Wall clock time and date at job start Mon Mar 30 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00105 * 2 1 4 4 C 1.52995 * 109.47395 * 162.84807 * 3 2 1 5 5 C 1.53119 * 109.52556 * 178.44606 * 4 3 2 6 6 C 1.53027 * 109.27999 * 177.56215 * 5 4 3 7 7 N 1.46851 * 109.52233 * 300.82006 * 6 5 4 8 8 C 1.46845 * 111.20088 * 61.74170 * 7 6 5 9 9 C 1.53032 * 109.52278 * 298.26301 * 8 7 6 10 10 C 1.46900 * 111.00058 * 236.04109 * 2 1 3 11 11 C 1.52995 * 109.47295 * 298.42873 * 10 2 1 12 12 C 1.50694 * 115.55164 * 306.30345 * 11 10 2 13 13 H 1.08006 * 119.99915 * 143.78339 * 12 11 10 14 14 C 1.37876 * 120.00002 * 323.78614 * 12 11 10 15 15 N 1.31508 * 120.00128 * 350.85946 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 170.86203 * 14 12 11 17 17 H 1.48494 * 109.47477 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47185 * 120.00178 * 16 14 12 19 19 H 1.48500 * 109.46820 * 239.99772 * 16 14 12 20 20 C 1.53004 * 117.49788 * 160.63451 * 11 10 2 21 21 C 1.53006 * 117.49606 * 91.97791 * 11 10 2 22 22 H 1.09001 * 109.46991 * 66.91757 * 1 2 3 23 23 H 1.09002 * 109.47145 * 186.91750 * 1 2 3 24 24 H 1.08995 * 109.47279 * 306.91709 * 1 2 3 25 25 H 1.09004 * 109.47219 * 42.84608 * 3 2 1 26 26 H 1.08998 * 109.46980 * 282.85215 * 3 2 1 27 27 H 1.09003 * 109.56923 * 58.28570 * 4 3 2 28 28 H 1.08997 * 109.49881 * 57.61335 * 5 4 3 29 29 H 1.09005 * 109.49766 * 297.50566 * 5 4 3 30 30 H 1.08999 * 109.46775 * 60.83435 * 6 5 4 31 31 H 1.09002 * 109.46576 * 180.81546 * 6 5 4 32 32 H 1.00904 * 111.00059 * 297.64494 * 7 6 5 33 33 H 1.09005 * 109.45909 * 58.27355 * 8 7 6 34 34 H 1.09001 * 109.46326 * 178.24332 * 8 7 6 35 35 H 1.09001 * 109.50669 * 179.11913 * 9 8 7 36 36 H 1.09009 * 109.50050 * 299.19380 * 9 8 7 37 37 H 1.09005 * 109.46896 * 58.43000 * 10 2 1 38 38 H 1.08999 * 109.47146 * 178.42853 * 10 2 1 39 39 H 0.97002 * 120.00460 * 184.69228 * 15 14 12 40 40 H 1.09001 * 117.49559 * 0.02562 * 20 11 10 41 41 H 1.09003 * 117.49955 * 145.02144 * 20 11 10 42 42 H 1.09003 * 117.49019 * 214.97822 * 21 11 10 43 43 H 1.08996 * 117.50070 * 359.97147 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4650 1.3536 0.4254 5 6 4.0257 2.7780 0.3884 6 6 5.4772 2.7623 0.8729 7 7 5.5324 2.2307 2.2406 8 6 5.0431 0.8471 2.2928 9 6 3.5786 0.8056 1.8506 10 6 1.9955 -0.7661 -1.1375 11 6 1.5372 -2.2217 -1.0280 12 6 1.8508 -2.9053 0.2778 13 1 1.1524 -3.6143 0.6975 14 6 3.0292 -2.6258 0.9368 15 7 3.9578 -1.9057 0.3464 16 14 3.3066 -3.2699 2.6681 17 1 2.1183 -4.0466 3.1037 18 1 4.5049 -4.1470 2.6839 19 1 3.5171 -2.1276 3.5934 20 6 1.5784 -3.0728 -2.2988 21 6 0.2347 -2.6071 -1.7324 22 1 -0.3633 0.4029 -0.9454 23 1 -0.3633 -1.0202 0.1238 24 1 -0.3633 0.6172 0.8216 25 1 1.4223 1.9807 0.6989 26 1 1.9123 1.7925 -1.0019 27 1 4.0344 0.7202 -0.2549 28 1 3.4318 3.4198 1.0390 29 1 3.9868 3.1579 -0.6325 30 1 6.0734 2.1312 0.2137 31 1 5.8749 3.7771 0.8615 32 1 5.0189 2.8201 2.8787 33 1 5.6412 0.2250 1.6269 34 1 5.1254 0.4709 3.3125 35 1 3.2202 -0.2235 1.8744 36 1 2.9775 1.4159 2.5248 37 1 1.6234 -0.3370 -2.0679 38 1 3.0847 -0.7265 -1.1292 39 1 4.8132 -1.7659 0.7819 40 1 1.9325 -2.5958 -3.2127 41 1 1.8320 -4.1273 -2.1902 42 1 -0.3951 -3.3555 -1.2513 43 1 -0.2958 -1.8236 -2.2733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086702819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:51 Heat of formation + Delta-G solvation = 26.657620 kcal Electronic energy + Delta-G solvation = -20596.278953 eV Core-core repulsion = 17869.820610 eV Total energy + Delta-G solvation = -2726.458343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.73443 -37.23909 -34.88618 -32.07317 -31.56963 -30.23828 -26.57926 -26.16885 -25.25205 -22.67795 -22.19748 -21.10609 -20.58949 -19.43987 -18.77485 -16.16795 -15.49206 -14.68787 -14.54616 -14.34262 -14.09165 -14.02795 -13.63581 -13.25620 -13.04198 -12.45179 -12.37010 -11.90921 -11.60943 -11.31021 -11.24797 -11.11232 -10.89637 -10.81237 -10.60321 -10.47269 -10.40106 -10.33423 -10.00217 -9.73343 -9.60495 -9.20773 -8.90746 -8.55493 -7.98788 -7.87372 -7.10793 -5.86307 -3.87485 3.34233 3.43374 3.47445 4.48987 4.68058 4.82317 5.13441 5.27408 5.46660 5.50892 5.66456 5.68939 5.84328 5.86594 5.98167 6.07129 6.12593 6.16557 6.20750 6.22238 6.27577 6.35007 6.44195 6.51137 6.58317 6.65417 6.72537 6.75485 6.75910 6.86758 6.98917 7.14838 7.16572 7.24576 7.37875 7.55850 7.65929 7.72843 8.07773 8.24127 8.29734 8.60466 9.04585 9.70827 11.14780 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.009912 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.856169 B = 2824.295670 C = 3708.128769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.500 5.500 3 C 0.067 3.933 4 C -0.071 4.071 5 C -0.154 4.154 6 C 0.061 3.939 7 N -0.690 5.690 8 C 0.056 3.944 9 C -0.137 4.137 10 C 0.103 3.897 11 C 0.069 3.931 12 C -0.475 4.475 13 H 0.052 0.948 14 C 0.094 3.906 15 N -0.866 5.866 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.279 1.279 20 C -0.207 4.207 21 C -0.220 4.220 22 H 0.001 0.999 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.052 0.948 26 H 0.013 0.987 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.331 0.669 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.034 0.966 37 H -0.020 1.020 38 H 0.119 0.881 39 H 0.256 0.744 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 8.230 0.499 8.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.222 5.222 3 C -0.062 4.062 4 C -0.090 4.090 5 C -0.194 4.194 6 C -0.069 4.069 7 N -0.318 5.318 8 C -0.074 4.074 9 C -0.176 4.176 10 C -0.024 4.024 11 C 0.068 3.932 12 C -0.512 4.512 13 H 0.070 0.930 14 C -0.109 4.109 15 N -0.503 5.503 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.205 1.205 20 C -0.246 4.246 21 C -0.257 4.257 22 H 0.019 0.981 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.053 0.947 37 H -0.002 1.002 38 H 0.137 0.863 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.840 7.938 0.959 8.040 hybrid contribution -1.328 0.171 -0.089 1.342 sum -0.488 8.109 0.870 8.171 Atomic orbital electron populations 1.22345 0.89561 1.02406 0.97312 1.61703 1.05387 1.10240 1.44916 1.22044 0.95839 0.90800 0.97529 1.21028 0.95453 0.94042 0.98482 1.22335 0.97774 0.98340 1.00905 1.21929 0.95134 0.99451 0.90341 1.60752 1.59541 1.04134 1.07379 1.22048 0.95299 0.89055 1.00950 1.22145 0.95770 1.04950 0.94743 1.21819 1.03140 0.91517 0.85909 1.18945 0.91669 0.91403 0.91169 1.20287 1.04223 1.23378 1.03284 0.92999 1.24640 0.95897 0.93857 0.96506 1.69801 1.04451 1.38713 1.37365 0.86803 0.77725 0.78641 0.86188 1.20260 1.21574 1.20515 1.22974 1.01046 1.00684 0.99908 1.22958 0.91712 1.03332 1.07692 0.98087 0.90335 0.93715 0.92947 0.96867 0.89324 0.92958 0.92425 0.91049 0.91806 0.85244 0.90484 0.92091 0.87343 0.94694 1.00223 0.86349 0.93275 0.92169 0.90534 0.90970 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 8.94 60.07 0.54 1.16 16 2 N -0.50 -10.42 3.69 -242.92 -0.90 -11.32 16 3 C 0.07 1.21 4.41 -3.83 -0.02 1.20 16 4 C -0.07 -1.25 2.26 -90.50 -0.20 -1.46 16 5 C -0.15 -2.23 5.36 -26.66 -0.14 -2.37 16 6 C 0.06 0.86 6.55 -3.84 -0.03 0.83 16 7 N -0.69 -10.28 6.87 -113.82 -0.78 -11.06 16 8 C 0.06 0.96 6.55 -3.84 -0.03 0.93 16 9 C -0.14 -2.54 4.98 -26.65 -0.13 -2.67 16 10 C 0.10 2.33 3.91 -3.83 -0.01 2.32 16 11 C 0.07 1.64 1.20 -155.66 -0.19 1.45 16 12 C -0.47 -12.36 8.71 -34.44 -0.30 -12.66 16 13 H 0.05 1.40 7.83 -52.48 -0.41 0.99 16 14 C 0.09 2.38 4.35 -17.82 -0.08 2.30 16 15 N -0.87 -21.47 9.21 55.43 0.51 -20.96 16 16 Si 0.88 20.43 29.02 -169.99 -4.93 15.50 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.21 -4.70 9.96 -26.69 -0.27 -4.96 16 21 C -0.22 -4.76 8.40 -26.69 -0.22 -4.98 16 22 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 23 H 0.08 1.63 6.36 -51.93 -0.33 1.30 16 24 H 0.04 0.77 7.92 -51.93 -0.41 0.36 16 25 H 0.05 0.90 7.83 -51.93 -0.41 0.50 16 26 H 0.01 0.24 8.04 -51.93 -0.42 -0.18 16 27 H 0.09 1.81 6.44 -51.93 -0.33 1.47 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.33 4.49 8.86 -39.29 -0.35 4.14 16 33 H 0.08 1.44 7.83 -51.93 -0.41 1.03 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 2.41 5.04 -51.93 -0.26 2.14 16 36 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 37 H -0.02 -0.45 8.08 -51.93 -0.42 -0.87 16 38 H 0.12 2.90 4.45 -51.93 -0.23 2.67 16 39 H 0.26 6.20 8.00 -40.82 -0.33 5.87 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -24.79 321.93 -10.08 -34.87 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.75 Total: 7.03 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.08 Total: -18.91 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -1.17 Total: -43.34 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.93 Total: 15.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -24.79 -10.08 -34.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.530 kcal (2) G-P(sol) polarization free energy of solvation -24.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds