Wall clock time and date at job start Mon Mar 30 2020 04:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00101 * 2 1 4 4 C 1.46898 * 111.00040 * 123.95940 * 2 1 3 5 5 C 1.53008 * 109.46962 * 169.99805 * 4 2 1 6 6 H 1.09004 * 110.42105 * 67.30689 * 5 4 2 7 7 C 1.54904 * 110.37388 * 189.62385 * 5 4 2 8 8 C 1.55133 * 101.65355 * 155.90151 * 7 5 4 9 9 C 1.54325 * 103.01862 * 324.34306 * 8 7 5 10 10 N 1.47449 * 107.23140 * 22.28774 * 9 8 7 11 11 C 1.46900 * 110.99820 * 123.25704 * 10 9 8 12 12 C 1.52998 * 109.47095 * 75.70628 * 11 10 9 13 13 C 1.50692 * 115.55262 * 302.44281 * 12 11 10 14 14 H 1.08005 * 120.00236 * 94.08059 * 13 12 11 15 15 C 1.37879 * 120.00092 * 274.08924 * 13 12 11 16 16 N 1.31513 * 120.00267 * 182.64905 * 15 13 12 17 17 Si 1.86801 * 119.99812 * 2.91781 * 15 13 12 18 18 H 1.48505 * 109.47164 * 265.88419 * 17 15 13 19 19 H 1.48501 * 109.47063 * 25.88402 * 17 15 13 20 20 H 1.48501 * 109.47134 * 145.88858 * 17 15 13 21 21 C 1.53006 * 117.51819 * 88.14354 * 12 11 10 22 22 C 1.52997 * 59.99958 * 107.47789 * 21 12 11 23 23 H 1.09005 * 109.47069 * 296.04080 * 1 2 3 24 24 H 1.08999 * 109.47281 * 56.04188 * 1 2 3 25 25 H 1.08994 * 109.47337 * 176.05111 * 1 2 3 26 26 H 1.09000 * 109.47429 * 183.96395 * 3 2 1 27 27 H 1.09007 * 109.47098 * 303.96078 * 3 2 1 28 28 H 1.09001 * 109.47258 * 63.95272 * 3 2 1 29 29 H 1.09000 * 109.47468 * 49.99653 * 4 2 1 30 30 H 1.09001 * 109.46806 * 289.99047 * 4 2 1 31 31 H 1.09000 * 110.99141 * 37.80252 * 7 5 4 32 32 H 1.09003 * 111.02089 * 274.00858 * 7 5 4 33 33 H 1.09001 * 110.70780 * 205.96817 * 8 7 5 34 34 H 1.08996 * 110.71073 * 82.72605 * 8 7 5 35 35 H 1.08997 * 109.89152 * 262.88108 * 9 8 7 36 36 H 1.09002 * 109.88837 * 141.69129 * 9 8 7 37 37 H 1.08995 * 109.47279 * 315.70103 * 11 10 9 38 38 H 1.09001 * 109.46546 * 195.70399 * 11 10 9 39 39 H 0.96998 * 120.00463 * 180.26894 * 16 15 13 40 40 H 1.08997 * 117.49880 * 214.96928 * 21 12 11 41 41 H 1.09002 * 117.49546 * 359.97438 * 21 12 11 42 42 H 1.09002 * 117.50583 * 252.50755 * 22 21 12 43 43 H 1.09001 * 117.49706 * 107.48762 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5045 -0.9554 0.9701 6 1 4.0200 0.0008 1.0594 7 6 4.0421 -1.9582 2.0214 8 6 5.3288 -2.4788 1.3286 9 6 4.9308 -2.5149 -0.1620 10 7 3.8030 -1.5810 -0.3357 11 6 4.1135 -0.5633 -1.3485 12 6 4.0105 -1.1836 -2.7432 13 6 4.8946 -2.3787 -2.9900 14 1 4.5088 -3.3762 -2.8393 15 6 6.1961 -2.1988 -3.4082 16 7 6.9516 -3.2420 -3.6737 17 14 6.8885 -0.4735 -3.5902 18 1 6.7289 -0.0218 -4.9959 19 1 6.1574 0.4512 -2.6871 20 1 8.3298 -0.4782 -3.2326 21 6 2.6413 -1.1648 -3.4259 22 6 3.7549 -0.2390 -3.9194 23 1 -0.3633 0.4512 0.9234 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0710 27 1 1.5897 1.9163 -0.8524 28 1 1.7044 1.8723 0.9233 29 1 1.5090 -1.7407 1.1755 30 1 1.7976 -0.2248 2.0627 31 1 3.3322 -2.7687 2.1866 32 1 4.2797 -1.4533 2.9577 33 1 5.5809 -3.4778 1.6844 34 1 6.1585 -1.7905 1.4893 35 1 4.6234 -3.5232 -0.4395 36 1 5.7724 -2.1987 -0.7783 37 1 5.1254 -0.1904 -1.1905 38 1 3.4053 0.2610 -1.2642 39 1 7.8684 -3.1155 -3.9641 40 1 2.3801 -2.0169 -4.0534 41 1 1.8135 -0.7108 -2.8811 42 1 3.6599 0.8244 -3.6995 43 1 4.2263 -0.4820 -4.8716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:08 Heat of formation + Delta-G solvation = 50.212020 kcal Electronic energy + Delta-G solvation = -20549.007264 eV Core-core repulsion = 17823.570316 eV Total energy + Delta-G solvation = -2725.436948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.10573 -36.69190 -36.02245 -31.96096 -30.97262 -29.89061 -27.52518 -25.79718 -25.60659 -24.18791 -21.75669 -21.29709 -20.50593 -19.18750 -18.52351 -16.37410 -15.86108 -15.14855 -15.08304 -14.65499 -14.46713 -13.86027 -13.61047 -13.07747 -12.86563 -12.51013 -12.41419 -12.18398 -12.04898 -11.89108 -11.53281 -11.34881 -11.23771 -10.99709 -10.66017 -10.49953 -10.36176 -10.24909 -10.21556 -9.97562 -9.73226 -9.31791 -8.69901 -8.38659 -8.20033 -8.01403 -7.21524 -5.96872 -3.92564 3.35700 3.44847 3.50778 4.14226 4.53653 4.65539 5.10030 5.14182 5.27785 5.31333 5.34696 5.41599 5.51050 5.53048 5.58022 5.72061 5.81837 5.86681 5.99417 6.00892 6.01561 6.10495 6.14926 6.23249 6.34038 6.36723 6.47744 6.52567 6.72937 6.74578 6.78950 7.02438 7.04936 7.19696 7.26726 7.27306 7.37378 7.42712 7.96309 8.08295 8.19134 8.73129 9.10383 9.68078 11.15257 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.009394 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.981452 B = 2979.815788 C = 3709.129797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.525 5.525 3 C 0.018 3.982 4 C 0.077 3.923 5 C 0.070 3.930 6 H 0.041 0.959 7 C -0.121 4.121 8 C -0.148 4.148 9 C 0.058 3.942 10 N -0.490 5.490 11 C 0.085 3.915 12 C 0.015 3.985 13 C -0.462 4.462 14 H 0.077 0.923 15 C 0.071 3.929 16 N -0.904 5.904 17 Si 0.870 3.130 18 H -0.282 1.282 19 H -0.257 1.257 20 H -0.298 1.298 21 C -0.163 4.163 22 C -0.212 4.212 23 H 0.015 0.985 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.016 0.984 29 H 0.078 0.922 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.017 0.983 38 H 0.070 0.930 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 7.090 10.576 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.248 5.248 3 C -0.130 4.130 4 C -0.051 4.051 5 C -0.039 4.039 6 H 0.058 0.942 7 C -0.160 4.160 8 C -0.187 4.187 9 C -0.069 4.069 10 N -0.213 5.213 11 C -0.043 4.043 12 C 0.014 3.986 13 C -0.500 4.500 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.543 5.543 17 Si 0.698 3.302 18 H -0.208 1.208 19 H -0.181 1.181 20 H -0.225 1.225 21 C -0.200 4.200 22 C -0.250 4.250 23 H 0.033 0.967 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.576 6.534 9.893 14.633 hybrid contribution 1.020 1.815 0.720 2.203 sum -7.556 8.349 10.614 15.474 Atomic orbital electron populations 1.22334 0.87950 1.02108 0.99512 1.61869 1.06836 1.12639 1.43412 1.22553 1.01466 0.89369 0.99642 1.22099 0.95320 0.97951 0.89729 1.22549 0.94276 0.96062 0.91045 0.94154 1.22669 0.97723 0.98639 0.96954 1.22923 0.96741 1.00748 0.98271 1.22873 0.93635 0.98173 0.92239 1.63157 1.38287 1.16294 1.03558 1.22181 0.96916 0.92897 0.92287 1.19251 0.95587 0.95819 0.87923 1.20315 0.94694 0.91816 1.43172 0.90494 1.24934 0.96962 0.95999 0.94995 1.69904 1.08184 1.29332 1.46888 0.87010 0.77403 0.86763 0.78993 1.20818 1.18113 1.22521 1.22636 0.92563 1.00601 1.04238 1.22942 1.06392 0.94866 1.00762 0.96676 0.91778 0.91362 0.90857 0.91667 0.96510 0.90375 0.95802 0.90935 0.92101 0.91517 0.92542 0.90906 0.90526 0.96467 0.91191 0.92979 0.90634 0.90327 0.91760 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.57 60.06 0.57 0.93 16 2 N -0.52 -7.53 3.99 -251.26 -1.00 -8.53 16 3 C 0.02 0.24 8.10 60.06 0.49 0.72 16 4 C 0.08 1.08 4.74 -3.82 -0.02 1.06 16 5 C 0.07 1.11 2.33 -66.18 -0.15 0.95 16 6 H 0.04 0.65 6.65 -51.93 -0.35 0.31 16 7 C -0.12 -1.70 6.49 -24.60 -0.16 -1.86 16 8 C -0.15 -2.39 6.94 -24.91 -0.17 -2.57 16 9 C 0.06 1.19 5.23 -2.83 -0.01 1.18 16 10 N -0.49 -9.54 4.63 -223.37 -1.03 -10.58 16 11 C 0.08 1.79 4.00 -3.83 -0.02 1.78 16 12 C 0.02 0.36 1.06 -155.66 -0.16 0.20 16 13 C -0.46 -12.62 6.60 -34.44 -0.23 -12.85 16 14 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 15 C 0.07 2.02 5.03 -17.82 -0.09 1.93 16 16 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 17 Si 0.87 21.87 25.11 -169.99 -4.27 17.61 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 19 H -0.26 -6.14 5.40 56.52 0.31 -5.84 16 20 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 21 C -0.16 -3.53 9.94 -26.73 -0.27 -3.79 16 22 C -0.21 -4.70 7.70 -26.73 -0.21 -4.90 16 23 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.06 0.73 8.12 -51.93 -0.42 0.30 16 25 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 26 H 0.07 1.07 4.91 -51.93 -0.25 0.81 16 27 H 0.06 0.82 8.12 -51.92 -0.42 0.39 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 30 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.07 0.98 7.97 -51.93 -0.41 0.56 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.08 1.83 5.79 -51.93 -0.30 1.53 16 37 H 0.02 0.40 5.83 -51.93 -0.30 0.09 16 38 H 0.07 1.36 3.73 -51.93 -0.19 1.16 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.08 1.88 7.45 -51.93 -0.39 1.50 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -29.19 317.45 -8.93 -38.12 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.76 Total: 2.33 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.43 Total: -17.23 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.26 Total: -45.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.27 Total: 17.61 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.19 -8.93 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.334 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds