Wall clock time and date at job start Mon Mar 30 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 111.00101 * 2 1 4 4 C 1.46898 * 111.00040 * 123.95940 * 2 1 3 5 5 C 1.53008 * 109.46962 * 169.99805 * 4 2 1 6 6 H 1.09004 * 110.42105 * 67.30689 * 5 4 2 7 7 C 1.54904 * 110.37388 * 189.62385 * 5 4 2 8 8 C 1.55133 * 101.65355 * 155.90151 * 7 5 4 9 9 C 1.54325 * 103.01862 * 324.34306 * 8 7 5 10 10 N 1.47449 * 107.23140 * 22.28774 * 9 8 7 11 11 C 1.46900 * 110.99820 * 123.25704 * 10 9 8 12 12 C 1.52998 * 109.47095 * 75.70628 * 11 10 9 13 13 C 1.50692 * 115.55262 * 302.44281 * 12 11 10 14 14 H 1.08005 * 120.00236 * 94.08059 * 13 12 11 15 15 C 1.37879 * 120.00092 * 274.08924 * 13 12 11 16 16 N 1.31513 * 120.00267 * 182.64905 * 15 13 12 17 17 Si 1.86801 * 119.99812 * 2.91781 * 15 13 12 18 18 H 1.48505 * 109.47164 * 265.88419 * 17 15 13 19 19 H 1.48501 * 109.47063 * 25.88402 * 17 15 13 20 20 H 1.48501 * 109.47134 * 145.88858 * 17 15 13 21 21 C 1.53006 * 117.51819 * 88.14354 * 12 11 10 22 22 C 1.52997 * 59.99958 * 107.47789 * 21 12 11 23 23 H 1.09005 * 109.47069 * 296.04080 * 1 2 3 24 24 H 1.08999 * 109.47281 * 56.04188 * 1 2 3 25 25 H 1.08994 * 109.47337 * 176.05111 * 1 2 3 26 26 H 1.09000 * 109.47429 * 183.96395 * 3 2 1 27 27 H 1.09007 * 109.47098 * 303.96078 * 3 2 1 28 28 H 1.09001 * 109.47258 * 63.95272 * 3 2 1 29 29 H 1.09000 * 109.47468 * 49.99653 * 4 2 1 30 30 H 1.09001 * 109.46806 * 289.99047 * 4 2 1 31 31 H 1.09000 * 110.99141 * 37.80252 * 7 5 4 32 32 H 1.09003 * 111.02089 * 274.00858 * 7 5 4 33 33 H 1.09001 * 110.70780 * 205.96817 * 8 7 5 34 34 H 1.08996 * 110.71073 * 82.72605 * 8 7 5 35 35 H 1.08997 * 109.89152 * 262.88108 * 9 8 7 36 36 H 1.09002 * 109.88837 * 141.69129 * 9 8 7 37 37 H 1.08995 * 109.47279 * 315.70103 * 11 10 9 38 38 H 1.09001 * 109.46546 * 195.70399 * 11 10 9 39 39 H 0.96998 * 120.00463 * 180.26894 * 16 15 13 40 40 H 1.08997 * 117.49880 * 214.96928 * 21 12 11 41 41 H 1.09002 * 117.49546 * 359.97438 * 21 12 11 42 42 H 1.09002 * 117.50583 * 252.50755 * 22 21 12 43 43 H 1.09001 * 117.49706 * 107.48762 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5045 -0.9554 0.9701 6 1 4.0200 0.0008 1.0594 7 6 4.0421 -1.9582 2.0214 8 6 5.3288 -2.4788 1.3286 9 6 4.9308 -2.5149 -0.1620 10 7 3.8030 -1.5810 -0.3357 11 6 4.1135 -0.5633 -1.3485 12 6 4.0105 -1.1836 -2.7432 13 6 4.8946 -2.3787 -2.9900 14 1 4.5088 -3.3762 -2.8393 15 6 6.1961 -2.1988 -3.4082 16 7 6.9516 -3.2420 -3.6737 17 14 6.8885 -0.4735 -3.5902 18 1 6.7289 -0.0218 -4.9959 19 1 6.1574 0.4512 -2.6871 20 1 8.3298 -0.4782 -3.2326 21 6 2.6413 -1.1648 -3.4259 22 6 3.7549 -0.2390 -3.9194 23 1 -0.3633 0.4512 0.9234 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 3.0828 1.3432 -0.0710 27 1 1.5897 1.9163 -0.8524 28 1 1.7044 1.8723 0.9233 29 1 1.5090 -1.7407 1.1755 30 1 1.7976 -0.2248 2.0627 31 1 3.3322 -2.7687 2.1866 32 1 4.2797 -1.4533 2.9577 33 1 5.5809 -3.4778 1.6844 34 1 6.1585 -1.7905 1.4893 35 1 4.6234 -3.5232 -0.4395 36 1 5.7724 -2.1987 -0.7783 37 1 5.1254 -0.1904 -1.1905 38 1 3.4053 0.2610 -1.2642 39 1 7.8684 -3.1155 -3.9641 40 1 2.3801 -2.0169 -4.0534 41 1 1.8135 -0.7108 -2.8811 42 1 3.6599 0.8244 -3.6995 43 1 4.2263 -0.4820 -4.8716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:07 Heat of formation + Delta-G solvation = 30.453079 kcal Electronic energy + Delta-G solvation = -20549.864076 eV Core-core repulsion = 17823.570316 eV Total energy + Delta-G solvation = -2726.293759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.50215 -38.22058 -37.36814 -34.14565 -32.43169 -31.14987 -28.50420 -27.83305 -26.91112 -25.74471 -23.11602 -22.86866 -21.91685 -20.56661 -20.35329 -18.25761 -17.34316 -16.62227 -16.35774 -16.20534 -15.67255 -15.40119 -15.02551 -14.73644 -14.47433 -14.31972 -13.96678 -13.55443 -13.11462 -13.02560 -12.99718 -12.79626 -12.60330 -12.47868 -12.37399 -12.01707 -11.91282 -11.78717 -11.60166 -11.58222 -11.43168 -11.16017 -10.67858 -10.45001 -10.07291 -9.03287 -8.76630 -8.19076 -6.16862 1.33346 1.36672 1.48864 2.41758 3.05914 3.17291 3.22082 3.62116 3.86882 3.95901 4.18085 4.32480 4.32648 4.36660 4.44595 4.53437 4.57011 4.62447 4.65601 4.75516 4.82846 4.84375 4.90924 4.96395 4.97308 4.99582 5.01730 5.14030 5.15190 5.17065 5.26819 5.33075 5.44303 5.50042 5.56995 5.63905 5.88778 6.25674 6.29717 6.44495 6.55182 6.68057 6.88613 7.45955 8.97026 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.009394 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.981452 B = 2979.815788 C = 3709.129797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.551 5.551 3 C 0.020 3.980 4 C 0.084 3.916 5 C 0.067 3.933 6 H 0.043 0.957 7 C -0.109 4.109 8 C -0.142 4.142 9 C 0.062 3.938 10 N -0.500 5.500 11 C 0.098 3.902 12 C -0.010 4.010 13 C -0.446 4.446 14 H 0.027 0.973 15 C 0.020 3.980 16 N -0.953 5.953 17 Si 0.924 3.076 18 H -0.278 1.278 19 H -0.233 1.233 20 H -0.302 1.302 21 C -0.147 4.147 22 C -0.204 4.204 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.034 0.966 37 H -0.003 1.003 38 H 0.094 0.906 39 H 0.259 0.741 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 9.767 12.449 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.275 5.275 3 C -0.128 4.128 4 C -0.045 4.045 5 C -0.042 4.042 6 H 0.061 0.939 7 C -0.148 4.148 8 C -0.181 4.181 9 C -0.066 4.066 10 N -0.223 5.223 11 C -0.030 4.030 12 C -0.011 4.011 13 C -0.485 4.485 14 H 0.046 0.954 15 C -0.176 4.176 16 N -0.595 5.595 17 Si 0.750 3.250 18 H -0.204 1.204 19 H -0.156 1.156 20 H -0.230 1.230 21 C -0.184 4.184 22 C -0.241 4.241 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.241 9.226 11.780 18.132 hybrid contribution 1.451 0.877 0.138 1.701 sum -8.789 10.102 11.918 17.926 Atomic orbital electron populations 1.22314 0.86522 1.02148 1.00563 1.61832 1.08333 1.13386 1.43942 1.22506 1.00351 0.89055 1.00891 1.22007 0.93488 0.98173 0.90804 1.22717 0.95958 0.96220 0.89314 0.93939 1.22657 0.96133 0.98550 0.97422 1.22846 0.98262 1.01816 0.95175 1.22588 0.92539 0.96670 0.94784 1.63091 1.37370 1.16275 1.05579 1.22011 0.96418 0.93492 0.91047 1.19286 0.96353 0.95420 0.90090 1.20313 0.95193 0.91358 1.41595 0.95441 1.25614 0.97330 0.99490 0.95132 1.70050 1.08559 1.31675 1.49198 0.86124 0.76573 0.82859 0.79400 1.20363 1.15643 1.22993 1.22590 0.92411 1.00082 1.03316 1.22956 1.05797 0.96251 0.99133 0.95105 0.91250 0.91801 0.92417 0.91040 0.94766 0.90890 0.93387 0.90193 0.88930 0.90494 0.92063 0.94223 0.94726 0.98480 0.88770 0.93168 0.91996 0.87987 0.88824 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.57 127.69 1.22 1.88 16 2 N -0.55 -13.94 3.99 -948.84 -3.79 -17.73 16 3 C 0.02 0.45 8.10 127.69 1.03 1.48 16 4 C 0.08 2.05 4.74 86.31 0.41 2.46 16 5 C 0.07 1.93 2.33 45.39 0.11 2.03 16 6 H 0.04 1.24 6.65 -2.38 -0.02 1.22 16 7 C -0.11 -2.74 6.49 31.98 0.21 -2.54 16 8 C -0.14 -4.46 6.94 31.77 0.22 -4.24 16 9 C 0.06 2.63 5.23 86.65 0.45 3.08 16 10 N -0.50 -19.17 4.63 -860.62 -3.98 -23.15 16 11 C 0.10 4.03 4.00 86.30 0.35 4.37 16 12 C -0.01 -0.48 1.06 -52.93 -0.06 -0.54 16 13 C -0.45 -25.42 6.60 25.60 0.17 -25.25 16 14 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 15 C 0.02 1.17 5.03 84.66 0.43 1.60 16 16 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 17 Si 0.92 45.65 25.11 68.60 1.72 47.37 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.23 -10.56 5.40 99.48 0.54 -10.02 16 20 H -0.30 -15.07 7.11 99.48 0.71 -14.37 16 21 C -0.15 -6.15 9.94 30.60 0.30 -5.85 16 22 C -0.20 -8.64 7.70 30.59 0.24 -8.40 16 23 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 24 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 25 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 26 H 0.06 1.48 4.91 -2.39 -0.01 1.47 16 27 H 0.07 1.51 8.12 -2.38 -0.02 1.49 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 1.87 7.95 -2.39 -0.02 1.85 16 30 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 31 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.73 5.79 -2.39 -0.01 1.71 16 37 H 0.00 -0.13 5.83 -2.39 -0.01 -0.14 16 38 H 0.09 3.40 3.73 -2.39 -0.01 3.39 16 39 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 42 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.06 2.96 7.45 -2.39 -0.02 2.94 16 Total: -1.00 -65.92 317.45 0.11 -65.80 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.78 Total: 17.66 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 5.08 Total: -29.90 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -7.47 Total: -100.93 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.72 Total: 47.37 kcal Total: -65.92 0.11 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.257 kcal (2) G-P(sol) polarization free energy of solvation -65.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds