Wall clock time and date at job start Mon Mar 30 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00142 * 2 1 4 4 C 1.53002 * 109.46858 * 70.46969 * 3 2 1 5 5 C 1.50698 * 115.55160 * 58.22444 * 4 3 2 6 6 H 1.08000 * 119.99629 * 244.25931 * 5 4 3 7 7 C 1.37875 * 120.00451 * 64.25200 * 5 4 3 8 8 N 1.31514 * 120.00193 * 212.23262 * 7 5 4 9 9 Si 1.86807 * 119.99511 * 32.23622 * 7 5 4 10 10 H 1.48498 * 109.46822 * 305.13760 * 9 7 5 11 11 H 1.48497 * 109.46953 * 65.14271 * 9 7 5 12 12 H 1.48499 * 109.46850 * 185.14343 * 9 7 5 13 13 C 1.53003 * 117.49966 * 203.89151 * 4 3 2 14 14 C 1.52998 * 117.50018 * 272.54851 * 4 3 2 15 15 C 1.46910 * 110.99500 * 236.05066 * 2 1 3 16 16 C 1.53116 * 109.52067 * 57.61989 * 15 2 1 17 17 C 1.53047 * 109.27131 * 182.50277 * 16 15 2 18 18 N 1.46851 * 109.57394 * 59.08458 * 17 16 15 19 19 C 1.46906 * 110.99695 * 174.19188 * 18 17 16 20 20 C 1.46847 * 111.19670 * 298.28604 * 18 17 16 21 21 C 1.53043 * 109.52124 * 61.74608 * 20 18 17 22 22 H 1.08996 * 109.47537 * 62.77201 * 1 2 3 23 23 H 1.08995 * 109.47499 * 182.78392 * 1 2 3 24 24 H 1.09011 * 109.46543 * 302.77545 * 1 2 3 25 25 H 1.09003 * 109.47638 * 310.46873 * 3 2 1 26 26 H 1.09004 * 109.47337 * 190.46660 * 3 2 1 27 27 H 0.96998 * 119.99672 * 180.02562 * 8 7 5 28 28 H 1.08998 * 117.49816 * 215.00560 * 13 4 3 29 29 H 1.08997 * 117.49655 * 0.02562 * 13 4 3 30 30 H 1.09003 * 117.49444 * 359.97438 * 14 4 3 31 31 H 1.09003 * 117.49725 * 144.96791 * 14 4 3 32 32 H 1.09004 * 109.51806 * 177.74352 * 15 2 1 33 33 H 1.09006 * 109.50254 * 302.37479 * 16 15 2 34 34 H 1.08995 * 109.50376 * 62.49831 * 16 15 2 35 35 H 1.09001 * 109.41142 * 299.06633 * 17 16 15 36 36 H 1.08998 * 109.45344 * 179.12291 * 17 16 15 37 37 H 1.08996 * 109.46804 * 184.20529 * 19 18 17 38 38 H 1.08998 * 109.47169 * 304.20728 * 19 18 17 39 39 H 1.09000 * 109.46878 * 64.20772 * 19 18 17 40 40 H 1.09003 * 109.46695 * 301.73071 * 20 18 17 41 41 H 1.09000 * 109.45925 * 181.76199 * 20 18 17 42 42 H 1.08999 * 109.49887 * 180.87895 * 21 20 18 43 43 H 1.08998 * 109.50141 * 60.76441 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7280 2.0203 1.3595 5 6 2.3149 1.3039 2.5484 6 1 1.6640 0.8786 3.2979 7 6 3.6828 1.1914 2.6792 8 7 4.2031 0.1313 3.2580 9 14 4.7971 2.5451 2.0345 10 1 4.5004 2.7891 0.6001 11 1 4.5613 3.7907 2.8078 12 1 6.2155 2.1312 2.1830 13 6 1.6692 3.5482 1.4138 14 6 0.3850 2.7271 1.5530 15 6 1.9954 -0.7660 -1.1378 16 6 1.4571 -0.1764 -2.4443 17 6 1.9584 -1.0160 -3.6217 18 7 1.5044 -2.4037 -3.4648 19 6 1.8502 -3.2073 -4.6450 20 6 2.0486 -3.0052 -2.2407 21 6 1.5488 -2.2260 -1.0220 22 1 -0.3634 0.4702 -0.9137 23 1 -0.3634 -1.0264 0.0499 24 1 -0.3633 0.5564 0.8642 25 1 1.5030 1.9497 -0.7818 26 1 3.0691 1.3484 -0.1867 27 1 5.1655 0.0524 3.3503 28 1 2.0551 4.0352 2.3093 29 1 1.8207 4.0911 0.4808 30 1 -0.3079 2.7302 0.7115 31 1 -0.0744 2.6735 2.5401 32 1 3.0843 -0.7169 -1.1373 33 1 0.3673 -0.1889 -2.4275 34 1 1.8082 0.8498 -2.5524 35 1 3.0478 -0.9909 -3.6467 36 1 1.5641 -0.6080 -4.5524 37 1 1.4378 -4.2102 -4.5351 38 1 1.4350 -2.7394 -5.5375 39 1 2.9345 -3.2685 -4.7378 40 1 3.1377 -2.9708 -2.2721 41 1 1.7202 -4.0421 -2.1685 42 1 1.9654 -2.6632 -0.1147 43 1 0.4605 -2.2717 -0.9822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:53 Heat of formation + Delta-G solvation = 24.200194 kcal Electronic energy + Delta-G solvation = -20006.005363 eV Core-core repulsion = 17279.440458 eV Total energy + Delta-G solvation = -2726.564905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68279 -38.88958 -36.78510 -34.19117 -32.58966 -31.82567 -28.81915 -27.60652 -27.18188 -24.94153 -24.06240 -23.11860 -22.37762 -20.70143 -20.22027 -18.14463 -17.12601 -16.70179 -16.28898 -16.17014 -15.70395 -15.56775 -15.29158 -14.71726 -14.68767 -14.40598 -14.30457 -13.54026 -13.40682 -13.29672 -13.13322 -12.95712 -12.63392 -12.47194 -12.38485 -12.12897 -12.07749 -11.90300 -11.85012 -11.54165 -11.40361 -11.33259 -10.88280 -10.27789 -10.05272 -9.30652 -8.76392 -8.26448 -6.04037 1.37278 1.41454 1.48422 2.45272 2.89273 2.99606 3.16305 3.51215 3.84204 3.89983 4.09650 4.19704 4.24484 4.35244 4.36206 4.47542 4.51708 4.57573 4.58341 4.61203 4.62759 4.73734 4.75706 4.82161 4.87565 4.90769 4.99114 5.02529 5.06011 5.08232 5.13356 5.20928 5.33955 5.41890 5.48844 5.54546 5.85552 6.09463 6.13735 6.40009 6.51891 6.56439 6.89980 7.50093 8.90179 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025226 B = 0.006630 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.700055 B = 4222.143391 C = 4562.923842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.531 5.531 3 C 0.111 3.889 4 C -0.005 4.005 5 C -0.477 4.477 6 H 0.024 0.976 7 C 0.047 3.953 8 N -0.914 5.914 9 Si 0.908 3.092 10 H -0.251 1.251 11 H -0.269 1.269 12 H -0.300 1.300 13 C -0.205 4.205 14 C -0.165 4.165 15 C 0.086 3.914 16 C -0.142 4.142 17 C 0.065 3.935 18 N -0.551 5.551 19 C 0.025 3.975 20 C 0.063 3.937 21 C -0.101 4.101 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.260 0.740 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 -2.546 -16.252 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.253 5.253 3 C -0.017 4.017 4 C -0.007 4.007 5 C -0.513 4.513 6 H 0.042 0.958 7 C -0.153 4.153 8 N -0.552 5.552 9 Si 0.733 3.267 10 H -0.175 1.175 11 H -0.194 1.194 12 H -0.227 1.227 13 C -0.243 4.243 14 C -0.202 4.202 15 C -0.023 4.023 16 C -0.181 4.181 17 C -0.064 4.064 18 N -0.276 5.276 19 C -0.122 4.122 20 C -0.065 4.065 21 C -0.139 4.139 22 H 0.051 0.949 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.753 -2.879 -15.695 16.962 hybrid contribution 1.603 0.895 -0.270 1.855 sum -4.151 -1.984 -15.965 16.615 Atomic orbital electron populations 1.22394 0.87315 1.01704 1.00182 1.61822 1.08175 1.13800 1.41514 1.21535 0.97427 0.88212 0.94529 1.19260 0.97882 0.89564 0.93947 1.19964 0.90686 1.34524 1.06161 0.95772 1.25400 0.99191 0.95664 0.95052 1.70340 1.12140 1.26263 1.46411 0.86414 0.77311 0.82146 0.80804 1.17480 1.19392 1.22686 1.23122 1.03558 0.96117 1.01467 1.22784 0.90501 1.05466 1.01405 1.21741 0.97827 0.94390 0.88347 1.22214 1.02104 0.98774 0.95032 1.21994 0.97163 0.88595 0.98635 1.61963 1.60049 1.02442 1.03187 1.22405 0.98770 0.98585 0.92464 1.22039 0.96508 0.98770 0.89182 1.21548 1.01709 0.93562 0.97112 0.94881 0.91510 0.92157 0.95216 0.94208 0.93063 0.90800 0.89061 0.88444 0.90693 0.93348 0.90537 0.92033 0.95597 0.89311 0.90395 0.90313 0.95766 0.95605 0.89209 0.92502 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 8.42 127.69 1.07 2.16 16 2 N -0.53 -21.20 4.48 -896.56 -4.02 -25.21 16 3 C 0.11 4.63 4.04 86.30 0.35 4.98 16 4 C -0.01 -0.23 0.71 -52.93 -0.04 -0.27 16 5 C -0.48 -27.10 8.96 25.60 0.23 -26.87 16 6 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 7 C 0.05 2.75 5.34 84.65 0.45 3.20 16 8 N -0.91 -56.91 13.96 21.45 0.30 -56.61 16 9 Si 0.91 44.47 25.86 68.60 1.77 46.24 16 10 H -0.25 -11.48 6.50 99.48 0.65 -10.83 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 13 C -0.20 -8.28 8.29 30.62 0.25 -8.03 16 14 C -0.16 -6.39 8.18 30.62 0.25 -6.14 16 15 C 0.09 2.91 2.27 44.99 0.10 3.02 16 16 C -0.14 -3.89 4.70 30.65 0.14 -3.75 16 17 C 0.06 1.51 5.46 86.33 0.47 1.98 16 18 N -0.55 -12.61 4.91 -922.53 -4.53 -17.14 16 19 C 0.03 0.44 9.59 127.69 1.22 1.66 16 20 C 0.06 1.58 5.46 86.33 0.47 2.05 16 21 C -0.10 -3.08 5.27 30.65 0.16 -2.92 16 22 H 0.03 0.98 6.28 -2.39 -0.01 0.97 16 23 H 0.07 2.13 6.25 -2.39 -0.01 2.12 16 24 H 0.06 2.22 5.78 -2.38 -0.01 2.20 16 25 H 0.03 1.10 7.19 -2.39 -0.02 1.08 16 26 H 0.04 1.81 6.43 -2.39 -0.02 1.80 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.07 3.14 7.83 -2.39 -0.02 3.12 16 29 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.10 3.22 7.83 -2.39 -0.02 3.20 16 31 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.05 1.85 7.97 -2.39 -0.02 1.83 16 33 H 0.08 2.07 6.27 -2.38 -0.01 2.06 16 34 H 0.06 1.71 7.03 -2.39 -0.02 1.69 16 35 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 39 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 42 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 2.19 6.31 -2.39 -0.02 2.18 16 Total: -1.00 -64.07 319.45 -0.43 -64.50 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.89 Total: 17.16 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 5.15 Total: -28.94 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -8.25 Total: -98.97 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.77 Total: 46.24 kcal Total: -64.07 -0.43 -64.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.700 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds