Wall clock time and date at job start Mon Mar 30 2020 04:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 110.99844 * 2 1 4 4 C 1.52999 * 109.47217 * 72.79920 * 3 2 1 5 5 C 1.50697 * 115.54683 * 55.05875 * 4 3 2 6 6 H 1.08003 * 120.00002 * 265.03019 * 5 4 3 7 7 C 1.37881 * 120.00448 * 85.02739 * 5 4 3 8 8 N 1.31518 * 119.99766 * 355.01035 * 7 5 4 9 9 Si 1.86800 * 120.00275 * 175.00926 * 7 5 4 10 10 H 1.48497 * 109.47081 * 60.00217 * 9 7 5 11 11 H 1.48500 * 109.46937 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46919 * 299.99752 * 9 7 5 13 13 C 1.52999 * 117.50058 * 269.38606 * 4 3 2 14 14 C 1.53000 * 117.49988 * 200.72154 * 4 3 2 15 15 C 1.46905 * 111.00032 * 236.04533 * 2 1 3 16 16 C 1.52996 * 109.47106 * 298.95085 * 15 2 1 17 17 C 1.53001 * 109.47096 * 180.02562 * 16 15 2 18 18 C 1.53005 * 109.46888 * 300.00152 * 17 16 15 19 19 N 1.46899 * 109.46736 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.46891 * 60.00202 * 18 17 16 21 21 C 1.52994 * 109.47029 * 58.95673 * 15 2 1 22 22 H 1.09009 * 109.47172 * 179.12501 * 1 2 3 23 23 H 1.08994 * 109.47547 * 299.12591 * 1 2 3 24 24 H 1.08998 * 109.47175 * 59.13016 * 1 2 3 25 25 H 1.08998 * 109.47298 * 192.80397 * 3 2 1 26 26 H 1.08999 * 109.46768 * 312.80092 * 3 2 1 27 27 H 0.96993 * 120.00052 * 185.15223 * 8 7 5 28 28 H 1.09001 * 117.49488 * 0.02562 * 13 4 3 29 29 H 1.09002 * 117.49721 * 145.01987 * 13 4 3 30 30 H 1.08994 * 117.50322 * 214.97894 * 14 4 3 31 31 H 1.09007 * 117.49651 * 359.97438 * 14 4 3 32 32 H 1.08999 * 109.46555 * 178.95417 * 15 2 1 33 33 H 1.08999 * 109.46717 * 60.00046 * 16 15 2 34 34 H 1.09003 * 109.47152 * 300.00265 * 16 15 2 35 35 H 1.08998 * 109.47098 * 59.99898 * 17 16 15 36 36 H 1.08997 * 109.47197 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47044 * 299.99780 * 18 17 16 38 38 H 1.00896 * 111.00142 * 180.02562 * 19 18 17 39 39 H 1.00905 * 110.99672 * 303.95251 * 19 18 17 40 40 H 1.09003 * 109.46667 * 179.97438 * 20 18 17 41 41 H 1.08998 * 109.47621 * 59.99932 * 20 18 17 42 42 H 1.08999 * 109.47243 * 299.99322 * 21 15 2 43 43 H 1.08998 * 109.47861 * 59.99996 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7799 2.0005 1.3780 5 6 2.3476 1.2282 2.5408 6 1 1.7195 0.5456 3.0940 7 6 3.6689 1.3930 2.8987 8 7 4.4591 2.1479 2.1670 9 14 4.3367 0.5440 4.4228 10 1 4.1852 -0.9260 4.2770 11 1 5.7738 0.8802 4.5870 12 1 3.5819 1.0036 5.6162 13 6 0.4764 2.7677 1.6083 14 6 1.7978 3.5277 1.4680 15 6 1.9954 -0.7660 -1.1376 16 6 1.5263 -2.2187 -1.0351 17 6 2.0752 -3.0166 -2.2196 18 6 1.5639 -2.4065 -3.5262 19 7 2.0903 -3.1730 -4.6634 20 6 2.0331 -0.9538 -3.6287 21 6 1.4837 -0.1557 -2.4439 22 1 -0.3634 -1.0276 -0.0157 23 1 -0.3634 0.5002 0.8976 24 1 -0.3633 0.5273 -0.8821 25 1 3.0611 1.3516 -0.2277 26 1 1.4737 1.9608 -0.7540 27 1 5.4048 2.2045 2.3750 28 1 -0.2278 2.8240 0.7783 29 1 0.0296 2.7142 2.6011 30 1 2.2197 3.9739 2.3685 31 1 1.9635 4.0844 0.5456 32 1 3.0849 -0.7342 -1.1239 33 1 0.4369 -2.2504 -1.0487 34 1 1.8909 -2.6534 -0.1044 35 1 3.1646 -2.9848 -2.2056 36 1 1.7406 -4.0514 -2.1468 37 1 0.4745 -2.4384 -3.5403 38 1 1.7671 -2.7893 -5.5388 39 1 3.0982 -3.2132 -4.6368 40 1 1.6692 -0.5193 -4.5598 41 1 3.1225 -0.9220 -3.6146 42 1 0.3943 -0.1875 -2.4576 43 1 1.8179 0.8792 -2.5170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085869856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:40 Heat of formation + Delta-G solvation = -1.631569 kcal Electronic energy + Delta-G solvation = -19839.213451 eV Core-core repulsion = 17111.528397 eV Total energy + Delta-G solvation = -2727.685054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.61878 -38.62072 -36.54795 -33.88163 -32.99940 -31.71873 -28.62660 -28.23092 -27.27236 -24.66896 -23.61977 -22.87925 -21.72372 -20.78626 -20.35303 -17.89408 -16.95143 -16.74021 -16.52069 -16.03177 -15.77017 -15.47009 -15.17955 -14.85978 -14.46288 -14.18485 -13.91388 -13.32765 -13.25221 -13.11102 -13.01663 -12.82031 -12.66447 -12.50131 -12.33074 -12.05085 -11.99437 -11.98385 -11.83982 -11.34090 -11.21660 -11.11298 -10.70358 -10.30037 -9.86644 -9.56132 -8.77985 -7.98801 -6.04662 1.44504 1.44915 1.51797 2.49932 3.14115 3.29972 3.59044 3.67872 3.72802 3.87945 4.14524 4.21096 4.33720 4.39779 4.46581 4.48528 4.51780 4.55688 4.68362 4.71049 4.75251 4.80811 4.86215 4.93044 4.99152 5.07807 5.10333 5.18249 5.20608 5.24105 5.28731 5.31552 5.44951 5.51679 5.65235 5.76372 5.90608 6.26240 6.40984 6.56857 6.63063 6.64509 6.97448 7.59425 9.09683 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.006194 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.386438 B = 4519.616786 C = 5059.113838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.530 5.530 3 C 0.126 3.874 4 C 0.030 3.970 5 C -0.468 4.468 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.916 5.916 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.275 1.275 13 C -0.187 4.187 14 C -0.168 4.168 15 C 0.087 3.913 16 C -0.101 4.101 17 C -0.103 4.103 18 C 0.099 3.901 19 N -0.847 5.847 20 C -0.138 4.138 21 C -0.140 4.140 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.025 0.975 25 H 0.037 0.963 26 H 0.009 0.991 27 H 0.255 0.745 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.348 0.652 39 H 0.343 0.657 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -7.370 -12.121 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.252 5.252 3 C -0.002 4.002 4 C 0.030 3.970 5 C -0.506 4.506 6 H 0.064 0.936 7 C -0.176 4.176 8 N -0.556 5.556 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.224 4.224 14 C -0.206 4.206 15 C -0.022 4.022 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.013 4.013 19 N -0.376 5.376 20 C -0.179 4.179 21 C -0.180 4.180 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.382 -8.119 -11.337 15.336 hybrid contribution 1.087 1.401 0.049 1.774 sum -5.295 -6.718 -11.289 14.163 Atomic orbital electron populations 1.22404 0.87610 1.01721 1.00093 1.61895 1.07855 1.13908 1.41540 1.21258 0.96890 0.87569 0.94492 1.18939 0.94845 0.89500 0.93750 1.20422 0.95295 1.22929 1.11988 0.93597 1.25531 0.97544 0.95745 0.98773 1.70075 1.04272 1.40517 1.40752 0.85881 0.76986 0.79133 0.81172 1.20101 1.21491 1.20054 1.22993 0.90837 1.07846 1.00725 1.22431 1.00934 0.97536 0.99732 1.21733 0.98185 0.94265 0.87987 1.21493 1.01118 0.93099 0.98266 1.21456 1.00275 0.99399 0.92986 1.21366 0.99536 0.89484 0.90922 1.58964 1.15630 1.57724 1.05299 1.22282 1.00569 0.97210 0.97804 1.22087 1.01282 0.98864 0.95792 0.90583 0.92438 0.95667 0.94465 0.97263 0.93645 0.89599 0.90770 0.92525 0.91351 0.93153 0.90931 0.92442 0.92631 0.90634 0.90216 0.83873 0.84396 0.91164 0.92698 0.91114 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 8.46 127.69 1.08 2.05 16 2 N -0.53 -20.69 4.40 -897.07 -3.94 -24.63 16 3 C 0.13 5.63 4.12 86.30 0.36 5.98 16 4 C 0.03 1.49 1.17 -52.93 -0.06 1.43 16 5 C -0.47 -25.77 8.53 25.60 0.22 -25.55 16 6 H 0.05 2.57 7.82 -2.91 -0.02 2.55 16 7 C 0.02 1.25 5.40 84.65 0.46 1.71 16 8 N -0.92 -53.42 12.89 21.45 0.28 -53.15 16 9 Si 0.94 44.80 29.54 68.60 2.03 46.83 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 C -0.19 -7.97 8.45 30.62 0.26 -7.71 16 14 C -0.17 -8.03 9.43 30.62 0.29 -7.74 16 15 C 0.09 2.83 2.20 44.91 0.10 2.93 16 16 C -0.10 -2.76 5.01 30.59 0.15 -2.60 16 17 C -0.10 -2.31 5.46 30.60 0.17 -2.14 16 18 C 0.10 1.94 3.25 44.92 0.15 2.09 16 19 N -0.85 -14.18 9.25 -168.68 -1.56 -15.74 16 20 C -0.14 -2.97 5.49 30.61 0.17 -2.80 16 21 C -0.14 -3.81 4.53 30.61 0.14 -3.67 16 22 H 0.08 2.17 6.09 -2.38 -0.01 2.16 16 23 H 0.06 2.07 6.38 -2.39 -0.02 2.05 16 24 H 0.02 0.75 6.51 -2.39 -0.02 0.74 16 25 H 0.04 1.90 7.87 -2.39 -0.02 1.88 16 26 H 0.01 0.39 7.15 -2.39 -0.02 0.38 16 27 H 0.25 14.36 8.32 -92.71 -0.77 13.59 16 28 H 0.09 3.21 8.11 -2.39 -0.02 3.19 16 29 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 32 H 0.05 1.89 7.97 -2.39 -0.02 1.87 16 33 H 0.07 1.81 6.32 -2.39 -0.02 1.80 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.35 4.69 9.04 -89.70 -0.81 3.88 16 39 H 0.34 5.31 8.98 -89.69 -0.81 4.51 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.81 6.50 -2.39 -0.02 1.79 16 43 H 0.04 1.34 6.92 -2.39 -0.02 1.32 16 Total: -1.00 -60.05 326.14 -0.36 -60.42 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.63 Total: 22.30 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.47 Total: -36.03 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -5.23 Total: -93.51 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -60.05 -0.36 -60.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085869856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.787 kcal (2) G-P(sol) polarization free energy of solvation -60.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds