Wall clock time and date at job start Mon Mar 30 2020 04:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00105 * 2 1 4 4 C 1.52995 * 109.47395 * 162.84807 * 3 2 1 5 5 C 1.53119 * 109.52556 * 178.44606 * 4 3 2 6 6 C 1.53027 * 109.27999 * 177.56215 * 5 4 3 7 7 N 1.46851 * 109.52233 * 300.82006 * 6 5 4 8 8 C 1.46845 * 111.20088 * 61.74170 * 7 6 5 9 9 C 1.53032 * 109.52278 * 298.26301 * 8 7 6 10 10 C 1.46900 * 111.00058 * 236.04109 * 2 1 3 11 11 C 1.52995 * 109.47295 * 298.42873 * 10 2 1 12 12 C 1.50694 * 115.55164 * 306.30345 * 11 10 2 13 13 H 1.08006 * 119.99915 * 143.78339 * 12 11 10 14 14 C 1.37876 * 120.00002 * 323.78614 * 12 11 10 15 15 N 1.31508 * 120.00128 * 350.85946 * 14 12 11 16 16 Si 1.86803 * 119.99882 * 170.86203 * 14 12 11 17 17 H 1.48494 * 109.47477 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47185 * 120.00178 * 16 14 12 19 19 H 1.48500 * 109.46820 * 239.99772 * 16 14 12 20 20 C 1.53004 * 117.49788 * 160.63451 * 11 10 2 21 21 C 1.53006 * 117.49606 * 91.97791 * 11 10 2 22 22 H 1.09001 * 109.46991 * 66.91757 * 1 2 3 23 23 H 1.09002 * 109.47145 * 186.91750 * 1 2 3 24 24 H 1.08995 * 109.47279 * 306.91709 * 1 2 3 25 25 H 1.09004 * 109.47219 * 42.84608 * 3 2 1 26 26 H 1.08998 * 109.46980 * 282.85215 * 3 2 1 27 27 H 1.09003 * 109.56923 * 58.28570 * 4 3 2 28 28 H 1.08997 * 109.49881 * 57.61335 * 5 4 3 29 29 H 1.09005 * 109.49766 * 297.50566 * 5 4 3 30 30 H 1.08999 * 109.46775 * 60.83435 * 6 5 4 31 31 H 1.09002 * 109.46576 * 180.81546 * 6 5 4 32 32 H 1.00904 * 111.00059 * 297.64494 * 7 6 5 33 33 H 1.09005 * 109.45909 * 58.27355 * 8 7 6 34 34 H 1.09001 * 109.46326 * 178.24332 * 8 7 6 35 35 H 1.09001 * 109.50669 * 179.11913 * 9 8 7 36 36 H 1.09009 * 109.50050 * 299.19380 * 9 8 7 37 37 H 1.09005 * 109.46896 * 58.43000 * 10 2 1 38 38 H 1.08999 * 109.47146 * 178.42853 * 10 2 1 39 39 H 0.97002 * 120.00460 * 184.69228 * 15 14 12 40 40 H 1.09001 * 117.49559 * 0.02562 * 20 11 10 41 41 H 1.09003 * 117.49955 * 145.02144 * 20 11 10 42 42 H 1.09003 * 117.49019 * 214.97822 * 21 11 10 43 43 H 1.08996 * 117.50070 * 359.97147 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.4650 1.3536 0.4254 5 6 4.0257 2.7780 0.3884 6 6 5.4772 2.7623 0.8729 7 7 5.5324 2.2307 2.2406 8 6 5.0431 0.8471 2.2928 9 6 3.5786 0.8056 1.8506 10 6 1.9955 -0.7661 -1.1375 11 6 1.5372 -2.2217 -1.0280 12 6 1.8508 -2.9053 0.2778 13 1 1.1524 -3.6143 0.6975 14 6 3.0292 -2.6258 0.9368 15 7 3.9578 -1.9057 0.3464 16 14 3.3066 -3.2699 2.6681 17 1 2.1183 -4.0466 3.1037 18 1 4.5049 -4.1470 2.6839 19 1 3.5171 -2.1276 3.5934 20 6 1.5784 -3.0728 -2.2988 21 6 0.2347 -2.6071 -1.7324 22 1 -0.3633 0.4029 -0.9454 23 1 -0.3633 -1.0202 0.1238 24 1 -0.3633 0.6172 0.8216 25 1 1.4223 1.9807 0.6989 26 1 1.9123 1.7925 -1.0019 27 1 4.0344 0.7202 -0.2549 28 1 3.4318 3.4198 1.0390 29 1 3.9868 3.1579 -0.6325 30 1 6.0734 2.1312 0.2137 31 1 5.8749 3.7771 0.8615 32 1 5.0189 2.8201 2.8787 33 1 5.6412 0.2250 1.6269 34 1 5.1254 0.4709 3.3125 35 1 3.2202 -0.2235 1.8744 36 1 2.9775 1.4159 2.5248 37 1 1.6234 -0.3370 -2.0679 38 1 3.0847 -0.7265 -1.1292 39 1 4.8132 -1.7659 0.7819 40 1 1.9325 -2.5958 -3.2127 41 1 1.8320 -4.1273 -2.1902 42 1 -0.3951 -3.3555 -1.2513 43 1 -0.2958 -1.8236 -2.2733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086702819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:51 Heat of formation + Delta-G solvation = 12.753771 kcal Electronic energy + Delta-G solvation = -20596.881869 eV Core-core repulsion = 17869.820610 eV Total energy + Delta-G solvation = -2727.061259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15343 -38.85667 -36.49713 -34.00154 -32.95824 -31.54194 -28.25664 -27.66177 -27.14552 -24.07135 -23.55288 -22.88658 -22.02512 -20.90156 -20.56141 -17.98595 -16.85791 -16.56711 -16.07652 -15.85548 -15.68873 -15.41553 -15.06130 -14.84457 -14.62990 -14.04064 -13.85950 -13.30923 -13.09950 -13.03325 -12.94352 -12.68081 -12.51080 -12.34989 -12.24869 -12.19194 -11.99459 -11.91179 -11.68140 -11.20084 -11.02160 -11.00081 -10.80156 -10.38289 -9.79495 -9.18765 -8.69767 -7.80291 -5.86595 1.45036 1.51864 1.56747 2.56053 3.15618 3.41837 3.51473 3.79112 3.90066 4.16610 4.25200 4.37348 4.38226 4.43973 4.56926 4.58256 4.60946 4.68667 4.71323 4.80210 4.83543 4.89811 4.95090 5.00249 5.03163 5.12815 5.16287 5.18736 5.22990 5.24543 5.38859 5.47823 5.57764 5.66769 5.75875 5.80566 6.15234 6.21032 6.51251 6.59455 6.68566 6.76475 7.07218 7.72224 9.17686 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.009912 C = 0.007549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.856169 B = 2824.295670 C = 3708.128769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.517 5.517 3 C 0.068 3.932 4 C -0.065 4.065 5 C -0.144 4.144 6 C 0.063 3.937 7 N -0.687 5.687 8 C 0.065 3.935 9 C -0.131 4.131 10 C 0.118 3.882 11 C 0.048 3.952 12 C -0.498 4.498 13 H 0.032 0.968 14 C 0.074 3.926 15 N -0.863 5.863 16 Si 0.916 3.084 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.274 1.274 20 C -0.211 4.211 21 C -0.199 4.199 22 H 0.011 0.989 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.017 0.983 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.343 0.657 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.042 0.958 37 H -0.021 1.021 38 H 0.097 0.903 39 H 0.256 0.744 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 10.188 0.725 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.239 5.239 3 C -0.060 4.060 4 C -0.084 4.084 5 C -0.184 4.184 6 C -0.067 4.067 7 N -0.316 5.316 8 C -0.065 4.065 9 C -0.170 4.170 10 C -0.010 4.010 11 C 0.047 3.953 12 C -0.535 4.535 13 H 0.050 0.950 14 C -0.129 4.129 15 N -0.500 5.500 16 Si 0.745 3.255 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.199 1.199 20 C -0.250 4.250 21 C -0.236 4.236 22 H 0.029 0.971 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.161 0.839 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.060 0.940 37 H -0.003 1.003 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.750 9.910 1.184 10.009 hybrid contribution -1.298 -0.445 -0.156 1.381 sum -0.548 9.465 1.027 9.537 Atomic orbital electron populations 1.22285 0.88645 1.01696 0.98565 1.61634 1.06368 1.11700 1.44215 1.22093 0.96223 0.89553 0.98139 1.20920 0.94896 0.95604 0.96990 1.22250 0.97961 0.96126 1.02031 1.21973 0.94751 1.00576 0.89376 1.60708 1.59425 1.03096 1.08328 1.21846 0.94151 0.90340 1.00166 1.22017 0.96518 1.02860 0.95618 1.21522 1.01792 0.91125 0.86543 1.19016 0.93528 0.92113 0.90659 1.20320 1.04340 1.24033 1.04783 0.95020 1.24946 0.95778 0.94101 0.98105 1.69871 1.04278 1.38246 1.37586 0.86223 0.76944 0.78154 0.84211 1.21182 1.21731 1.19930 1.22976 1.01954 1.00127 0.99919 1.22896 0.91028 1.03201 1.06515 0.97103 0.92263 0.91846 0.91461 0.96455 0.92456 0.91489 0.91342 0.92425 0.88990 0.83905 0.92562 0.92254 0.90974 0.93974 1.00298 0.88472 0.93317 0.91085 0.91441 0.91134 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 8.94 127.69 1.14 2.49 16 2 N -0.52 -21.10 3.69 -922.46 -3.41 -24.50 16 3 C 0.07 2.36 4.41 86.30 0.38 2.75 16 4 C -0.07 -2.21 2.26 -10.72 -0.02 -2.24 16 5 C -0.14 -3.77 5.36 30.64 0.16 -3.60 16 6 C 0.06 1.59 6.55 86.32 0.57 2.16 16 7 N -0.69 -18.92 6.87 -514.02 -3.53 -22.45 16 8 C 0.06 2.17 6.55 86.32 0.57 2.73 16 9 C -0.13 -4.72 4.98 30.64 0.15 -4.57 16 10 C 0.12 5.30 3.91 86.30 0.34 5.64 16 11 C 0.05 2.27 1.20 -52.93 -0.06 2.21 16 12 C -0.50 -26.32 8.71 25.60 0.22 -26.10 16 13 H 0.03 1.76 7.83 -2.91 -0.02 1.73 16 14 C 0.07 3.79 4.35 84.66 0.37 4.16 16 15 N -0.86 -43.37 9.21 21.45 0.20 -43.17 16 16 Si 0.92 42.34 29.02 68.60 1.99 44.33 16 17 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 C -0.21 -9.51 9.96 30.62 0.30 -9.21 16 21 C -0.20 -8.49 8.40 30.62 0.26 -8.23 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.06 2.41 6.36 -2.39 -0.02 2.39 16 24 H 0.06 2.07 7.92 -2.39 -0.02 2.05 16 25 H 0.07 2.13 7.83 -2.39 -0.02 2.11 16 26 H 0.02 0.59 8.04 -2.39 -0.02 0.57 16 27 H 0.06 2.34 6.44 -2.39 -0.02 2.32 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.34 8.25 8.86 -89.69 -0.79 7.46 16 33 H 0.06 2.11 7.83 -2.38 -0.02 2.09 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 3.18 5.04 -2.39 -0.01 3.17 16 36 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 37 H -0.02 -0.92 8.08 -2.38 -0.02 -0.94 16 38 H 0.10 4.81 4.45 -2.39 -0.01 4.80 16 39 H 0.26 12.58 8.00 -92.71 -0.74 11.84 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -52.53 321.93 -0.17 -52.71 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.20 Total: 24.89 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 4.37 Total: -31.81 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -6.74 Total: -90.12 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.99 Total: 44.33 kcal Total: -52.53 -0.17 -52.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086702819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.463 kcal (2) G-P(sol) polarization free energy of solvation -52.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds