Wall clock time and date at job start Mon Mar 30 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 110.99876 * 2 1 4 4 C 1.46894 * 111.00449 * 123.95481 * 2 1 3 5 5 C 1.53001 * 109.47505 * 163.52160 * 4 2 1 6 6 H 1.09002 * 110.36665 * 52.90739 * 5 4 2 7 7 C 1.54380 * 110.51193 * 290.49675 * 5 4 2 8 8 C 1.54262 * 105.06340 * 217.31892 * 7 5 4 9 9 C 1.54378 * 105.05651 * 359.97438 * 8 7 5 10 10 N 1.48554 * 110.41366 * 175.26185 * 5 4 2 11 11 C 1.46897 * 111.00103 * 277.93647 * 10 5 4 12 12 C 1.53009 * 109.47129 * 167.39671 * 11 10 5 13 13 C 1.50706 * 115.54559 * 302.42894 * 12 11 10 14 14 H 1.08003 * 119.99657 * 90.83066 * 13 12 11 15 15 C 1.37877 * 120.00154 * 270.82133 * 13 12 11 16 16 N 1.31510 * 119.99906 * 182.15664 * 15 13 12 17 17 Si 1.86799 * 119.99813 * 2.16611 * 15 13 12 18 18 H 1.48501 * 109.46852 * 265.65286 * 17 15 13 19 19 H 1.48498 * 109.47486 * 25.65426 * 17 15 13 20 20 H 1.48499 * 109.46997 * 145.65475 * 17 15 13 21 21 C 1.52997 * 117.49876 * 88.10031 * 12 11 10 22 22 C 1.52998 * 117.49880 * 156.76292 * 12 11 10 23 23 H 1.08992 * 109.47118 * 296.04129 * 1 2 3 24 24 H 1.08994 * 109.47635 * 56.04783 * 1 2 3 25 25 H 1.09004 * 109.46613 * 176.04273 * 1 2 3 26 26 H 1.09004 * 109.47335 * 190.69706 * 3 2 1 27 27 H 1.09005 * 109.47014 * 310.69633 * 3 2 1 28 28 H 1.09003 * 109.47447 * 70.69276 * 3 2 1 29 29 H 1.09006 * 109.47316 * 43.52190 * 4 2 1 30 30 H 1.09000 * 109.47081 * 283.52210 * 4 2 1 31 31 H 1.09006 * 110.32372 * 336.21082 * 7 5 4 32 32 H 1.09000 * 110.32947 * 98.31509 * 7 5 4 33 33 H 1.09000 * 110.32787 * 118.89265 * 8 7 5 34 34 H 1.08998 * 110.32197 * 241.00375 * 8 7 5 35 35 H 1.09002 * 110.41509 * 265.07757 * 9 8 7 36 36 H 1.09001 * 110.41354 * 142.63763 * 9 8 7 37 37 H 1.08992 * 109.47099 * 47.39881 * 11 10 5 38 38 H 1.08998 * 109.47071 * 287.39028 * 11 10 5 39 39 H 0.97000 * 119.99811 * 179.97438 * 16 15 13 40 40 H 1.08999 * 117.49549 * 215.00072 * 21 12 11 41 41 H 1.08999 * 117.50200 * 0.02562 * 21 12 11 42 42 H 1.09000 * 117.50015 * 359.97339 * 22 12 11 43 43 H 1.08994 * 117.49692 * 144.97469 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4696 -1.0944 0.8927 6 1 4.0267 -0.1871 0.6588 7 6 3.6122 -2.1231 -0.2495 8 6 4.7766 -3.0396 0.1794 9 6 5.2400 -2.4870 1.5443 10 7 4.0541 -1.7697 2.0798 11 6 4.4483 -0.7905 3.1015 12 6 4.7472 -1.5163 4.4149 13 6 3.6190 -2.3472 4.9697 14 1 3.5322 -3.3892 4.6992 15 6 2.6977 -1.7773 5.8226 16 7 1.7380 -2.5126 6.3401 17 14 2.8126 0.0391 6.2427 18 1 3.5773 0.2079 7.5045 19 1 3.5057 0.7586 5.1440 20 1 1.4463 0.5950 6.4138 21 6 6.1733 -2.0266 4.6314 22 6 5.6663 -0.8142 5.4166 23 1 -0.3633 0.4511 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0683 1.3488 -0.1908 27 1 1.4999 1.9508 -0.7792 28 1 1.8084 1.8325 0.9699 29 1 1.4301 -1.6916 1.2452 30 1 1.9014 -0.1747 2.0484 31 1 2.6943 -2.7016 -0.3548 32 1 3.8505 -1.6187 -1.1859 33 1 4.4303 -4.0677 0.2846 34 1 5.5876 -2.9863 -0.5470 35 1 6.0741 -1.7978 1.4122 36 1 5.5222 -3.3035 2.2091 37 1 3.6366 -0.0797 3.2558 38 1 5.3396 -0.2581 2.7697 39 1 1.0901 -2.1117 6.9405 40 1 6.2954 -2.9633 5.1750 41 1 6.8986 -1.8450 3.8383 42 1 6.0584 0.1644 5.1397 43 1 5.4548 -0.9532 6.4767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:05 Heat of formation + Delta-G solvation = 40.862861 kcal Electronic energy + Delta-G solvation = -20047.205037 eV Core-core repulsion = 17321.362680 eV Total energy + Delta-G solvation = -2725.842357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.09017 -37.04752 -36.07107 -31.94701 -31.20120 -29.92304 -27.48776 -26.14118 -25.40507 -24.46569 -21.85591 -21.60019 -20.50633 -19.41064 -18.82205 -16.32049 -15.67873 -15.30412 -15.07451 -14.82249 -14.63313 -13.85635 -13.77083 -13.29608 -13.07458 -12.89156 -12.56801 -12.32356 -12.12502 -11.72254 -11.59521 -11.55742 -11.14521 -11.01277 -10.96784 -10.77848 -10.45505 -10.35395 -10.32338 -10.09586 -9.95762 -9.47809 -8.91650 -8.45343 -8.39490 -8.20024 -7.65606 -5.96511 -3.94145 3.32822 3.42246 3.46059 3.97422 4.51609 4.65734 5.00400 5.05254 5.20252 5.25317 5.29606 5.36079 5.42345 5.50147 5.58430 5.65366 5.76948 5.88260 5.90230 5.95277 5.97320 5.99265 6.04450 6.11194 6.20311 6.24308 6.26667 6.36965 6.41397 6.47568 6.50850 6.60234 6.65326 6.78017 7.11367 7.16440 7.17568 7.23217 7.56839 7.81838 7.92930 8.68698 9.10871 9.67618 11.16375 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.008833 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.053006 B = 3169.158857 C = 4015.457143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.023 3.977 4 C 0.070 3.930 5 C 0.067 3.933 6 H 0.040 0.960 7 C -0.102 4.102 8 C -0.127 4.127 9 C 0.041 3.959 10 N -0.475 5.475 11 C 0.086 3.914 12 C 0.015 3.985 13 C -0.453 4.453 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.904 5.904 17 Si 0.875 3.125 18 H -0.282 1.282 19 H -0.262 1.262 20 H -0.297 1.297 21 C -0.183 4.183 22 C -0.206 4.206 23 H 0.024 0.976 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.009 0.991 39 H 0.260 0.740 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 5.174 -12.858 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.126 4.126 4 C -0.058 4.058 5 C -0.042 4.042 6 H 0.058 0.942 7 C -0.140 4.140 8 C -0.165 4.165 9 C -0.087 4.087 10 N -0.199 5.199 11 C -0.042 4.042 12 C 0.014 3.986 13 C -0.490 4.490 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.209 1.209 19 H -0.186 1.186 20 H -0.225 1.225 21 C -0.220 4.220 22 C -0.244 4.244 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.027 0.973 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.493 4.589 -12.899 13.917 hybrid contribution 0.327 2.147 0.868 2.339 sum 2.820 6.736 -12.031 14.074 Atomic orbital electron populations 1.22355 0.87496 1.02274 1.00089 1.61930 1.07628 1.13365 1.44135 1.22417 1.00874 0.89306 1.00001 1.22047 0.95128 0.98364 0.90278 1.22519 0.94710 0.95692 0.91255 0.94237 1.22135 0.98621 0.96413 0.96813 1.22340 0.97773 1.00066 0.96345 1.23054 0.91947 0.98509 0.95196 1.65120 1.23838 1.24193 1.06736 1.22020 0.97020 0.92731 0.92444 1.19363 0.90363 0.97344 0.91536 1.20135 1.06853 0.97156 1.24906 0.90306 1.24916 0.95129 0.97058 0.95651 1.69893 1.16362 1.35675 1.32354 0.86936 0.76377 0.87105 0.79186 1.20886 1.18646 1.22467 1.22838 0.99281 0.97517 1.02368 1.22981 1.07872 0.95052 0.98485 0.95702 0.91811 0.91245 0.91565 0.91881 0.95680 0.89710 0.94215 0.91167 0.92079 0.91277 0.92314 0.95167 0.89812 0.91664 0.97323 0.92966 0.89652 0.91468 0.91390 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.52 60.06 0.57 0.90 16 2 N -0.55 -7.70 4.84 -251.27 -1.22 -8.92 16 3 C 0.02 0.28 9.38 60.06 0.56 0.85 16 4 C 0.07 1.17 4.56 -3.83 -0.02 1.16 16 5 C 0.07 1.12 2.30 -66.07 -0.15 0.96 16 6 H 0.04 0.65 6.60 -51.93 -0.34 0.31 16 7 C -0.10 -1.47 6.43 -25.35 -0.16 -1.63 16 8 C -0.13 -1.80 7.00 -25.35 -0.18 -1.98 16 9 C 0.04 0.69 5.78 -2.17 -0.01 0.68 16 10 N -0.48 -9.24 4.76 -222.12 -1.06 -10.29 16 11 C 0.09 1.81 4.42 -3.82 -0.02 1.79 16 12 C 0.02 0.35 0.83 -155.66 -0.13 0.22 16 13 C -0.45 -12.58 9.19 -34.44 -0.32 -12.90 16 14 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 15 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 17 Si 0.87 21.99 24.88 -169.99 -4.23 17.76 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.26 -6.23 5.61 56.52 0.32 -5.91 16 20 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 21 C -0.18 -3.76 9.14 -26.69 -0.24 -4.00 16 22 C -0.21 -4.47 7.47 -26.69 -0.20 -4.67 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 25 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.07 0.82 6.89 -51.93 -0.36 0.46 16 27 H 0.06 0.67 8.00 -51.93 -0.42 0.25 16 28 H 0.02 0.33 7.97 -51.93 -0.41 -0.08 16 29 H 0.08 1.52 7.79 -51.93 -0.40 1.12 16 30 H 0.04 0.76 6.96 -51.93 -0.36 0.40 16 31 H 0.07 1.04 7.75 -51.93 -0.40 0.63 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.03 0.49 7.72 -51.93 -0.40 0.08 16 36 H 0.08 1.50 7.84 -51.93 -0.41 1.09 16 37 H 0.07 1.46 5.64 -51.93 -0.29 1.17 16 38 H 0.01 0.17 7.67 -51.93 -0.40 -0.23 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.98 7.08 -51.93 -0.37 1.62 16 LS Contribution 327.14 15.07 4.93 4.93 Total: -1.00 -29.68 327.14 -9.19 -38.88 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.00 Total: 1.22 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.39 Total: -16.62 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -1.50 Total: -46.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.23 Total: 17.76 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.68 -9.19 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.741 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds