Wall clock time and date at job start Mon Mar 30 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99923 * 2 1 4 4 C 1.53005 * 109.46966 * 68.80177 * 3 2 1 5 5 C 1.50693 * 115.54992 * 301.65119 * 4 3 2 6 6 H 1.07998 * 120.00344 * 126.93910 * 5 4 3 7 7 C 1.37879 * 120.00105 * 306.93976 * 5 4 3 8 8 N 1.31517 * 119.99908 * 351.72786 * 7 5 4 9 9 Si 1.86800 * 119.99879 * 171.73297 * 7 5 4 10 10 H 1.48498 * 109.47566 * 60.00088 * 9 7 5 11 11 H 1.48509 * 109.46955 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47146 * 299.99539 * 9 7 5 13 13 C 1.53003 * 117.49552 * 155.98139 * 4 3 2 14 14 C 1.53002 * 117.49847 * 87.32643 * 4 3 2 15 15 C 1.46893 * 111.00149 * 236.04419 * 2 1 3 16 16 H 1.09004 * 109.50049 * 64.03539 * 15 2 1 17 17 C 1.53117 * 109.50306 * 303.95840 * 15 2 1 18 18 C 1.53125 * 109.16036 * 182.40294 * 17 15 2 19 19 C 1.53044 * 109.27664 * 57.65415 * 18 17 15 20 20 N 1.46851 * 109.51865 * 300.81594 * 19 18 17 21 21 C 1.46902 * 110.99802 * 185.84000 * 20 19 18 22 22 C 1.46851 * 111.19568 * 61.74768 * 20 19 18 23 23 H 1.08999 * 109.47061 * 51.60675 * 1 2 3 24 24 H 1.08997 * 109.47367 * 171.61224 * 1 2 3 25 25 H 1.08997 * 109.47017 * 291.60912 * 1 2 3 26 26 H 1.09001 * 109.46987 * 188.80074 * 3 2 1 27 27 H 1.08998 * 109.46986 * 308.80514 * 3 2 1 28 28 H 0.96998 * 119.99854 * 185.03641 * 8 7 5 29 29 H 1.09000 * 117.50124 * 0.02562 * 13 4 3 30 30 H 1.08998 * 117.49705 * 145.01445 * 13 4 3 31 31 H 1.08996 * 117.49442 * 214.97913 * 14 4 3 32 32 H 1.08998 * 117.49642 * 359.97438 * 14 4 3 33 33 H 1.09003 * 109.52000 * 302.30118 * 17 15 2 34 34 H 1.08999 * 109.52766 * 62.49843 * 17 15 2 35 35 H 1.08997 * 109.50174 * 177.58977 * 18 17 15 36 36 H 1.08994 * 109.50362 * 297.67235 * 18 17 15 37 37 H 1.08996 * 109.46718 * 60.83607 * 19 18 17 38 38 H 1.09001 * 109.45908 * 180.80512 * 19 18 17 39 39 H 1.09001 * 109.46819 * 63.95726 * 21 20 19 40 40 H 1.08997 * 109.47206 * 183.95694 * 21 20 19 41 41 H 1.09006 * 109.47190 * 303.95880 * 21 20 19 42 42 H 1.09004 * 109.45610 * 178.23623 * 22 20 19 43 43 H 1.09005 * 109.46019 * 58.27139 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6912 2.0345 1.3449 5 6 0.2333 2.1057 1.7195 6 1 -0.0982 1.7248 2.6741 7 6 -0.6774 2.6571 0.8434 8 7 -0.2580 3.2663 -0.2441 9 14 -2.5070 2.5390 1.2011 10 1 -2.8029 3.2074 2.4938 11 1 -3.2680 3.2060 0.1141 12 1 -2.9048 1.1105 1.2800 13 6 2.5900 3.1937 1.7804 14 6 2.7023 1.8347 2.4758 15 6 1.9955 -0.7660 -1.1375 16 1 1.7059 -0.2795 -2.0690 17 6 1.4260 -2.1869 -1.1043 18 6 2.0259 -2.9958 -2.2579 19 6 3.5514 -2.9962 -2.1349 20 7 4.0471 -1.6144 -2.1727 21 6 5.5155 -1.5824 -2.1964 22 6 3.5217 -0.8310 -1.0472 23 1 -0.3633 0.6382 -0.8054 24 1 -0.3634 -1.0166 -0.1499 25 1 -0.3633 0.3785 0.9554 26 1 3.0738 1.3467 -0.1572 27 1 1.5244 1.9414 -0.8008 28 1 -0.8925 3.7173 -0.8227 29 1 3.3976 3.4842 1.1086 30 1 2.1267 4.0076 2.3380 31 1 2.3128 1.7551 3.4907 32 1 3.5839 1.2306 2.2617 33 1 1.6819 -2.6598 -0.1562 34 1 0.3421 -2.1476 -1.2121 35 1 1.6570 -4.0205 -2.2141 36 1 1.7368 -2.5451 -3.2072 37 1 3.8396 -3.4599 -1.1916 38 1 3.9822 -3.5594 -2.9628 39 1 5.8742 -2.0455 -3.1157 40 1 5.8572 -0.5483 -2.1532 41 1 5.9048 -2.1298 -1.3379 42 1 3.9312 0.1785 -1.0850 43 1 3.8102 -1.3049 -0.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:02 Heat of formation + Delta-G solvation = 27.557850 kcal Electronic energy + Delta-G solvation = -20182.048086 eV Core-core repulsion = 17455.628780 eV Total energy + Delta-G solvation = -2726.419306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51363 -38.74063 -36.46712 -34.21779 -33.71050 -30.77541 -28.67750 -27.72520 -27.10707 -24.94980 -23.60938 -22.87958 -22.10162 -20.80031 -20.47215 -17.97263 -17.22632 -16.73693 -16.27087 -15.81728 -15.67540 -15.44047 -15.16719 -14.99450 -14.40751 -14.25763 -13.89060 -13.68585 -13.32419 -13.17746 -13.00113 -12.88717 -12.55328 -12.43500 -12.32776 -12.18202 -11.96877 -11.94050 -11.69879 -11.50031 -11.10286 -11.04698 -10.71904 -10.37458 -9.92188 -9.27850 -8.90724 -8.03490 -6.02592 1.40986 1.43865 1.48818 2.43038 2.84865 3.13396 3.38738 3.76876 3.80681 3.96586 4.10108 4.25081 4.33372 4.40017 4.54441 4.56862 4.58077 4.64804 4.73230 4.76979 4.84040 4.89534 4.92081 4.97344 5.00319 5.02963 5.04102 5.09851 5.11637 5.22276 5.26566 5.36580 5.48299 5.59523 5.63032 5.69988 5.92233 6.06442 6.18465 6.46412 6.51789 6.65569 6.90314 7.49062 8.99510 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.025036 B = 0.007061 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.114734 B = 3964.477891 C = 4666.575135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.522 5.522 3 C 0.109 3.891 4 C 0.035 3.965 5 C -0.488 4.488 6 H 0.051 0.949 7 C 0.043 3.957 8 N -0.902 5.902 9 Si 0.924 3.076 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.261 1.261 13 C -0.195 4.195 14 C -0.179 4.179 15 C 0.086 3.914 16 H 0.013 0.987 17 C -0.110 4.110 18 C -0.110 4.110 19 C 0.056 3.944 20 N -0.559 5.559 21 C 0.027 3.973 22 C 0.077 3.923 23 H -0.005 1.005 24 H 0.055 0.945 25 H 0.095 0.905 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.257 0.743 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.060 0.940 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.893 -11.838 -4.039 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.246 5.246 3 C -0.019 4.019 4 C 0.034 3.966 5 C -0.526 4.526 6 H 0.069 0.931 7 C -0.158 4.158 8 N -0.540 5.540 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.186 1.186 13 C -0.234 4.234 14 C -0.216 4.216 15 C -0.023 4.023 16 H 0.031 0.969 17 C -0.148 4.148 18 C -0.148 4.148 19 C -0.071 4.071 20 N -0.284 5.284 21 C -0.120 4.120 22 C -0.052 4.052 23 H 0.014 0.986 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.811 -11.817 -4.244 14.285 hybrid contribution -1.059 0.788 0.162 1.330 sum 5.753 -11.029 -4.082 13.092 Atomic orbital electron populations 1.22811 0.87641 0.98379 1.03168 1.61952 1.08155 1.13868 1.40632 1.21408 0.95734 0.87381 0.97402 1.18923 0.90824 0.95543 0.91304 1.20467 0.91250 1.39229 1.01645 0.93135 1.25419 1.01185 0.94668 0.94532 1.70041 1.35131 1.34356 1.14459 0.86151 0.82142 0.79109 0.77589 1.20073 1.21484 1.18605 1.22796 1.03729 0.92111 1.04749 1.22768 1.02074 0.99194 0.97612 1.21593 0.94494 0.94946 0.91286 0.96906 1.21670 0.99923 0.93724 0.99499 1.21571 0.94649 1.00632 0.97929 1.22169 0.95652 0.88251 1.01059 1.61886 1.09690 1.13347 1.43489 1.22381 0.85876 1.02167 1.01624 1.21917 0.94057 0.97508 0.91686 0.98592 0.92654 0.88730 0.93621 0.95303 0.93326 0.91103 0.91758 0.90808 0.89904 0.91611 0.92052 0.89006 0.92025 0.94685 0.88915 0.89656 0.91825 0.95166 0.92165 0.94686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.23 7.84 127.69 1.00 2.24 16 2 N -0.52 -22.24 4.61 -896.75 -4.13 -26.38 16 3 C 0.11 5.10 4.59 86.30 0.40 5.49 16 4 C 0.03 1.71 1.76 -52.93 -0.09 1.61 16 5 C -0.49 -25.83 6.00 25.60 0.15 -25.68 16 6 H 0.05 2.71 7.83 -2.91 -0.02 2.68 16 7 C 0.04 2.25 3.32 84.65 0.28 2.53 16 8 N -0.90 -50.26 11.48 21.45 0.25 -50.01 16 9 Si 0.92 42.04 29.02 68.60 1.99 44.03 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 13 C -0.20 -9.05 9.95 30.62 0.30 -8.74 16 14 C -0.18 -7.76 9.94 30.62 0.30 -7.46 16 15 C 0.09 3.11 2.10 44.97 0.09 3.20 16 16 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 17 C -0.11 -3.28 4.88 30.68 0.15 -3.13 16 18 C -0.11 -2.55 6.09 30.65 0.19 -2.36 16 19 C 0.06 1.25 5.46 86.33 0.47 1.72 16 20 N -0.56 -15.04 4.91 -922.54 -4.53 -19.57 16 21 C 0.03 0.58 9.62 127.69 1.23 1.81 16 22 C 0.08 2.48 4.53 86.32 0.39 2.87 16 23 H 0.00 -0.23 7.36 -2.39 -0.02 -0.25 16 24 H 0.05 2.14 5.66 -2.39 -0.01 2.13 16 25 H 0.09 4.63 4.11 -2.39 -0.01 4.62 16 26 H 0.05 2.01 5.72 -2.39 -0.01 2.00 16 27 H 0.03 1.56 6.33 -2.39 -0.02 1.55 16 28 H 0.26 13.98 8.32 -92.71 -0.77 13.20 16 29 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 1.86 6.24 -2.39 -0.01 1.85 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.39 8.02 -2.39 -0.02 1.37 16 41 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.06 2.11 6.10 -2.38 -0.01 2.09 16 43 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -57.13 318.93 -0.60 -57.73 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.96 Total: 20.08 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 4.87 Total: -25.89 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -8.42 Total: -95.96 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.99 Total: 44.03 kcal Total: -57.13 -0.60 -57.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.289 kcal (2) G-P(sol) polarization free energy of solvation -57.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds