -0.2784 2.0741 17 6 1.4379 -2.2041 1.1097 18 6 2.6205 -3.0793 1.5941 19 6 3.8458 -2.3920 0.9391 20 6 3.5258 -0.8856 1.0295 21 1 3.8779 -0.3745 0.1334 22 6 4.1875 -0.2828 2.2704 23 7 5.6473 -0.3098 2.1087 24 1 -0.3633 0.2000 1.0081 25 1 -0.3633 0.7730 -0.6771 26 1 -0.3633 -0.9729 -0.3308 27 1 1.4417 1.9732 0.7207 28 1 3.0503 1.3558 0.2741 29 1 1.1427 6.0999 0.2240 30 1 0.3698 0.3873 -2.0118 31 1 0.3221 1.9057 -3.0573 32 1 2.8295 1.7453 -3.4055 33 1 2.8779 0.2269 -2.3601 34 1 0.5906 -2.2979 1.7889 35 1 1.1460 -2.4804 0.0966 36 1 2.6991 -3.0553 2.6809 37 1 2.5135 -4.1042 1.2386 38 1 3.9446 -2.6991 -0.1021 39 1 4.7553 -2.6228 1.4938 40 1 3.9084 -0.8637 3.1495 41 1 3.8548 0.7476 2.3953 42 1 5.9266 0.1676 1.2649 43 1 6.1078 0.0829 2.9161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:46 Heat of formation + Delta-G solvation = 42.777706 kcal Electronic energy + Delta-G solvation = -20421.078214 eV Core-core repulsion = 17695.318890 eV Total energy + Delta-G solvation = -2725.759324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91181 -38.77182 -35.85508 -34.63201 -34.26032 -30.27081 -29.30176 -28.67034 -27.33310 -25.34355 -23.55577 -22.81960 -21.15176 -20.90335 -20.38143 -18.38126 -17.62238 -17.35953 -16.90808 -16.03878 -15.91607 -15.41762 -15.21624 -15.01148 -14.81646 -14.44354 -14.15506 -13.86721 -13.54020 -13.16973 -12.88751 -12.83655 -12.47557 -12.29009 -11.95879 -11.81028 -11.74909 -11.66587 -11.57991 -11.30978 -11.23957 -11.08144 -10.87158 -10.60727 -10.17913 -9.66379 -9.01894 -8.37038 -6.36720 1.20528 1.30069 1.39870 2.25684 2.82838 2.99081 3.50406 3.52420 3.70156 3.93526 3.99437 4.13446 4.22338 4.34729 4.40893 4.41483 4.52618 4.54809 4.57883 4.62809 4.67062 4.78640 4.83516 4.91839 4.95146 5.04630 5.10755 5.11534 5.18553 5.20746 5.26833 5.38862 5.42857 5.44958 5.57648 5.64724 5.68532 6.06442 6.13681 6.25599 6.37012 6.53140 6.67535 7.24657 8.78873 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.008272 C = 0.007676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.072446 B = 3384.102030 C = 3646.936037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.523 5.523 3 C 0.087 3.913 4 C -0.013 4.013 5 C -0.486 4.486 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.294 1.294 11 H -0.317 1.317 12 H -0.195 1.195 13 C -0.193 4.193 14 C -0.165 4.165 15 C 0.077 3.923 16 H 0.027 0.973 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.100 4.100 20 C -0.085 4.085 21 H 0.063 0.937 22 C 0.070 3.930 23 N -0.845 5.845 24 H 0.021 0.979 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.013 0.987 28 H 0.064 0.936 29 H 0.265 0.735 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.001 0.999 42 H 0.342 0.658 43 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 -18.766 6.855 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.246 5.246 3 C -0.040 4.040 4 C -0.014 4.014 5 C -0.524 4.524 6 H 0.048 0.952 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.779 3.221 10 H -0.222 1.222 11 H -0.247 1.247 12 H -0.119 1.119 13 C -0.230 4.230 14 C -0.202 4.202 15 C -0.032 4.032 16 H 0.045 0.955 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.138 4.138 20 C -0.104 4.104 21 H 0.082 0.918 22 C -0.061 4.061 23 N -0.375 5.375 24 H 0.040 0.960 25 H 0.093 0.907 26 H 0.109 0.891 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.019 0.981 42 H 0.154 0.846 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.223 -19.628 6.465 20.701 hybrid contribution -0.461 2.563 1.192 2.864 sum 0.762 -17.065 7.657 18.719 Atomic orbital electron populations 1.22819 0.87501 1.03358 1.00153 1.62201 1.08062 1.12068 1.42283 1.21964 0.98608 0.88093 0.95343 1.19146 1.02751 0.90697 0.88835 1.20715 1.36419 0.89751 1.05544 0.95230 1.25914 0.96185 0.95043 1.01292 1.70047 1.47632 1.06272 1.34917 0.86121 0.77806 0.80030 0.78181 1.22192 1.24720 1.11859 1.23412 0.92254 1.03069 1.04295 1.22618 0.96685 1.00909 0.99990 1.22502 0.94858 0.95312 0.90558 0.95519 1.22395 0.98170 0.91875 1.02205 1.22463 0.93714 0.98893 1.00235 1.22221 0.98618 0.92210 1.00719 1.21776 0.93025 0.98229 0.97347 0.91840 1.21833 0.88630 0.97131 0.98552 1.58753 1.06040 1.64173 1.08498 0.96021 0.90661 0.89078 0.97010 0.91809 0.92632 0.86276 0.92177 0.92155 0.88410 0.91192 0.90396 0.91336 0.90107 0.92091 0.90480 0.90290 0.98072 0.84589 0.83942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 6.17 127.69 0.79 1.05 16 2 N -0.52 -16.84 3.73 -892.76 -3.33 -20.17 16 3 C 0.09 3.52 3.94 86.30 0.34 3.86 16 4 C -0.01 -0.60 1.89 -52.93 -0.10 -0.70 16 5 C -0.49 -28.28 9.63 25.60 0.25 -28.03 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 7 C 0.01 0.74 5.47 84.65 0.46 1.20 16 8 N -0.95 -60.40 13.96 21.44 0.30 -60.11 16 9 Si 0.95 45.08 24.63 68.60 1.69 46.77 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.32 -15.49 7.11 99.48 0.71 -14.78 16 12 H -0.19 -7.99 2.50 99.48 0.25 -7.74 16 13 C -0.19 -7.82 8.28 30.59 0.25 -7.57 16 14 C -0.16 -6.76 9.75 30.59 0.30 -6.46 16 15 C 0.08 2.09 2.24 45.64 0.10 2.19 16 16 H 0.03 0.79 7.67 -2.38 -0.02 0.77 16 17 C -0.11 -2.27 5.43 31.67 0.17 -2.10 16 18 C -0.12 -2.07 6.91 31.93 0.22 -1.85 16 19 C -0.10 -2.14 6.30 31.71 0.20 -1.94 16 20 C -0.08 -2.20 1.99 -10.07 -0.02 -2.22 16 21 H 0.06 1.96 6.76 -2.39 -0.02 1.94 16 22 C 0.07 1.75 5.78 86.30 0.50 2.25 16 23 N -0.85 -18.61 9.08 -186.71 -1.70 -20.30 16 24 H 0.02 0.63 7.55 -2.38 -0.02 0.61 16 25 H 0.07 2.54 4.41 -2.39 -0.01 2.53 16 26 H 0.09 2.18 7.28 -2.39 -0.02 2.16 16 27 H 0.01 0.56 1.18 -2.38 0.00 0.55 16 28 H 0.06 2.63 5.96 -2.39 -0.01 2.62 16 29 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.12 4.17 4.72 -2.39 -0.01 4.16 16 31 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.66 7.50 -2.39 -0.02 1.65 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.08 1.64 7.45 -2.39 -0.02 1.62 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.00 0.03 7.97 -2.39 -0.02 0.01 16 42 H 0.34 7.74 8.99 -89.70 -0.81 6.94 16 43 H 0.35 6.48 9.08 -89.70 -0.81 5.67 16 Total: -1.00 -65.54 309.92 -0.65 -66.19 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -1.07 Total: 27.94 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 3.46 Total: -40.32 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.73 Total: -100.58 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.69 Total: 46.77 kcal Total: -65.54 -0.65 -66.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.969 kcal (2) G-P(sol) polarization free energy of solvation -65.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds