Wall clock time and date at job start Mon Mar 30 2020 04:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00098 * 2 1 4 4 C 1.53005 * 109.47137 * 71.82217 * 3 2 1 5 5 C 1.50705 * 115.54587 * 53.92501 * 4 3 2 6 6 H 1.08001 * 119.99884 * 219.91467 * 5 4 3 7 7 C 1.37881 * 119.99990 * 39.63510 * 5 4 3 8 8 N 1.31513 * 119.99844 * 355.90524 * 7 5 4 9 9 Si 1.86794 * 119.99786 * 175.90213 * 7 5 4 10 10 H 1.48494 * 109.47423 * 60.00242 * 9 7 5 11 11 H 1.48509 * 109.46871 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47398 * 299.99878 * 9 7 5 13 13 C 1.52997 * 117.51981 * 199.62165 * 4 3 2 14 14 C 1.52997 * 117.50356 * 268.25552 * 4 3 2 15 15 C 1.46899 * 110.99833 * 236.05036 * 2 1 3 16 16 H 1.09005 * 109.49979 * 178.87506 * 15 2 1 17 17 C 1.53123 * 109.50397 * 298.94887 * 15 2 1 18 18 C 1.53116 * 109.16191 * 177.59978 * 17 15 2 19 19 C 1.53043 * 109.27535 * 302.34547 * 18 17 15 20 20 N 1.46846 * 109.52448 * 59.18376 * 19 18 17 21 21 C 1.46891 * 111.00128 * 174.15911 * 20 19 18 22 22 C 1.46852 * 111.19661 * 298.25534 * 20 19 18 23 23 H 1.08999 * 109.46916 * 64.64286 * 1 2 3 24 24 H 1.09001 * 109.47137 * 184.64362 * 1 2 3 25 25 H 1.08995 * 109.46963 * 304.64521 * 1 2 3 26 26 H 1.09007 * 109.47175 * 311.82908 * 3 2 1 27 27 H 1.09000 * 109.47911 * 191.82432 * 3 2 1 28 28 H 0.97002 * 119.99876 * 184.99708 * 8 7 5 29 29 H 1.09008 * 117.49730 * 214.97275 * 13 4 3 30 30 H 1.08995 * 117.50191 * 359.97438 * 13 4 3 31 31 H 1.08999 * 117.49389 * 359.97351 * 14 4 3 32 32 H 1.09002 * 117.49886 * 144.97024 * 14 4 3 33 33 H 1.08997 * 109.52213 * 297.50227 * 17 15 2 34 34 H 1.09001 * 109.52033 * 57.69508 * 17 15 2 35 35 H 1.09000 * 109.50339 * 62.28456 * 18 17 15 36 36 H 1.08994 * 109.50246 * 182.36966 * 18 17 15 37 37 H 1.09005 * 109.45780 * 179.19177 * 19 18 17 38 38 H 1.08997 * 109.46600 * 299.17619 * 19 18 17 39 39 H 1.08997 * 109.47193 * 63.95123 * 21 20 19 40 40 H 1.09004 * 109.47238 * 183.95208 * 21 20 19 41 41 H 1.09006 * 109.47291 * 303.94979 * 21 20 19 42 42 H 1.08994 * 109.46073 * 301.72872 * 22 20 19 43 43 H 1.09000 * 109.46013 * 181.75765 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7581 2.0088 1.3705 5 6 2.2838 1.2305 2.5491 6 1 1.7048 1.1714 3.4589 7 6 3.5014 0.5890 2.4639 8 7 4.1664 0.5886 1.3293 9 14 4.2062 -0.2793 3.9601 10 1 3.2699 -1.3441 4.4013 11 1 5.5159 -0.8853 3.6094 12 1 4.3936 0.7016 5.0591 13 6 1.8002 3.5358 1.4569 14 6 0.4634 2.7999 1.5672 15 6 1.9954 -0.7659 -1.1376 16 1 3.0849 -0.7333 -1.1253 17 6 1.5264 -2.2200 -1.0359 18 6 2.0291 -2.9968 -2.2559 19 6 1.5126 -2.3251 -3.5304 20 7 1.9890 -0.9370 -3.5813 21 6 1.6287 -0.3032 -4.8565 22 6 1.4800 -0.1590 -2.4446 23 1 -0.3633 0.4401 -0.9287 24 1 -0.3633 -1.0243 0.0832 25 1 -0.3633 0.5842 0.8454 26 1 1.4858 1.9563 -0.7658 27 1 3.0647 1.3503 -0.2106 28 1 4.9867 0.0773 1.2482 29 1 2.2081 3.9774 2.3662 30 1 1.9975 4.0866 0.5373 31 1 -0.2192 2.8665 0.7200 32 1 -0.0085 2.7570 2.5489 33 1 1.9274 -2.6693 -0.1274 34 1 0.4371 -2.2502 -1.0083 35 1 3.1190 -2.9992 -2.2619 36 1 1.6630 -4.0224 -2.2104 37 1 1.8806 -2.8675 -4.4014 38 1 0.4227 -2.3351 -3.5301 39 1 0.5435 -0.2417 -4.9378 40 1 2.0535 0.6998 -4.8965 41 1 2.0218 -0.8974 -5.6815 42 1 0.3903 -0.1793 -2.4494 43 1 1.8243 0.8719 -2.5269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:00 Heat of formation + Delta-G solvation = 42.058239 kcal Electronic energy + Delta-G solvation = -20281.586712 eV Core-core repulsion = 17555.796190 eV Total energy + Delta-G solvation = -2725.790522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.23263 -37.00188 -34.86448 -32.53866 -31.92209 -29.00186 -26.83828 -26.33652 -25.29868 -23.80958 -22.48137 -21.11887 -20.88465 -18.89227 -18.59547 -16.05341 -15.68524 -15.13922 -14.64393 -14.48530 -14.31187 -13.92123 -13.64653 -13.15891 -13.09164 -12.70930 -12.30955 -12.18192 -12.08024 -11.50477 -11.41343 -11.18163 -11.04331 -10.85591 -10.65300 -10.55945 -10.37796 -10.30516 -10.07085 -9.86040 -9.81127 -9.24730 -8.74789 -8.52450 -8.14573 -7.98482 -6.99523 -5.76339 -3.83891 3.41304 3.45384 3.48772 4.10755 4.54373 4.84130 5.15209 5.17446 5.25449 5.38526 5.38895 5.53872 5.59633 5.69014 5.72463 5.80735 5.90205 5.96722 6.03816 6.09948 6.17308 6.20585 6.22226 6.35245 6.44720 6.46394 6.63014 6.70928 6.74938 6.76539 6.87479 6.98311 7.00949 7.25765 7.26987 7.31615 7.41569 7.71868 8.12920 8.33102 8.38201 8.66460 9.09995 9.76228 11.21978 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.007708 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.150199 B = 3631.913333 C = 4323.310984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.486 5.486 3 C 0.106 3.894 4 C 0.067 3.933 5 C -0.471 4.471 6 H 0.052 0.948 7 C 0.085 3.915 8 N -0.874 5.874 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.282 1.282 13 C -0.209 4.209 14 C -0.218 4.218 15 C 0.098 3.902 16 H 0.095 0.905 17 C -0.112 4.112 18 C -0.115 4.115 19 C 0.058 3.942 20 N -0.539 5.539 21 C 0.027 3.973 22 C 0.024 3.976 23 H 0.004 0.996 24 H 0.051 0.949 25 H 0.072 0.928 26 H -0.019 1.019 27 H 0.118 0.882 28 H 0.257 0.743 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.018 0.982 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -4.352 -9.523 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.207 5.207 3 C -0.021 4.021 4 C 0.066 3.934 5 C -0.508 4.508 6 H 0.070 0.930 7 C -0.118 4.118 8 N -0.512 5.512 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.207 1.207 13 C -0.247 4.247 14 C -0.255 4.255 15 C -0.012 4.012 16 H 0.113 0.887 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.070 4.070 20 N -0.263 5.263 21 C -0.122 4.122 22 C -0.105 4.105 23 H 0.022 0.978 24 H 0.069 0.931 25 H 0.090 0.910 26 H -0.001 1.001 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.977 -4.612 -9.099 10.949 hybrid contribution -1.000 0.093 -0.089 1.008 sum -4.976 -4.519 -9.189 11.385 Atomic orbital electron populations 1.22481 0.90472 1.00445 0.99329 1.61914 1.04786 1.15552 1.38429 1.21809 1.02157 0.84906 0.93196 1.18983 0.91926 0.87525 0.94922 1.20223 1.02439 1.31345 0.96778 0.93005 1.24748 0.96382 0.95240 0.95383 1.69748 1.16738 1.40728 1.23947 0.86727 0.78180 0.79794 0.83508 1.20484 1.21508 1.20746 1.22971 1.01276 1.00384 1.00101 1.22908 0.91447 1.11384 0.99771 1.21689 1.01037 0.92296 0.86166 0.88740 1.21644 0.99974 0.95656 0.97763 1.21572 1.01817 0.97965 0.94012 1.22078 0.96877 0.89384 0.98675 1.61902 1.60026 1.02150 1.02245 1.22333 0.98028 1.00020 0.91811 1.22971 0.97117 0.98126 0.92331 0.97813 0.93052 0.90972 1.00103 0.86411 0.93290 0.90538 0.92075 0.92029 0.90965 0.90942 0.92804 0.91035 0.91947 0.91382 0.95572 0.96299 0.91528 0.91774 0.95311 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.59 60.07 0.52 0.93 16 2 N -0.49 -10.39 4.38 -234.78 -1.03 -11.42 16 3 C 0.11 2.47 3.25 -3.82 -0.01 2.46 16 4 C 0.07 1.65 1.60 -155.66 -0.25 1.40 16 5 C -0.47 -12.74 8.69 -34.44 -0.30 -13.03 16 6 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 7 C 0.09 2.29 5.39 -17.82 -0.10 2.19 16 8 N -0.87 -23.57 10.50 55.43 0.58 -22.99 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.21 -4.79 9.96 -26.73 -0.27 -5.06 16 14 C -0.22 -4.79 8.38 -26.73 -0.22 -5.02 16 15 C 0.10 1.85 2.37 -67.63 -0.16 1.69 16 16 H 0.09 2.05 7.98 -51.93 -0.41 1.64 16 17 C -0.11 -1.86 5.14 -26.61 -0.14 -1.99 16 18 C -0.12 -1.59 6.09 -26.65 -0.16 -1.75 16 19 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 20 N -0.54 -8.12 4.91 -242.96 -1.19 -9.32 16 21 C 0.03 0.33 9.59 60.06 0.58 0.91 16 22 C 0.02 0.41 4.08 -3.83 -0.02 0.39 16 23 H 0.00 0.07 6.22 -51.93 -0.32 -0.26 16 24 H 0.05 0.91 6.32 -51.93 -0.33 0.58 16 25 H 0.07 1.47 6.07 -51.93 -0.32 1.15 16 26 H -0.02 -0.43 7.16 -51.92 -0.37 -0.80 16 27 H 0.12 3.04 5.70 -51.93 -0.30 2.74 16 28 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 29 H 0.08 1.77 8.14 -51.92 -0.42 1.35 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 32 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.05 0.86 6.33 -51.93 -0.33 0.53 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.03 0.49 6.32 -51.93 -0.33 0.16 16 43 H 0.07 1.31 6.93 -51.93 -0.36 0.95 16 LS Contribution 321.95 15.07 4.85 4.85 Total: -1.00 -26.92 321.95 -10.03 -36.96 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.68 Total: 1.78 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -0.55 Total: -16.14 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -1.64 Total: -43.72 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.92 -10.03 -36.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.016 kcal (2) G-P(sol) polarization free energy of solvation -26.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds