Wall clock time and date at job start Mon Mar 30 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00142 * 2 1 4 4 C 1.53002 * 109.46858 * 70.46969 * 3 2 1 5 5 C 1.50698 * 115.55160 * 58.22444 * 4 3 2 6 6 H 1.08000 * 119.99629 * 244.25931 * 5 4 3 7 7 C 1.37875 * 120.00451 * 64.25200 * 5 4 3 8 8 N 1.31514 * 120.00193 * 212.23262 * 7 5 4 9 9 Si 1.86807 * 119.99511 * 32.23622 * 7 5 4 10 10 H 1.48498 * 109.46822 * 305.13760 * 9 7 5 11 11 H 1.48497 * 109.46953 * 65.14271 * 9 7 5 12 12 H 1.48499 * 109.46850 * 185.14343 * 9 7 5 13 13 C 1.53003 * 117.49966 * 203.89151 * 4 3 2 14 14 C 1.52998 * 117.50018 * 272.54851 * 4 3 2 15 15 C 1.46910 * 110.99500 * 236.05066 * 2 1 3 16 16 C 1.53116 * 109.52067 * 57.61989 * 15 2 1 17 17 C 1.53047 * 109.27131 * 182.50277 * 16 15 2 18 18 N 1.46851 * 109.57394 * 59.08458 * 17 16 15 19 19 C 1.46906 * 110.99695 * 174.19188 * 18 17 16 20 20 C 1.46847 * 111.19670 * 298.28604 * 18 17 16 21 21 C 1.53043 * 109.52124 * 61.74608 * 20 18 17 22 22 H 1.08996 * 109.47537 * 62.77201 * 1 2 3 23 23 H 1.08995 * 109.47499 * 182.78392 * 1 2 3 24 24 H 1.09011 * 109.46543 * 302.77545 * 1 2 3 25 25 H 1.09003 * 109.47638 * 310.46873 * 3 2 1 26 26 H 1.09004 * 109.47337 * 190.46660 * 3 2 1 27 27 H 0.96998 * 119.99672 * 180.02562 * 8 7 5 28 28 H 1.08998 * 117.49816 * 215.00560 * 13 4 3 29 29 H 1.08997 * 117.49655 * 0.02562 * 13 4 3 30 30 H 1.09003 * 117.49444 * 359.97438 * 14 4 3 31 31 H 1.09003 * 117.49725 * 144.96791 * 14 4 3 32 32 H 1.09004 * 109.51806 * 177.74352 * 15 2 1 33 33 H 1.09006 * 109.50254 * 302.37479 * 16 15 2 34 34 H 1.08995 * 109.50376 * 62.49831 * 16 15 2 35 35 H 1.09001 * 109.41142 * 299.06633 * 17 16 15 36 36 H 1.08998 * 109.45344 * 179.12291 * 17 16 15 37 37 H 1.08996 * 109.46804 * 184.20529 * 19 18 17 38 38 H 1.08998 * 109.47169 * 304.20728 * 19 18 17 39 39 H 1.09000 * 109.46878 * 64.20772 * 19 18 17 40 40 H 1.09003 * 109.46695 * 301.73071 * 20 18 17 41 41 H 1.09000 * 109.45925 * 181.76199 * 20 18 17 42 42 H 1.08999 * 109.49887 * 180.87895 * 21 20 18 43 43 H 1.08998 * 109.50141 * 60.76441 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7280 2.0203 1.3595 5 6 2.3149 1.3039 2.5484 6 1 1.6640 0.8786 3.2979 7 6 3.6828 1.1914 2.6792 8 7 4.2031 0.1313 3.2580 9 14 4.7971 2.5451 2.0345 10 1 4.5004 2.7891 0.6001 11 1 4.5613 3.7907 2.8078 12 1 6.2155 2.1312 2.1830 13 6 1.6692 3.5482 1.4138 14 6 0.3850 2.7271 1.5530 15 6 1.9954 -0.7660 -1.1378 16 6 1.4571 -0.1764 -2.4443 17 6 1.9584 -1.0160 -3.6217 18 7 1.5044 -2.4037 -3.4648 19 6 1.8502 -3.2073 -4.6450 20 6 2.0486 -3.0052 -2.2407 21 6 1.5488 -2.2260 -1.0220 22 1 -0.3634 0.4702 -0.9137 23 1 -0.3634 -1.0264 0.0499 24 1 -0.3633 0.5564 0.8642 25 1 1.5030 1.9497 -0.7818 26 1 3.0691 1.3484 -0.1867 27 1 5.1655 0.0524 3.3503 28 1 2.0551 4.0352 2.3093 29 1 1.8207 4.0911 0.4808 30 1 -0.3079 2.7302 0.7115 31 1 -0.0744 2.6735 2.5401 32 1 3.0843 -0.7169 -1.1373 33 1 0.3673 -0.1889 -2.4275 34 1 1.8082 0.8498 -2.5524 35 1 3.0478 -0.9909 -3.6467 36 1 1.5641 -0.6080 -4.5524 37 1 1.4378 -4.2102 -4.5351 38 1 1.4350 -2.7394 -5.5375 39 1 2.9345 -3.2685 -4.7378 40 1 3.1377 -2.9708 -2.2721 41 1 1.7202 -4.0421 -2.1685 42 1 1.9654 -2.6632 -0.1147 43 1 0.4605 -2.2717 -0.9822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:53 Heat of formation + Delta-G solvation = 43.907315 kcal Electronic energy + Delta-G solvation = -20005.150798 eV Core-core repulsion = 17279.440458 eV Total energy + Delta-G solvation = -2725.710340 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.40985 -37.38312 -35.35728 -32.03498 -31.35030 -30.70923 -27.19364 -26.40735 -25.29563 -23.66718 -22.89604 -21.43750 -21.15257 -18.97573 -18.76449 -16.17349 -15.90376 -15.12692 -14.93901 -14.82242 -14.54987 -14.01115 -13.79621 -13.26410 -13.14611 -13.03274 -12.55924 -12.34785 -12.26209 -11.94021 -11.57934 -11.52065 -11.17763 -10.96886 -10.89924 -10.74844 -10.39072 -10.34667 -10.29593 -10.13204 -9.92139 -9.45423 -9.11396 -8.45993 -8.33300 -7.97477 -7.29441 -6.07251 -3.83046 3.38457 3.46234 3.51522 3.95380 4.50187 4.56492 4.97471 4.99406 5.07218 5.17701 5.27589 5.32219 5.41908 5.45513 5.58403 5.71260 5.75236 5.79221 5.86637 5.88490 5.91976 5.99473 6.07169 6.13088 6.23457 6.25240 6.31628 6.36801 6.51644 6.55019 6.64816 6.70153 6.77018 6.84984 7.07460 7.11542 7.19315 7.24423 7.86699 7.97180 8.06828 8.66035 9.10263 9.69716 11.05258 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.006630 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.700055 B = 4222.143391 C = 4562.923842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.499 5.499 3 C 0.100 3.900 4 C 0.025 3.975 5 C -0.479 4.479 6 H 0.071 0.929 7 C 0.096 3.904 8 N -0.865 5.865 9 Si 0.850 3.150 10 H -0.269 1.269 11 H -0.276 1.276 12 H -0.297 1.297 13 C -0.213 4.213 14 C -0.186 4.186 15 C 0.086 3.914 16 C -0.153 4.153 17 C 0.062 3.938 18 N -0.544 5.544 19 C 0.026 3.974 20 C 0.057 3.943 21 C -0.107 4.107 22 H 0.012 0.988 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.007 0.993 26 H 0.063 0.937 27 H 0.260 0.740 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 -3.499 -13.441 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.220 5.220 3 C -0.028 4.028 4 C 0.024 3.976 5 C -0.515 4.515 6 H 0.089 0.911 7 C -0.108 4.108 8 N -0.499 5.499 9 Si 0.677 3.323 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.224 1.224 13 C -0.251 4.251 14 C -0.223 4.223 15 C -0.024 4.024 16 C -0.192 4.192 17 C -0.067 4.067 18 N -0.269 5.269 19 C -0.123 4.123 20 C -0.071 4.071 21 C -0.145 4.145 22 H 0.031 0.969 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.025 0.975 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.813 -3.846 -12.863 14.263 hybrid contribution 1.391 1.265 -1.204 2.233 sum -3.421 -2.581 -14.067 14.706 Atomic orbital electron populations 1.22462 0.88705 1.01154 0.99966 1.61907 1.06690 1.14138 1.39268 1.21773 0.98550 0.87201 0.95290 1.19313 0.95222 0.88409 0.94682 1.19854 0.91147 1.34874 1.05617 0.91106 1.24717 0.97716 0.94109 0.94282 1.70238 1.11918 1.24241 1.43524 0.87371 0.79508 0.85068 0.80346 1.19391 1.20181 1.22355 1.23122 1.03492 0.97854 1.00644 1.22771 0.91007 1.07950 1.00580 1.21764 0.99247 0.93622 0.87723 1.22356 1.02258 0.98760 0.95875 1.22010 0.97400 0.88500 0.98741 1.61954 1.60036 1.02281 1.02625 1.22330 0.98448 0.98276 0.93199 1.22125 0.96956 0.98311 0.89707 1.21634 1.01744 0.94387 0.96751 0.96948 0.92286 0.90636 0.97534 0.91871 0.92990 0.89730 0.91726 0.91390 0.89973 0.90883 0.90786 0.91802 0.95112 0.91354 0.91501 0.91714 0.95926 0.94947 0.90864 0.90205 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.42 60.06 0.51 0.95 16 2 N -0.50 -10.03 4.48 -234.73 -1.05 -11.08 16 3 C 0.10 2.14 4.04 -3.83 -0.02 2.12 16 4 C 0.03 0.59 0.71 -155.66 -0.11 0.48 16 5 C -0.48 -13.25 8.96 -34.44 -0.31 -13.56 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.73 16 7 C 0.10 2.73 5.34 -17.82 -0.10 2.64 16 8 N -0.86 -25.87 13.96 55.43 0.77 -25.10 16 9 Si 0.85 21.39 25.86 -169.99 -4.40 16.99 16 10 H -0.27 -6.53 6.50 56.52 0.37 -6.16 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 C -0.21 -4.58 8.29 -26.69 -0.22 -4.80 16 14 C -0.19 -3.80 8.18 -26.70 -0.22 -4.02 16 15 C 0.09 1.47 2.27 -67.59 -0.15 1.32 16 16 C -0.15 -2.26 4.70 -26.65 -0.13 -2.39 16 17 C 0.06 0.80 5.46 -3.83 -0.02 0.78 16 18 N -0.54 -6.93 4.91 -242.94 -1.19 -8.12 16 19 C 0.03 0.26 9.59 60.07 0.58 0.84 16 20 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 21 C -0.11 -1.65 5.27 -26.65 -0.14 -1.79 16 22 H 0.01 0.20 6.28 -51.93 -0.33 -0.13 16 23 H 0.06 0.97 6.25 -51.93 -0.32 0.65 16 24 H 0.07 1.43 5.78 -51.92 -0.30 1.13 16 25 H 0.01 0.13 7.19 -51.93 -0.37 -0.24 16 26 H 0.06 1.46 6.43 -51.93 -0.33 1.13 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.08 1.88 7.83 -51.93 -0.41 1.48 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 32 H 0.07 1.37 7.97 -51.93 -0.41 0.95 16 33 H 0.07 1.11 6.27 -51.93 -0.33 0.79 16 34 H 0.06 0.97 7.03 -51.93 -0.37 0.60 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.08 6.31 -51.93 -0.33 0.76 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -29.09 319.45 -9.12 -38.21 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.72 Total: 0.98 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.35 Total: -16.70 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -1.47 Total: -44.30 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.40 Total: 16.99 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.09 -9.12 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.115 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds