Wall clock time and date at job start Mon Mar 30 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 110.99876 * 2 1 4 4 C 1.46894 * 111.00449 * 123.95481 * 2 1 3 5 5 C 1.53001 * 109.47505 * 163.52160 * 4 2 1 6 6 H 1.09002 * 110.36665 * 52.90739 * 5 4 2 7 7 C 1.54380 * 110.51193 * 290.49675 * 5 4 2 8 8 C 1.54262 * 105.06340 * 217.31892 * 7 5 4 9 9 C 1.54378 * 105.05651 * 359.97438 * 8 7 5 10 10 N 1.48554 * 110.41366 * 175.26185 * 5 4 2 11 11 C 1.46897 * 111.00103 * 277.93647 * 10 5 4 12 12 C 1.53009 * 109.47129 * 167.39671 * 11 10 5 13 13 C 1.50706 * 115.54559 * 302.42894 * 12 11 10 14 14 H 1.08003 * 119.99657 * 90.83066 * 13 12 11 15 15 C 1.37877 * 120.00154 * 270.82133 * 13 12 11 16 16 N 1.31510 * 119.99906 * 182.15664 * 15 13 12 17 17 Si 1.86799 * 119.99813 * 2.16611 * 15 13 12 18 18 H 1.48501 * 109.46852 * 265.65286 * 17 15 13 19 19 H 1.48498 * 109.47486 * 25.65426 * 17 15 13 20 20 H 1.48499 * 109.46997 * 145.65475 * 17 15 13 21 21 C 1.52997 * 117.49876 * 88.10031 * 12 11 10 22 22 C 1.52998 * 117.49880 * 156.76292 * 12 11 10 23 23 H 1.08992 * 109.47118 * 296.04129 * 1 2 3 24 24 H 1.08994 * 109.47635 * 56.04783 * 1 2 3 25 25 H 1.09004 * 109.46613 * 176.04273 * 1 2 3 26 26 H 1.09004 * 109.47335 * 190.69706 * 3 2 1 27 27 H 1.09005 * 109.47014 * 310.69633 * 3 2 1 28 28 H 1.09003 * 109.47447 * 70.69276 * 3 2 1 29 29 H 1.09006 * 109.47316 * 43.52190 * 4 2 1 30 30 H 1.09000 * 109.47081 * 283.52210 * 4 2 1 31 31 H 1.09006 * 110.32372 * 336.21082 * 7 5 4 32 32 H 1.09000 * 110.32947 * 98.31509 * 7 5 4 33 33 H 1.09000 * 110.32787 * 118.89265 * 8 7 5 34 34 H 1.08998 * 110.32197 * 241.00375 * 8 7 5 35 35 H 1.09002 * 110.41509 * 265.07757 * 9 8 7 36 36 H 1.09001 * 110.41354 * 142.63763 * 9 8 7 37 37 H 1.08992 * 109.47099 * 47.39881 * 11 10 5 38 38 H 1.08998 * 109.47071 * 287.39028 * 11 10 5 39 39 H 0.97000 * 119.99811 * 179.97438 * 16 15 13 40 40 H 1.08999 * 117.49549 * 215.00072 * 21 12 11 41 41 H 1.08999 * 117.50200 * 0.02562 * 21 12 11 42 42 H 1.09000 * 117.50015 * 359.97339 * 22 12 11 43 43 H 1.08994 * 117.49692 * 144.97469 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4696 -1.0944 0.8927 6 1 4.0267 -0.1871 0.6588 7 6 3.6122 -2.1231 -0.2495 8 6 4.7766 -3.0396 0.1794 9 6 5.2400 -2.4870 1.5443 10 7 4.0541 -1.7697 2.0798 11 6 4.4483 -0.7905 3.1015 12 6 4.7472 -1.5163 4.4149 13 6 3.6190 -2.3472 4.9697 14 1 3.5322 -3.3892 4.6992 15 6 2.6977 -1.7773 5.8226 16 7 1.7380 -2.5126 6.3401 17 14 2.8126 0.0391 6.2427 18 1 3.5773 0.2079 7.5045 19 1 3.5057 0.7586 5.1440 20 1 1.4463 0.5950 6.4138 21 6 6.1733 -2.0266 4.6314 22 6 5.6663 -0.8142 5.4166 23 1 -0.3633 0.4511 0.9233 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0683 1.3488 -0.1908 27 1 1.4999 1.9508 -0.7792 28 1 1.8084 1.8325 0.9699 29 1 1.4301 -1.6916 1.2452 30 1 1.9014 -0.1747 2.0484 31 1 2.6943 -2.7016 -0.3548 32 1 3.8505 -1.6187 -1.1859 33 1 4.4303 -4.0677 0.2846 34 1 5.5876 -2.9863 -0.5470 35 1 6.0741 -1.7978 1.4122 36 1 5.5222 -3.3035 2.2091 37 1 3.6366 -0.0797 3.2558 38 1 5.3396 -0.2581 2.7697 39 1 1.0901 -2.1117 6.9405 40 1 6.2954 -2.9633 5.1750 41 1 6.8986 -1.8450 3.8383 42 1 6.0584 0.1644 5.1397 43 1 5.4548 -0.9532 6.4767 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:04 Heat of formation + Delta-G solvation = 20.321517 kcal Electronic energy + Delta-G solvation = -20048.095777 eV Core-core repulsion = 17321.362680 eV Total energy + Delta-G solvation = -2726.733097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46993 -38.53824 -37.43286 -34.14241 -32.58137 -31.17216 -28.49570 -28.03408 -26.76905 -26.11162 -23.34001 -22.96398 -21.83132 -20.80006 -20.61275 -18.24344 -17.01016 -16.85861 -16.58378 -16.15154 -15.96925 -15.41524 -15.04615 -14.87439 -14.63393 -14.51832 -14.19727 -13.59061 -13.33796 -13.22098 -13.01187 -12.84700 -12.60645 -12.55787 -12.31215 -12.15102 -12.04589 -11.98047 -11.81516 -11.62684 -11.40801 -11.25657 -10.85660 -10.53206 -10.20616 -9.38984 -9.07216 -8.20295 -6.21056 1.31824 1.34544 1.46353 2.39631 2.74823 3.14747 3.18269 3.54542 3.77993 3.89744 4.07946 4.18871 4.24625 4.32447 4.34075 4.42556 4.46061 4.47531 4.50391 4.58648 4.63338 4.75341 4.80377 4.83607 4.84319 4.90970 4.96568 4.98843 5.06605 5.09375 5.13910 5.18017 5.33108 5.41798 5.44615 5.53161 5.78042 5.96074 6.07584 6.24896 6.34507 6.50202 6.84926 7.43879 8.96591 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.008833 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.053006 B = 3169.158857 C = 4015.457143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.022 3.978 4 C 0.078 3.922 5 C 0.070 3.930 6 H 0.049 0.951 7 C -0.094 4.094 8 C -0.120 4.120 9 C 0.040 3.960 10 N -0.509 5.509 11 C 0.097 3.903 12 C -0.012 4.012 13 C -0.443 4.443 14 H 0.029 0.971 15 C 0.015 3.985 16 N -0.956 5.956 17 Si 0.934 3.066 18 H -0.274 1.274 19 H -0.237 1.237 20 H -0.304 1.304 21 C -0.162 4.162 22 C -0.202 4.202 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.013 0.987 29 H 0.062 0.938 30 H 0.008 0.992 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.032 0.968 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 7.230 -15.097 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.126 4.126 4 C -0.050 4.050 5 C -0.038 4.038 6 H 0.067 0.933 7 C -0.132 4.132 8 C -0.158 4.158 9 C -0.088 4.088 10 N -0.233 5.233 11 C -0.031 4.031 12 C -0.013 4.013 13 C -0.482 4.482 14 H 0.047 0.953 15 C -0.180 4.180 16 N -0.598 5.598 17 Si 0.760 3.240 18 H -0.200 1.200 19 H -0.160 1.160 20 H -0.232 1.232 21 C -0.199 4.199 22 C -0.240 4.240 23 H 0.032 0.968 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.031 0.969 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.395 6.648 -15.162 17.129 hybrid contribution -0.272 1.390 1.530 2.085 sum 4.124 8.038 -13.632 16.354 Atomic orbital electron populations 1.22444 0.86561 1.02675 1.00714 1.61976 1.08532 1.14168 1.42098 1.22493 1.01451 0.88410 1.00269 1.21877 0.95717 0.97282 0.90163 1.22531 0.93948 0.96486 0.90859 0.93291 1.22094 0.98475 0.95875 0.96791 1.22320 0.98488 0.99473 0.95498 1.23066 0.91611 0.98034 0.96042 1.65039 1.25524 1.24741 1.08031 1.21762 0.97147 0.92461 0.91745 1.19283 0.90012 0.98758 0.93254 1.20231 1.08249 0.95585 1.24096 0.95309 1.25697 0.94857 1.01548 0.95933 1.70054 1.17873 1.37819 1.34039 0.85973 0.76264 0.81920 0.79828 1.20022 1.15993 1.23199 1.22834 0.97852 0.96760 1.02450 1.23022 1.06840 0.96820 0.97284 0.96763 0.89091 0.91398 0.91105 0.89333 0.96855 0.91915 0.97385 0.92027 0.89829 0.91756 0.89280 0.93568 0.91707 0.93631 0.94969 0.93151 0.90767 0.88152 0.88424 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.52 127.69 1.22 1.79 16 2 N -0.54 -14.56 4.84 -948.87 -4.59 -19.15 16 3 C 0.02 0.50 9.38 127.69 1.20 1.70 16 4 C 0.08 2.64 4.56 86.30 0.39 3.04 16 5 C 0.07 2.23 2.30 45.06 0.10 2.33 16 6 H 0.05 1.47 6.60 -2.39 -0.02 1.46 16 7 C -0.09 -2.50 6.43 31.49 0.20 -2.30 16 8 C -0.12 -3.08 7.00 31.49 0.22 -2.86 16 9 C 0.04 1.27 5.78 86.44 0.50 1.77 16 10 N -0.51 -19.40 4.76 -856.65 -4.07 -23.47 16 11 C 0.10 3.94 4.42 86.31 0.38 4.32 16 12 C -0.01 -0.54 0.83 -52.92 -0.04 -0.58 16 13 C -0.44 -25.49 9.19 25.60 0.24 -25.26 16 14 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 15 C 0.01 0.89 5.47 84.66 0.46 1.35 16 16 N -0.96 -61.42 13.96 21.45 0.30 -61.12 16 17 Si 0.93 45.90 24.88 68.60 1.71 47.61 16 18 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.24 -10.58 5.61 99.48 0.56 -10.02 16 20 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 21 C -0.16 -6.31 9.14 30.62 0.28 -6.03 16 22 C -0.20 -8.25 7.47 30.62 0.23 -8.02 16 23 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.09 1.66 8.05 -2.39 -0.02 1.64 16 25 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 26 H 0.07 1.56 6.89 -2.38 -0.02 1.54 16 27 H 0.09 1.58 8.00 -2.38 -0.02 1.56 16 28 H 0.01 0.33 7.97 -2.39 -0.02 0.31 16 29 H 0.06 2.34 7.79 -2.38 -0.02 2.32 16 30 H 0.01 0.31 6.96 -2.39 -0.02 0.30 16 31 H 0.06 1.74 7.75 -2.38 -0.02 1.72 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.31 7.72 -2.39 -0.02 1.29 16 36 H 0.06 2.27 7.84 -2.39 -0.02 2.25 16 37 H 0.05 1.99 5.64 -2.39 -0.01 1.98 16 38 H 0.03 1.15 7.67 -2.39 -0.02 1.13 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.07 3.04 8.14 -2.39 -0.02 3.03 16 41 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.07 3.13 7.08 -2.39 -0.02 3.11 16 Total: -1.00 -66.85 327.14 -0.49 -67.34 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.79 Total: 17.55 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 5.38 Total: -28.75 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -8.37 Total: -103.75 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.71 Total: 47.61 kcal Total: -66.85 -0.49 -67.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.662 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds