Wall clock time and date at job start Mon Mar 30 2020 04:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 110.99844 * 2 1 4 4 C 1.52999 * 109.47217 * 72.79920 * 3 2 1 5 5 C 1.50697 * 115.54683 * 55.05875 * 4 3 2 6 6 H 1.08003 * 120.00002 * 265.03019 * 5 4 3 7 7 C 1.37881 * 120.00448 * 85.02739 * 5 4 3 8 8 N 1.31518 * 119.99766 * 355.01035 * 7 5 4 9 9 Si 1.86800 * 120.00275 * 175.00926 * 7 5 4 10 10 H 1.48497 * 109.47081 * 60.00217 * 9 7 5 11 11 H 1.48500 * 109.46937 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46919 * 299.99752 * 9 7 5 13 13 C 1.52999 * 117.50058 * 269.38606 * 4 3 2 14 14 C 1.53000 * 117.49988 * 200.72154 * 4 3 2 15 15 C 1.46905 * 111.00032 * 236.04533 * 2 1 3 16 16 C 1.52996 * 109.47106 * 298.95085 * 15 2 1 17 17 C 1.53001 * 109.47096 * 180.02562 * 16 15 2 18 18 C 1.53005 * 109.46888 * 300.00152 * 17 16 15 19 19 N 1.46899 * 109.46736 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46891 * 60.00202 * 18 17 16 21 21 C 1.52994 * 109.47029 * 58.95673 * 15 2 1 22 22 H 1.09009 * 109.47172 * 179.12501 * 1 2 3 23 23 H 1.08994 * 109.47547 * 299.12591 * 1 2 3 24 24 H 1.08998 * 109.47175 * 59.13016 * 1 2 3 25 25 H 1.08998 * 109.47298 * 192.80397 * 3 2 1 26 26 H 1.08999 * 109.46768 * 312.80092 * 3 2 1 27 27 H 0.96993 * 120.00052 * 185.15223 * 8 7 5 28 28 H 1.09001 * 117.49488 * 0.02562 * 13 4 3 29 29 H 1.09002 * 117.49721 * 145.01987 * 13 4 3 30 30 H 1.08994 * 117.50322 * 214.97894 * 14 4 3 31 31 H 1.09007 * 117.49651 * 359.97438 * 14 4 3 32 32 H 1.08999 * 109.46555 * 178.95417 * 15 2 1 33 33 H 1.08999 * 109.46717 * 60.00046 * 16 15 2 34 34 H 1.09003 * 109.47152 * 300.00265 * 16 15 2 35 35 H 1.08998 * 109.47098 * 59.99898 * 17 16 15 36 36 H 1.08997 * 109.47197 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47044 * 299.99780 * 18 17 16 38 38 H 1.00896 * 111.00142 * 180.02562 * 19 18 17 39 39 H 1.00905 * 110.99672 * 303.95251 * 19 18 17 40 40 H 1.09003 * 109.46667 * 179.97438 * 20 18 17 41 41 H 1.08998 * 109.47621 * 59.99932 * 20 18 17 42 42 H 1.08999 * 109.47243 * 299.99322 * 21 15 2 43 43 H 1.08998 * 109.47861 * 59.99996 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7799 2.0005 1.3780 5 6 2.3476 1.2282 2.5408 6 1 1.7195 0.5456 3.0940 7 6 3.6689 1.3930 2.8987 8 7 4.4591 2.1479 2.1670 9 14 4.3367 0.5440 4.4228 10 1 4.1852 -0.9260 4.2770 11 1 5.7738 0.8802 4.5870 12 1 3.5819 1.0036 5.6162 13 6 0.4764 2.7677 1.6083 14 6 1.7978 3.5277 1.4680 15 6 1.9954 -0.7660 -1.1376 16 6 1.5263 -2.2187 -1.0351 17 6 2.0752 -3.0166 -2.2196 18 6 1.5639 -2.4065 -3.5262 19 7 2.0903 -3.1730 -4.6634 20 6 2.0331 -0.9538 -3.6287 21 6 1.4837 -0.1557 -2.4439 22 1 -0.3634 -1.0276 -0.0157 23 1 -0.3634 0.5002 0.8976 24 1 -0.3633 0.5273 -0.8821 25 1 3.0611 1.3516 -0.2277 26 1 1.4737 1.9608 -0.7540 27 1 5.4048 2.2045 2.3750 28 1 -0.2278 2.8240 0.7783 29 1 0.0296 2.7142 2.6011 30 1 2.2197 3.9739 2.3685 31 1 1.9635 4.0844 0.5456 32 1 3.0849 -0.7342 -1.1239 33 1 0.4369 -2.2504 -1.0487 34 1 1.8909 -2.6534 -0.1044 35 1 3.1646 -2.9848 -2.2056 36 1 1.7406 -4.0514 -2.1468 37 1 0.4745 -2.4384 -3.5403 38 1 1.7671 -2.7893 -5.5388 39 1 3.0982 -3.2132 -4.6368 40 1 1.6692 -0.5193 -4.5598 41 1 3.1225 -0.9220 -3.6146 42 1 0.3943 -0.1875 -2.4576 43 1 1.8179 0.8792 -2.5170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085869856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:41 Heat of formation + Delta-G solvation = 16.142066 kcal Electronic energy + Delta-G solvation = -19838.442728 eV Core-core repulsion = 17111.528397 eV Total energy + Delta-G solvation = -2726.914332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.36492 -37.04204 -35.13798 -31.97145 -31.68099 -30.64677 -27.16772 -26.92889 -25.23533 -23.28029 -22.50638 -21.03616 -20.61203 -19.21864 -18.79454 -16.07266 -15.75128 -15.61753 -14.81725 -14.52255 -14.23126 -14.06630 -13.95059 -13.43268 -12.98123 -12.91802 -12.35937 -12.20791 -11.97326 -11.53565 -11.41113 -11.20701 -10.93294 -10.84564 -10.81345 -10.77295 -10.48899 -10.36484 -10.13493 -10.08104 -10.00123 -9.33471 -8.77242 -8.69509 -8.29020 -7.96494 -7.28793 -5.87321 -3.88610 3.40183 3.43915 3.47615 4.39892 4.53259 4.68276 4.75413 4.92155 5.25364 5.27710 5.39481 5.41497 5.48395 5.58987 5.61765 5.67262 5.86300 5.94615 5.98811 6.06235 6.12254 6.18476 6.23095 6.29247 6.33393 6.39441 6.53015 6.54281 6.61663 6.69425 6.76376 6.79520 7.01243 7.04568 7.16969 7.31643 7.53488 7.61133 7.98362 8.05427 8.10786 8.63600 9.08946 9.73377 11.22169 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.006194 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.386438 B = 4519.616786 C = 5059.113838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.507 5.507 3 C 0.107 3.893 4 C 0.057 3.943 5 C -0.461 4.461 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.890 5.890 9 Si 0.887 3.113 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.279 1.279 13 C -0.217 4.217 14 C -0.159 4.159 15 C 0.087 3.913 16 C -0.109 4.109 17 C -0.108 4.108 18 C 0.090 3.910 19 N -0.847 5.847 20 C -0.146 4.146 21 C -0.149 4.149 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.073 0.927 26 H -0.001 1.001 27 H 0.257 0.743 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.337 0.663 39 H 0.338 0.662 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.981 -6.257 -10.963 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.228 5.228 3 C -0.021 4.021 4 C 0.056 3.944 5 C -0.499 4.499 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.529 5.529 9 Si 0.715 3.285 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.205 1.205 13 C -0.254 4.254 14 C -0.198 4.198 15 C -0.023 4.023 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.021 4.021 19 N -0.375 5.375 20 C -0.186 4.186 21 C -0.189 4.189 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.029 0.971 25 H 0.091 0.909 26 H 0.017 0.983 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.044 -6.996 -10.170 13.335 hybrid contribution 0.693 1.064 -0.312 1.307 sum -4.351 -5.933 -10.483 12.807 Atomic orbital electron populations 1.22432 0.89238 1.00388 1.00271 1.61997 1.06269 1.15282 1.39283 1.21646 0.98832 0.85882 0.95691 1.18806 0.92825 0.89457 0.93337 1.20213 0.95240 1.23160 1.11269 0.92451 1.24908 0.97127 0.94885 0.96429 1.69965 1.04311 1.39215 1.39364 0.86753 0.77620 0.80096 0.84031 1.20312 1.21644 1.20530 1.23044 0.91603 1.10932 0.99825 1.22518 0.99201 0.97696 1.00341 1.21746 0.99709 0.93115 0.87700 1.21576 1.00561 0.94663 0.97980 1.21520 1.00606 0.99324 0.93241 1.21505 0.99473 0.90141 0.91002 1.58999 1.15118 1.58166 1.05198 1.22320 1.00974 0.96942 0.98347 1.22216 1.00928 0.99712 0.96060 0.92582 0.90866 0.97117 0.90899 0.98265 0.93358 0.92237 0.90690 0.90095 0.92343 0.90459 0.92025 0.90728 0.92160 0.91459 0.90515 0.85109 0.84976 0.92813 0.92130 0.91972 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 8.46 60.06 0.51 0.94 16 2 N -0.51 -9.96 4.40 -234.89 -1.03 -10.99 16 3 C 0.11 2.37 4.12 -3.82 -0.02 2.35 16 4 C 0.06 1.38 1.17 -155.66 -0.18 1.20 16 5 C -0.46 -12.52 8.53 -34.44 -0.29 -12.81 16 6 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 7 C 0.07 1.86 5.40 -17.82 -0.10 1.77 16 8 N -0.89 -25.35 12.89 55.43 0.71 -24.64 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.22 -4.75 8.45 -26.69 -0.23 -4.97 16 14 C -0.16 -3.79 9.43 -26.69 -0.25 -4.04 16 15 C 0.09 1.42 2.20 -67.71 -0.15 1.27 16 16 C -0.11 -1.56 5.01 -26.73 -0.13 -1.69 16 17 C -0.11 -1.32 5.46 -26.73 -0.15 -1.46 16 18 C 0.09 1.01 3.25 -67.71 -0.22 0.79 16 19 N -0.85 -8.28 9.25 -4.67 -0.04 -8.32 16 20 C -0.15 -1.71 5.49 -26.71 -0.15 -1.86 16 21 C -0.15 -2.13 4.53 -26.71 -0.12 -2.25 16 22 H 0.06 0.87 6.09 -51.92 -0.32 0.55 16 23 H 0.07 1.38 6.38 -51.93 -0.33 1.05 16 24 H 0.01 0.17 6.51 -51.93 -0.34 -0.17 16 25 H 0.07 1.79 7.87 -51.93 -0.41 1.39 16 26 H 0.00 -0.01 7.15 -51.93 -0.37 -0.39 16 27 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 28 H 0.06 1.19 8.11 -51.93 -0.42 0.76 16 29 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 31 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.08 1.40 7.97 -51.93 -0.41 0.99 16 33 H 0.06 0.84 6.32 -51.93 -0.33 0.52 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.34 2.79 9.04 -39.29 -0.36 2.44 16 39 H 0.34 3.03 8.98 -39.29 -0.35 2.68 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.88 6.50 -51.93 -0.34 0.54 16 43 H 0.06 0.96 6.92 -51.93 -0.36 0.60 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -27.99 326.14 -9.63 -37.61 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.68 Total: 5.66 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -1.47 Total: -20.78 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.36 Total: -43.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.99 -9.63 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085869856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.754 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds