Wall clock time and date at job start Mon Mar 30 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00245 * 2 1 4 4 C 1.46905 * 110.99723 * 123.94935 * 2 1 3 5 5 C 1.53118 * 109.52116 * 174.99970 * 4 2 1 6 6 C 1.53042 * 109.27828 * 177.62587 * 5 4 2 7 7 N 1.46850 * 109.52222 * 300.81996 * 6 5 4 8 8 C 1.46891 * 111.00071 * 185.83809 * 7 6 5 9 9 C 1.53002 * 109.47327 * 171.53745 * 8 7 6 10 10 C 1.50691 * 115.55028 * 305.82296 * 9 8 7 11 11 H 1.07994 * 120.00523 * 144.62319 * 10 9 8 12 12 C 1.37886 * 120.00083 * 324.62397 * 10 9 8 13 13 N 1.31516 * 119.99575 * 351.00089 * 12 10 9 14 14 Si 1.86796 * 120.00236 * 171.00649 * 12 10 9 15 15 H 1.48493 * 109.47425 * 89.99776 * 14 12 10 16 16 H 1.48499 * 109.46911 * 210.00166 * 14 12 10 17 17 H 1.48504 * 109.46795 * 329.99506 * 14 12 10 18 18 C 1.52997 * 117.50044 * 160.14843 * 9 8 7 19 19 C 1.53004 * 117.49698 * 91.49161 * 9 8 7 20 20 C 1.46854 * 111.19512 * 61.74142 * 7 6 5 21 21 C 1.53029 * 109.52461 * 298.25777 * 20 7 6 22 22 H 1.08999 * 109.47493 * 296.04760 * 1 2 3 23 23 H 1.09001 * 109.47015 * 56.04964 * 1 2 3 24 24 H 1.09010 * 109.47080 * 176.04415 * 1 2 3 25 25 H 1.08997 * 109.47342 * 183.94850 * 3 2 1 26 26 H 1.09001 * 109.46511 * 303.95321 * 3 2 1 27 27 H 1.09002 * 109.46722 * 63.94735 * 3 2 1 28 28 H 1.09003 * 109.52341 * 54.88186 * 4 2 1 29 29 H 1.09003 * 109.50419 * 57.68598 * 5 4 2 30 30 H 1.09003 * 109.50521 * 297.56784 * 5 4 2 31 31 H 1.09004 * 109.46298 * 180.81047 * 6 5 4 32 32 H 1.08998 * 109.46161 * 60.83903 * 6 5 4 33 33 H 1.09003 * 109.47361 * 51.53710 * 8 7 6 34 34 H 1.09007 * 109.47275 * 291.53957 * 8 7 6 35 35 H 0.97004 * 119.99825 * 185.00744 * 13 12 10 36 36 H 1.09002 * 117.49987 * 0.02562 * 18 9 8 37 37 H 1.09006 * 117.49958 * 145.01905 * 18 9 8 38 38 H 1.09003 * 117.49541 * 214.98580 * 19 9 8 39 39 H 1.09006 * 117.49853 * 359.97438 * 19 9 8 40 40 H 1.09006 * 109.45898 * 58.27421 * 20 7 6 41 41 H 1.08999 * 109.46165 * 178.23843 * 20 7 6 42 42 H 1.08999 * 109.50538 * 299.23768 * 21 20 7 43 43 H 1.09005 * 109.50530 * 179.11948 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 3.5209 -0.8493 1.0364 6 6 4.0681 -1.5969 2.2545 7 7 3.6790 -0.8885 3.4806 8 6 4.3024 -1.4995 4.6620 9 6 4.0488 -0.6175 5.8862 10 6 4.4674 0.8233 5.7472 11 1 3.8850 1.6026 6.2160 12 6 5.5943 1.1469 5.0213 13 7 6.4005 0.1969 4.6005 14 14 5.9757 2.9344 4.6358 15 1 6.8128 3.5070 5.7205 16 1 6.7098 3.0172 3.3477 17 1 4.7074 3.7000 4.5328 18 6 4.1917 -1.2648 7.2651 19 6 2.8034 -0.9136 6.7244 20 6 2.2184 -0.8373 3.6234 21 6 1.6160 -0.0671 2.4462 22 1 -0.3634 0.4513 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3634 -1.0253 -0.0709 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9162 -0.8525 27 1 1.7043 1.8723 0.9233 28 1 1.5741 -1.7712 1.1262 29 1 3.9393 0.1568 1.0087 30 1 3.7966 -1.3839 0.1273 31 1 5.1553 -1.6455 2.1927 32 1 3.6600 -2.6075 2.2739 33 1 5.3760 -1.5940 4.4985 34 1 3.8722 -2.4869 4.8301 35 1 7.2299 0.4275 4.1533 36 1 4.4669 -2.3190 7.3002 37 1 4.5884 -0.6483 8.0719 38 1 2.2872 -0.0661 7.1755 39 1 2.1647 -1.7365 6.4034 40 1 1.8190 -1.8514 3.6364 41 1 1.9621 -0.3342 4.5558 42 1 2.0044 0.9513 2.4407 43 1 0.5307 -0.0427 2.5444 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259294.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:54 Heat of formation + Delta-G solvation = 25.531337 kcal Electronic energy + Delta-G solvation = -20315.688368 eV Core-core repulsion = 17589.181186 eV Total energy + Delta-G solvation = -2726.507182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59735 -38.74026 -36.69241 -34.01206 -32.37076 -31.68996 -28.49663 -27.76254 -27.04639 -24.95325 -24.01434 -22.81355 -22.20714 -20.74761 -20.12500 -18.06768 -16.97851 -16.61904 -16.25706 -15.97917 -15.68154 -15.39585 -15.24136 -15.09027 -14.37906 -14.21976 -13.92793 -13.43483 -13.24159 -12.92771 -12.83515 -12.83256 -12.72148 -12.60053 -12.28661 -12.23921 -11.96737 -11.87562 -11.85991 -11.51484 -11.22645 -11.05031 -10.87947 -10.42748 -9.87708 -9.17393 -8.70939 -7.87636 -5.96155 1.42983 1.47307 1.54477 2.51409 3.03896 3.11627 3.39021 3.75573 3.87706 3.97643 4.19655 4.28066 4.35780 4.37450 4.47716 4.52227 4.56209 4.59320 4.70049 4.74157 4.77908 4.82083 4.87874 4.90748 4.95605 5.03437 5.05840 5.07743 5.10325 5.16604 5.23121 5.27315 5.44790 5.48784 5.56693 5.69889 6.08349 6.10612 6.17928 6.47099 6.66753 6.75902 7.02248 7.64802 9.11277 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.008282 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.921934 B = 3380.165751 C = 4032.144609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.545 5.545 3 C 0.019 3.981 4 C 0.093 3.907 5 C -0.096 4.096 6 C 0.065 3.935 7 N -0.515 5.515 8 C 0.117 3.883 9 C 0.041 3.959 10 C -0.492 4.492 11 H 0.037 0.963 12 C 0.057 3.943 13 N -0.888 5.888 14 Si 0.936 3.064 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.278 1.278 18 C -0.209 4.209 19 C -0.196 4.196 20 C 0.067 3.933 21 C -0.136 4.136 22 H 0.026 0.974 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.022 0.978 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.089 0.911 34 H -0.013 1.013 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.018 0.982 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 -2.273 -8.511 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.130 4.130 4 C -0.016 4.016 5 C -0.134 4.134 6 C -0.064 4.064 7 N -0.239 5.239 8 C -0.011 4.011 9 C 0.040 3.960 10 C -0.529 4.529 11 H 0.055 0.945 12 C -0.144 4.144 13 N -0.525 5.525 14 Si 0.763 3.237 15 H -0.210 1.210 16 H -0.211 1.211 17 H -0.203 1.203 18 C -0.248 4.248 19 C -0.233 4.233 20 C -0.062 4.062 21 C -0.175 4.175 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.005 0.995 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.684 -2.043 -9.185 12.804 hybrid contribution -0.057 0.565 1.116 1.253 sum -8.741 -1.478 -8.068 11.987 Atomic orbital electron populations 1.22451 0.86555 1.02764 1.00921 1.62316 1.08787 1.14004 1.41613 1.22458 1.00841 0.89072 1.00586 1.21678 0.95118 0.97175 0.87632 1.21535 0.94394 1.00673 0.96844 1.21943 0.99629 0.94379 0.90410 1.61530 1.07172 1.53586 1.01594 1.21455 1.00360 0.90202 0.89063 1.19040 0.94759 0.94554 0.87656 1.20398 1.10252 0.90415 1.31818 0.94484 1.25193 0.95944 0.99084 0.94203 1.69886 1.10546 1.32265 1.39825 0.85930 0.77667 0.82696 0.77366 1.20965 1.21100 1.20341 1.22980 1.00628 0.99365 1.01782 1.22902 0.90685 1.01736 1.08007 1.21938 0.88187 0.97300 0.98733 1.22133 0.99796 1.00046 0.95565 0.95539 0.90269 0.90801 0.92003 0.90103 0.95939 0.90031 0.92777 0.90253 0.92416 0.95748 0.89274 0.99486 0.93511 0.90773 0.91312 0.90966 0.90127 0.96366 0.91690 0.92749 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.32 127.69 1.19 1.62 16 2 N -0.54 -13.85 5.01 -922.79 -4.62 -18.47 16 3 C 0.02 0.47 8.82 127.69 1.13 1.60 16 4 C 0.09 2.65 2.29 44.99 0.10 2.75 16 5 C -0.10 -3.06 5.24 30.65 0.16 -2.90 16 6 C 0.07 2.40 5.46 86.33 0.47 2.87 16 7 N -0.52 -21.87 4.25 -896.34 -3.81 -25.68 16 8 C 0.12 5.45 4.04 86.31 0.35 5.80 16 9 C 0.04 1.99 1.34 -52.93 -0.07 1.91 16 10 C -0.49 -26.75 8.73 25.60 0.22 -26.53 16 11 H 0.04 2.07 7.83 -2.91 -0.02 2.04 16 12 C 0.06 3.09 5.18 84.66 0.44 3.53 16 13 N -0.89 -48.56 10.69 21.45 0.23 -48.33 16 14 Si 0.94 43.95 29.55 68.60 2.03 45.97 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 18 C -0.21 -9.46 9.96 30.62 0.30 -9.15 16 19 C -0.20 -8.36 8.16 30.62 0.25 -8.11 16 20 C 0.07 2.52 5.15 86.32 0.44 2.96 16 21 C -0.14 -4.35 4.69 30.64 0.14 -4.21 16 22 H 0.03 0.55 6.51 -2.39 -0.02 0.54 16 23 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 24 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.06 1.71 6.28 -2.39 -0.02 1.69 16 26 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 27 H 0.02 0.62 6.23 -2.39 -0.01 0.60 16 28 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 29 H 0.05 1.92 6.32 -2.39 -0.02 1.91 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 2.31 8.03 -2.39 -0.02 2.29 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 4.66 5.86 -2.39 -0.01 4.65 16 34 H -0.01 -0.57 8.08 -2.38 -0.02 -0.59 16 35 H 0.26 13.53 8.32 -92.71 -0.77 12.76 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 38 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 40 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.06 2.69 5.77 -2.39 -0.01 2.67 16 42 H 0.05 1.98 6.27 -2.39 -0.01 1.96 16 43 H 0.07 2.03 6.66 -2.38 -0.02 2.01 16 Total: -1.00 -56.35 320.88 -0.09 -56.44 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.96 Total: 17.93 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 5.13 Total: -27.86 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -8.20 Total: -92.48 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -56.35 -0.09 -56.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259294.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.973 kcal (2) G-P(sol) polarization free energy of solvation -56.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds