Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99923 * 2 1 4 4 C 1.53005 * 109.46966 * 68.80177 * 3 2 1 5 5 C 1.50693 * 115.54992 * 301.65119 * 4 3 2 6 6 H 1.07998 * 120.00344 * 126.93910 * 5 4 3 7 7 C 1.37879 * 120.00105 * 306.93976 * 5 4 3 8 8 N 1.31517 * 119.99908 * 351.72786 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 171.73297 * 7 5 4 10 10 H 1.48498 * 109.47566 * 60.00088 * 9 7 5 11 11 H 1.48509 * 109.46955 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47146 * 299.99539 * 9 7 5 13 13 C 1.53003 * 117.49552 * 155.98139 * 4 3 2 14 14 C 1.53002 * 117.49847 * 87.32643 * 4 3 2 15 15 C 1.46893 * 111.00149 * 236.04419 * 2 1 3 16 16 H 1.09004 * 109.50049 * 64.03539 * 15 2 1 17 17 C 1.53117 * 109.50306 * 303.95840 * 15 2 1 18 18 C 1.53125 * 109.16036 * 182.40294 * 17 15 2 19 19 C 1.53044 * 109.27664 * 57.65415 * 18 17 15 20 20 N 1.46851 * 109.51865 * 300.81594 * 19 18 17 21 21 C 1.46902 * 110.99802 * 185.84000 * 20 19 18 22 22 C 1.46851 * 111.19568 * 61.74768 * 20 19 18 23 23 H 1.08999 * 109.47061 * 51.60675 * 1 2 3 24 24 H 1.08997 * 109.47367 * 171.61224 * 1 2 3 25 25 H 1.08997 * 109.47017 * 291.60912 * 1 2 3 26 26 H 1.09001 * 109.46987 * 188.80074 * 3 2 1 27 27 H 1.08998 * 109.46986 * 308.80514 * 3 2 1 28 28 H 0.96998 * 119.99854 * 185.03641 * 8 7 5 29 29 H 1.09000 * 117.50124 * 0.02562 * 13 4 3 30 30 H 1.08998 * 117.49705 * 145.01445 * 13 4 3 31 31 H 1.08996 * 117.49442 * 214.97913 * 14 4 3 32 32 H 1.08998 * 117.49642 * 359.97438 * 14 4 3 33 33 H 1.09003 * 109.52000 * 302.30118 * 17 15 2 34 34 H 1.08999 * 109.52766 * 62.49843 * 17 15 2 35 35 H 1.08997 * 109.50174 * 177.58977 * 18 17 15 36 36 H 1.08994 * 109.50362 * 297.67235 * 18 17 15 37 37 H 1.08996 * 109.46718 * 60.83607 * 19 18 17 38 38 H 1.09001 * 109.45908 * 180.80512 * 19 18 17 39 39 H 1.09001 * 109.46819 * 63.95726 * 21 20 19 40 40 H 1.08997 * 109.47206 * 183.95694 * 21 20 19 41 41 H 1.09006 * 109.47190 * 303.95880 * 21 20 19 42 42 H 1.09004 * 109.45610 * 178.23623 * 22 20 19 43 43 H 1.09005 * 109.46019 * 58.27139 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6912 2.0345 1.3449 5 6 0.2333 2.1057 1.7195 6 1 -0.0982 1.7248 2.6741 7 6 -0.6774 2.6571 0.8434 8 7 -0.2580 3.2663 -0.2441 9 14 -2.5070 2.5390 1.2011 10 1 -2.8029 3.2074 2.4938 11 1 -3.2680 3.2060 0.1141 12 1 -2.9048 1.1105 1.2800 13 6 2.5900 3.1937 1.7804 14 6 2.7023 1.8347 2.4758 15 6 1.9955 -0.7660 -1.1375 16 1 1.7059 -0.2795 -2.0690 17 6 1.4260 -2.1869 -1.1043 18 6 2.0259 -2.9958 -2.2579 19 6 3.5514 -2.9962 -2.1349 20 7 4.0471 -1.6144 -2.1727 21 6 5.5155 -1.5824 -2.1964 22 6 3.5217 -0.8310 -1.0472 23 1 -0.3633 0.6382 -0.8054 24 1 -0.3634 -1.0166 -0.1499 25 1 -0.3633 0.3785 0.9554 26 1 3.0738 1.3467 -0.1572 27 1 1.5244 1.9414 -0.8008 28 1 -0.8925 3.7173 -0.8227 29 1 3.3976 3.4842 1.1086 30 1 2.1267 4.0076 2.3380 31 1 2.3128 1.7551 3.4907 32 1 3.5839 1.2306 2.2617 33 1 1.6819 -2.6598 -0.1562 34 1 0.3421 -2.1476 -1.2121 35 1 1.6570 -4.0205 -2.2141 36 1 1.7368 -2.5451 -3.2072 37 1 3.8396 -3.4599 -1.1916 38 1 3.9822 -3.5594 -2.9628 39 1 5.8742 -2.0455 -3.1157 40 1 5.8572 -0.5483 -2.1532 41 1 5.9048 -2.1298 -1.3379 42 1 3.9312 0.1785 -1.0850 43 1 3.8102 -1.3049 -0.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = 43.986564 kcal Electronic energy + Delta-G solvation = -20181.335684 eV Core-core repulsion = 17455.628780 eV Total energy + Delta-G solvation = -2725.706904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.14848 -37.08570 -34.89413 -32.56958 -32.16048 -29.36815 -27.18725 -25.88653 -25.65414 -23.39383 -22.38817 -21.07213 -20.70881 -19.14011 -18.86760 -16.01892 -15.92294 -15.15026 -14.65174 -14.45825 -14.19365 -14.05896 -13.71844 -13.40993 -12.86192 -12.73442 -12.38011 -12.30022 -12.11430 -11.47342 -11.46416 -11.17274 -11.06199 -10.92643 -10.63913 -10.61036 -10.41187 -10.22860 -10.13548 -10.08394 -9.61051 -9.24499 -8.80804 -8.46501 -8.18398 -8.00473 -7.11807 -6.02457 -3.97018 3.27423 3.33462 3.36270 4.02615 4.36887 4.82222 5.05218 5.11252 5.16672 5.24177 5.40978 5.52190 5.53990 5.63741 5.68867 5.83205 5.88641 5.94165 6.00498 6.07404 6.17625 6.22881 6.29012 6.42777 6.48344 6.58012 6.69678 6.72293 6.82422 6.84477 6.96512 7.07437 7.21621 7.23389 7.29288 7.47324 7.55066 7.55573 7.92631 8.27065 8.34045 8.52140 8.91764 9.52520 11.01972 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.007061 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.114734 B = 3964.477891 C = 4666.575135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.522 5.522 3 C 0.095 3.905 4 C 0.064 3.936 5 C -0.480 4.480 6 H 0.060 0.940 7 C 0.074 3.926 8 N -0.877 5.877 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.271 1.271 13 C -0.193 4.193 14 C -0.201 4.201 15 C 0.086 3.914 16 H 0.037 0.963 17 C -0.115 4.115 18 C -0.115 4.115 19 C 0.057 3.943 20 N -0.546 5.546 21 C 0.028 3.972 22 C 0.065 3.935 23 H 0.021 0.979 24 H 0.031 0.969 25 H 0.115 0.885 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.076 0.924 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -9.803 -3.909 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.247 5.247 3 C -0.033 4.033 4 C 0.063 3.937 5 C -0.518 4.518 6 H 0.078 0.922 7 C -0.129 4.129 8 N -0.514 5.514 9 Si 0.705 3.295 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.231 4.231 14 C -0.238 4.238 15 C -0.023 4.023 16 H 0.055 0.945 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.071 4.071 20 N -0.271 5.271 21 C -0.121 4.121 22 C -0.063 4.063 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.133 0.867 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.050 -9.766 -4.124 12.206 hybrid contribution -0.868 0.169 0.129 0.894 sum 5.182 -9.597 -3.995 11.615 Atomic orbital electron populations 1.23026 0.86911 0.97677 1.05453 1.61947 1.08774 1.14833 1.39100 1.21661 0.95530 0.86856 0.99222 1.18761 0.90987 0.94111 0.89842 1.20330 0.89997 1.39457 1.01989 0.92206 1.24948 0.98178 0.94993 0.94780 1.69920 1.34331 1.33483 1.13690 0.86901 0.85904 0.78729 0.77986 1.20249 1.21270 1.19655 1.22828 1.03736 0.92114 1.04447 1.22784 1.02537 1.00188 0.98329 1.21501 0.93046 0.94067 0.93667 0.94515 1.21706 1.00207 0.95252 0.98106 1.21581 0.94325 0.99748 0.99716 1.22073 0.95996 0.89167 0.99837 1.61880 1.08033 1.12320 1.44829 1.22314 0.87570 1.01924 1.00249 1.22158 0.95515 0.97773 0.90848 0.96007 0.95079 0.86709 0.94650 0.91775 0.92923 0.92143 0.90577 0.91036 0.91714 0.91670 0.91532 0.91774 0.91418 0.95084 0.91348 0.91714 0.91462 0.95908 0.90615 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 7.84 60.07 0.47 0.84 16 2 N -0.52 -11.11 4.61 -234.79 -1.08 -12.19 16 3 C 0.09 2.19 4.59 -3.82 -0.02 2.17 16 4 C 0.06 1.56 1.76 -155.66 -0.27 1.28 16 5 C -0.48 -12.56 6.00 -34.44 -0.21 -12.77 16 6 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 7 C 0.07 1.93 3.32 -17.82 -0.06 1.87 16 8 N -0.88 -23.85 11.48 55.43 0.64 -23.21 16 9 Si 0.88 20.35 29.02 -169.99 -4.93 15.42 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 C -0.19 -4.48 9.95 -26.69 -0.27 -4.74 16 14 C -0.20 -4.46 9.94 -26.69 -0.27 -4.73 16 15 C 0.09 1.58 2.10 -67.64 -0.14 1.44 16 16 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.11 -1.80 4.88 -26.61 -0.13 -1.93 16 18 C -0.12 -1.50 6.09 -26.64 -0.16 -1.66 16 19 C 0.06 0.73 5.46 -3.83 -0.02 0.71 16 20 N -0.55 -7.91 4.91 -242.95 -1.19 -9.10 16 21 C 0.03 0.33 9.62 60.07 0.58 0.91 16 22 C 0.06 1.08 4.53 -3.83 -0.02 1.06 16 23 H 0.02 0.52 7.36 -51.93 -0.38 0.13 16 24 H 0.03 0.61 5.66 -51.93 -0.29 0.31 16 25 H 0.12 2.79 4.11 -51.93 -0.21 2.58 16 26 H 0.04 0.77 5.72 -51.93 -0.30 0.48 16 27 H 0.06 1.68 6.33 -51.93 -0.33 1.35 16 28 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.06 6.24 -51.93 -0.32 0.74 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 1.34 6.10 -51.93 -0.32 1.02 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 318.93 15.07 4.81 4.81 Total: -1.00 -26.61 318.93 -9.89 -36.50 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.61 Total: 3.33 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.51 Total: -15.55 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -1.64 Total: -44.50 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.93 Total: 15.42 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.61 -9.89 -36.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.486 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds