Wall clock time and date at job start Mon Mar 30 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00245 * 2 1 4 4 C 1.46905 * 110.99723 * 123.94935 * 2 1 3 5 5 C 1.53118 * 109.52116 * 174.99970 * 4 2 1 6 6 C 1.53042 * 109.27828 * 177.62587 * 5 4 2 7 7 N 1.46850 * 109.52222 * 300.81996 * 6 5 4 8 8 C 1.46891 * 111.00071 * 185.83809 * 7 6 5 9 9 C 1.53002 * 109.47327 * 171.53745 * 8 7 6 10 10 C 1.50691 * 115.55028 * 305.82296 * 9 8 7 11 11 H 1.07994 * 120.00523 * 144.62319 * 10 9 8 12 12 C 1.37886 * 120.00083 * 324.62397 * 10 9 8 13 13 N 1.31516 * 119.99575 * 351.00089 * 12 10 9 14 14 Si 1.86796 * 120.00236 * 171.00649 * 12 10 9 15 15 H 1.48493 * 109.47425 * 89.99776 * 14 12 10 16 16 H 1.48499 * 109.46911 * 210.00166 * 14 12 10 17 17 H 1.48504 * 109.46795 * 329.99506 * 14 12 10 18 18 C 1.52997 * 117.50044 * 160.14843 * 9 8 7 19 19 C 1.53004 * 117.49698 * 91.49161 * 9 8 7 20 20 C 1.46854 * 111.19512 * 61.74142 * 7 6 5 21 21 C 1.53029 * 109.52461 * 298.25777 * 20 7 6 22 22 H 1.08999 * 109.47493 * 296.04760 * 1 2 3 23 23 H 1.09001 * 109.47015 * 56.04964 * 1 2 3 24 24 H 1.09010 * 109.47080 * 176.04415 * 1 2 3 25 25 H 1.08997 * 109.47342 * 183.94850 * 3 2 1 26 26 H 1.09001 * 109.46511 * 303.95321 * 3 2 1 27 27 H 1.09002 * 109.46722 * 63.94735 * 3 2 1 28 28 H 1.09003 * 109.52341 * 54.88186 * 4 2 1 29 29 H 1.09003 * 109.50419 * 57.68598 * 5 4 2 30 30 H 1.09003 * 109.50521 * 297.56784 * 5 4 2 31 31 H 1.09004 * 109.46298 * 180.81047 * 6 5 4 32 32 H 1.08998 * 109.46161 * 60.83903 * 6 5 4 33 33 H 1.09003 * 109.47361 * 51.53710 * 8 7 6 34 34 H 1.09007 * 109.47275 * 291.53957 * 8 7 6 35 35 H 0.97004 * 119.99825 * 185.00744 * 13 12 10 36 36 H 1.09002 * 117.49987 * 0.02562 * 18 9 8 37 37 H 1.09006 * 117.49958 * 145.01905 * 18 9 8 38 38 H 1.09003 * 117.49541 * 214.98580 * 19 9 8 39 39 H 1.09006 * 117.49853 * 359.97438 * 19 9 8 40 40 H 1.09006 * 109.45898 * 58.27421 * 20 7 6 41 41 H 1.08999 * 109.46165 * 178.23843 * 20 7 6 42 42 H 1.08999 * 109.50538 * 299.23768 * 21 20 7 43 43 H 1.09005 * 109.50530 * 179.11948 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.5209 -0.8493 1.0364 6 6 4.0681 -1.5969 2.2545 7 7 3.6790 -0.8885 3.4806 8 6 4.3024 -1.4995 4.6620 9 6 4.0488 -0.6175 5.8862 10 6 4.4674 0.8233 5.7472 11 1 3.8850 1.6026 6.2160 12 6 5.5943 1.1469 5.0213 13 7 6.4005 0.1969 4.6005 14 14 5.9757 2.9344 4.6358 15 1 6.8128 3.5070 5.7205 16 1 6.7098 3.0172 3.3477 17 1 4.7074 3.7000 4.5328 18 6 4.1917 -1.2648 7.2651 19 6 2.8034 -0.9136 6.7244 20 6 2.2184 -0.8373 3.6234 21 6 1.6160 -0.0671 2.4462 22 1 -0.3634 0.4513 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3634 -1.0253 -0.0709 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9162 -0.8525 27 1 1.7043 1.8723 0.9233 28 1 1.5741 -1.7712 1.1262 29 1 3.9393 0.1568 1.0087 30 1 3.7966 -1.3839 0.1273 31 1 5.1553 -1.6455 2.1927 32 1 3.6600 -2.6075 2.2739 33 1 5.3760 -1.5940 4.4985 34 1 3.8722 -2.4869 4.8301 35 1 7.2299 0.4275 4.1533 36 1 4.4669 -2.3190 7.3002 37 1 4.5884 -0.6483 8.0719 38 1 2.2872 -0.0661 7.1755 39 1 2.1647 -1.7365 6.4034 40 1 1.8190 -1.8514 3.6364 41 1 1.9621 -0.3342 4.5558 42 1 2.0044 0.9513 2.4407 43 1 0.5307 -0.0427 2.5444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:54 Heat of formation + Delta-G solvation = 41.364444 kcal Electronic energy + Delta-G solvation = -20315.001793 eV Core-core repulsion = 17589.181186 eV Total energy + Delta-G solvation = -2725.820607 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.21968 -37.13185 -35.17451 -31.98518 -30.95282 -30.25703 -27.47676 -26.05879 -25.21818 -23.56383 -22.54355 -21.05002 -20.81988 -18.84626 -18.78325 -16.19166 -15.64529 -15.03401 -14.68624 -14.48198 -14.24064 -14.08387 -13.60637 -13.50758 -12.84354 -12.80537 -12.43866 -11.88697 -11.81706 -11.66400 -11.53917 -11.30400 -11.05964 -10.88285 -10.57090 -10.50429 -10.40395 -10.37838 -10.25378 -9.92741 -9.80106 -9.20158 -8.92270 -8.57234 -8.04558 -7.93010 -7.08478 -5.84903 -3.87628 3.35881 3.43392 3.47550 4.15078 4.50442 4.80909 5.11755 5.20926 5.25335 5.35699 5.46350 5.60783 5.65335 5.68474 5.75282 5.80147 5.89334 5.95749 6.00075 6.13208 6.15823 6.19062 6.25418 6.33400 6.44165 6.55220 6.61978 6.64838 6.70012 6.73108 6.76103 6.91573 6.99346 7.21440 7.25477 7.26772 7.38663 7.66398 8.08655 8.27263 8.32574 8.61723 9.05618 9.72199 11.16908 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.008282 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.921934 B = 3380.165751 C = 4032.144609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.084 3.916 5 C -0.105 4.105 6 C 0.063 3.937 7 N -0.496 5.496 8 C 0.105 3.895 9 C 0.068 3.932 10 C -0.475 4.475 11 H 0.052 0.948 12 C 0.091 3.909 13 N -0.874 5.874 14 Si 0.888 3.112 15 H -0.286 1.286 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.208 4.208 19 C -0.220 4.220 20 C 0.064 3.936 21 C -0.146 4.146 22 H 0.028 0.972 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.012 0.988 33 H 0.117 0.883 34 H -0.018 1.018 35 H 0.256 0.744 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.008 0.992 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.695 -1.993 -7.392 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.131 4.131 4 C -0.024 4.024 5 C -0.143 4.143 6 C -0.066 4.066 7 N -0.219 5.219 8 C -0.022 4.022 9 C 0.068 3.932 10 C -0.512 4.512 11 H 0.070 0.930 12 C -0.112 4.112 13 N -0.511 5.511 14 Si 0.717 3.283 15 H -0.213 1.213 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.246 4.246 19 C -0.258 4.258 20 C -0.065 4.065 21 C -0.185 4.185 22 H 0.047 0.953 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.030 0.970 33 H 0.135 0.865 34 H 0.000 1.000 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.223 -1.765 -8.066 10.970 hybrid contribution -0.490 0.481 0.750 1.017 sum -7.713 -1.284 -7.316 10.708 Atomic orbital electron populations 1.22363 0.88252 1.01724 1.00281 1.62304 1.07268 1.14097 1.42805 1.22463 1.01395 0.89005 1.00245 1.21806 0.96084 0.96647 0.87859 1.21627 0.93420 1.01893 0.97329 1.21961 1.00518 0.93598 0.90554 1.61604 1.05892 1.52921 1.01507 1.21748 1.01818 0.90115 0.88539 1.18953 0.92468 0.95267 0.86554 1.20252 1.10160 0.89326 1.31485 0.92987 1.24707 0.95937 0.96398 0.94150 1.69764 1.10504 1.31306 1.39565 0.86674 0.78114 0.85907 0.77615 1.21285 1.21258 1.20107 1.22979 0.99735 0.98909 1.03001 1.22963 0.91290 1.01482 1.10033 1.21992 0.89316 0.96693 0.98522 1.22224 0.99008 1.01554 0.95720 0.95312 0.91938 0.91843 0.90838 0.92217 0.94793 0.90980 0.90962 0.91943 0.90598 0.96962 0.86522 0.99987 0.93331 0.92046 0.90516 0.90955 0.91975 0.97376 0.89637 0.90646 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 60.06 0.56 0.82 16 2 N -0.54 -7.58 5.01 -243.02 -1.22 -8.80 16 3 C 0.02 0.23 8.82 60.07 0.53 0.76 16 4 C 0.08 1.30 2.29 -67.59 -0.16 1.14 16 5 C -0.10 -1.72 5.24 -26.65 -0.14 -1.86 16 6 C 0.06 1.17 5.46 -3.83 -0.02 1.15 16 7 N -0.50 -10.57 4.25 -234.66 -1.00 -11.57 16 8 C 0.10 2.44 4.04 -3.83 -0.02 2.42 16 9 C 0.07 1.67 1.34 -155.66 -0.21 1.46 16 10 C -0.48 -12.78 8.73 -34.44 -0.30 -13.08 16 11 H 0.05 1.43 7.83 -52.49 -0.41 1.02 16 12 C 0.09 2.44 5.18 -17.82 -0.09 2.35 16 13 N -0.87 -23.58 10.69 55.43 0.59 -22.99 16 14 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.21 -4.75 9.96 -26.70 -0.27 -5.02 16 19 C -0.22 -4.82 8.16 -26.69 -0.22 -5.03 16 20 C 0.06 1.23 5.15 -3.83 -0.02 1.21 16 21 C -0.15 -2.44 4.69 -26.66 -0.12 -2.56 16 22 H 0.03 0.34 6.51 -51.93 -0.34 0.01 16 23 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 24 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 25 H 0.07 1.05 6.28 -51.93 -0.33 0.72 16 26 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.03 0.49 6.23 -51.93 -0.32 0.16 16 28 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.07 1.30 6.32 -51.93 -0.33 0.97 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.12 3.00 5.86 -51.93 -0.30 2.69 16 34 H -0.02 -0.40 8.08 -51.92 -0.42 -0.82 16 35 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 1.80 5.77 -51.93 -0.30 1.50 16 42 H 0.07 1.39 6.27 -51.93 -0.33 1.07 16 43 H 0.05 0.81 6.66 -51.93 -0.35 0.47 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -26.78 320.88 -9.90 -36.69 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.62 Total: 1.87 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.47 Total: -16.25 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -1.62 Total: -43.36 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.78 -9.90 -36.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.050 kcal (2) G-P(sol) polarization free energy of solvation -26.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds