Wall clock time and date at job start Mon Mar 30 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00000 * 2 1 4 4 C 1.52998 * 109.46999 * 75.10988 * 3 2 1 5 5 H 1.08998 * 110.62654 * 53.78595 * 4 3 2 6 6 C 1.55147 * 110.70502 * 177.07665 * 4 3 2 7 7 C 1.54901 * 101.65308 * 154.03568 * 6 4 3 8 8 N 1.47842 * 104.79774 * 322.93483 * 7 6 4 9 9 C 1.46898 * 111.00103 * 146.36600 * 8 7 6 10 10 C 1.47446 * 108.56821 * 24.09088 * 8 7 6 11 11 C 1.46905 * 111.00002 * 236.04735 * 2 1 3 12 12 C 1.52994 * 109.46853 * 287.42376 * 11 2 1 13 13 C 1.50701 * 115.55199 * 298.74673 * 12 11 2 14 14 H 1.07998 * 119.99861 * 99.49241 * 13 12 11 15 15 C 1.37882 * 120.00117 * 279.21866 * 13 12 11 16 16 N 1.31511 * 119.99954 * 355.40884 * 15 13 12 17 17 Si 1.86797 * 120.00012 * 175.41241 * 15 13 12 18 18 H 1.48504 * 109.46990 * 59.99799 * 17 15 13 19 19 H 1.48501 * 109.47292 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47075 * 300.00220 * 17 15 13 21 21 C 1.53002 * 117.51966 * 84.45389 * 12 11 2 22 22 C 1.53003 * 60.00235 * 107.48016 * 21 12 11 23 23 H 1.09004 * 109.46833 * 176.41624 * 1 2 3 24 24 H 1.09001 * 109.47357 * 296.40951 * 1 2 3 25 25 H 1.08999 * 109.47479 * 56.41829 * 1 2 3 26 26 H 1.08994 * 109.47236 * 195.11686 * 3 2 1 27 27 H 1.09010 * 109.46617 * 315.11198 * 3 2 1 28 28 H 1.08997 * 110.98999 * 272.13308 * 6 4 3 29 29 H 1.09002 * 110.98902 * 35.94445 * 6 4 3 30 30 H 1.09000 * 110.37406 * 204.09675 * 7 6 4 31 31 H 1.09001 * 110.37096 * 81.75738 * 7 6 4 32 32 H 1.09000 * 109.46803 * 299.14539 * 9 8 7 33 33 H 1.08990 * 109.47757 * 59.15410 * 9 8 7 34 34 H 1.09007 * 109.46940 * 179.15889 * 9 8 7 35 35 H 1.09000 * 109.88689 * 239.60254 * 10 8 7 36 36 H 1.08996 * 110.01933 * 118.49867 * 10 8 7 37 37 H 1.09004 * 109.46715 * 167.42413 * 11 2 1 38 38 H 1.09000 * 109.47331 * 47.42406 * 11 2 1 39 39 H 0.96998 * 120.00204 * 184.99944 * 16 15 13 40 40 H 1.08998 * 117.49714 * 214.96862 * 21 12 11 41 41 H 1.08997 * 117.49590 * 359.97438 * 21 12 11 42 42 H 1.08997 * 117.49502 * 252.51487 * 22 21 12 43 43 H 1.08999 * 117.50384 * 107.48861 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8321 1.9804 1.3941 5 1 2.2819 1.3362 2.1495 6 6 2.4460 3.4043 1.4460 7 6 1.6258 4.0571 2.5864 8 7 0.2586 3.5184 2.4245 9 6 -0.4001 3.3537 3.7272 10 6 0.3425 2.2323 1.7084 11 6 1.9954 -0.7660 -1.1376 12 6 1.7749 -2.2599 -0.8923 13 6 2.4612 -2.8272 0.3236 14 1 1.9050 -2.9761 1.2373 15 6 3.7977 -3.1614 0.2678 16 7 4.4513 -3.0705 -0.8697 17 14 4.6800 -3.7434 1.8080 18 1 4.0236 -4.9734 2.3196 19 1 6.0990 -4.0383 1.4842 20 1 4.6186 -2.6819 2.8447 21 6 0.4135 -2.8455 -1.2726 22 6 1.6474 -3.1661 -2.1186 23 1 -0.3633 -1.0257 -0.0642 24 1 -0.3634 0.4571 0.9204 25 1 -0.3634 0.5684 -0.8561 26 1 3.0518 1.3551 -0.2680 27 1 1.4458 1.9715 -0.7253 28 1 3.5051 3.3639 1.7003 29 1 2.2921 3.9304 0.5038 30 1 1.6217 5.1417 2.4781 31 1 2.0329 3.7734 3.5570 32 1 0.1691 2.6512 4.3358 33 1 -0.4488 4.3173 4.2342 34 1 -1.4095 2.9702 3.5780 35 1 -0.2282 2.2862 0.7813 36 1 -0.0450 1.4298 2.3359 37 1 3.0621 -0.5690 -1.2458 38 1 1.4766 -0.4669 -2.0484 39 1 5.3709 -3.3738 -0.9263 40 1 0.0142 -3.6409 -0.6434 41 1 -0.3255 -2.1662 -1.6974 42 1 1.7202 -2.6977 -3.1001 43 1 2.0600 -4.1723 -2.0459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259524.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:20 Heat of formation + Delta-G solvation = 41.210900 kcal Electronic energy + Delta-G solvation = -19630.429018 eV Core-core repulsion = 16904.601753 eV Total energy + Delta-G solvation = -2725.827265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27825 -37.38102 -35.13030 -32.15451 -31.75456 -29.20780 -27.37510 -26.39458 -25.24476 -24.49400 -21.28728 -21.13500 -20.86680 -19.91581 -18.88900 -16.24822 -15.93842 -15.38497 -14.65638 -14.45337 -14.33153 -14.07618 -13.86364 -13.31702 -13.23429 -12.71364 -12.51451 -12.43545 -11.81040 -11.61714 -11.39721 -11.31975 -11.24530 -10.92351 -10.84292 -10.61912 -10.53551 -10.44739 -10.37939 -10.22803 -10.06331 -9.26677 -8.79622 -8.32008 -8.29101 -7.98209 -7.38953 -5.89181 -3.91470 3.37939 3.42017 3.45905 4.06126 4.48373 4.54086 4.78391 4.88409 5.11336 5.35085 5.38127 5.39744 5.43730 5.48482 5.60295 5.66634 5.75497 5.80090 5.92674 5.93287 5.99664 6.00229 6.08143 6.15747 6.22316 6.36264 6.39511 6.51899 6.57025 6.60041 6.69432 6.78385 6.98995 7.00613 7.08075 7.17826 7.53471 7.60620 7.93490 8.02491 8.06484 8.61424 9.06299 9.70797 11.19671 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.006190 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.987300 B = 4522.496970 C = 5124.181725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.517 5.517 3 C 0.068 3.932 4 C -0.100 4.100 5 H 0.086 0.914 6 C -0.126 4.126 7 C 0.042 3.958 8 N -0.540 5.540 9 C 0.020 3.980 10 C 0.046 3.954 11 C 0.105 3.895 12 C 0.057 3.943 13 C -0.463 4.463 14 H 0.056 0.944 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.217 4.217 22 C -0.159 4.159 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.000 1.000 39 H 0.257 0.743 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 11.738 4.166 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.240 5.240 3 C -0.061 4.061 4 C -0.120 4.120 5 H 0.104 0.896 6 C -0.164 4.164 7 C -0.086 4.086 8 N -0.264 5.264 9 C -0.128 4.128 10 C -0.081 4.081 11 C -0.023 4.023 12 C 0.056 3.944 13 C -0.501 4.501 14 H 0.074 0.926 15 C -0.134 4.134 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.254 4.254 22 C -0.197 4.197 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.027 0.973 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.018 0.982 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.927 11.886 4.254 13.946 hybrid contribution 0.740 -0.588 0.506 1.072 sum -5.187 11.297 4.759 13.311 Atomic orbital electron populations 1.22819 0.88995 1.02478 0.99325 1.61726 1.06422 1.10726 1.45088 1.22054 1.00138 0.89660 0.94272 1.22381 0.95112 0.95429 0.99076 0.89609 1.22743 0.99221 0.95649 0.98807 1.23025 0.88042 0.99745 0.97787 1.63653 1.18186 1.25859 1.18737 1.22513 0.99285 1.00741 0.90303 1.23209 0.96979 0.89070 0.98859 1.21697 0.98957 0.94283 0.87333 1.18784 0.92004 0.88919 0.94701 1.20244 0.93572 1.40575 0.95712 0.92565 1.24911 0.97256 0.95660 0.95582 1.69974 1.11028 1.47308 1.24406 0.86748 0.78559 0.79018 0.84122 1.20595 1.21597 1.20283 1.23018 0.92106 1.04185 1.06080 1.22535 1.00570 1.01961 0.94616 0.90495 0.91606 0.97346 0.91075 0.95636 0.90803 0.90825 0.90641 0.93728 0.95451 0.91815 0.91524 0.90396 0.92184 0.90724 0.98208 0.93307 0.90687 0.92042 0.92332 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.21 60.06 0.49 0.70 16 2 N -0.52 -10.22 4.48 -242.91 -1.09 -11.31 16 3 C 0.07 1.14 4.62 -3.82 -0.02 1.12 16 4 C -0.10 -1.48 3.17 -88.80 -0.28 -1.76 16 5 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 6 C -0.13 -1.55 6.52 -24.59 -0.16 -1.71 16 7 C 0.04 0.48 6.73 -2.30 -0.02 0.47 16 8 N -0.54 -6.91 5.44 -239.53 -1.30 -8.21 16 9 C 0.02 0.22 9.12 60.06 0.55 0.77 16 10 C 0.05 0.64 4.56 -2.84 -0.01 0.62 16 11 C 0.10 2.35 4.85 -3.82 -0.02 2.33 16 12 C 0.06 1.39 1.28 -155.66 -0.20 1.19 16 13 C -0.46 -12.61 8.65 -34.44 -0.30 -12.90 16 14 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 15 C 0.07 1.85 5.44 -17.82 -0.10 1.75 16 16 N -0.89 -25.25 12.85 55.43 0.71 -24.54 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.22 -4.74 8.21 -26.73 -0.22 -4.96 16 22 C -0.16 -3.77 9.41 -26.73 -0.25 -4.02 16 23 H 0.08 1.44 5.21 -51.93 -0.27 1.17 16 24 H 0.07 1.03 4.33 -51.93 -0.23 0.81 16 25 H 0.01 0.14 8.02 -51.93 -0.42 -0.28 16 26 H 0.07 1.24 7.65 -51.93 -0.40 0.85 16 27 H 0.03 0.41 7.77 -51.92 -0.40 0.00 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.88 8.05 -51.93 -0.42 0.47 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.50 7.78 -51.93 -0.40 0.10 16 32 H 0.03 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.12 6.45 -51.93 -0.33 0.78 16 36 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 37 H 0.07 1.84 7.68 -51.93 -0.40 1.44 16 38 H 0.00 0.00 8.01 -51.93 -0.42 -0.42 16 39 H 0.26 7.06 8.32 -40.82 -0.34 6.73 16 40 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.06 1.22 7.41 -51.93 -0.38 0.84 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -28.20 328.72 -10.04 -38.24 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.76 Total: 0.78 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -0.53 Total: -16.40 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -1.68 Total: -44.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.20 -10.04 -38.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259524.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.450 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds