Wall clock time and date at job start Mon Mar 30 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99868 * 2 1 4 4 C 1.52999 * 109.47186 * 199.93149 * 3 2 1 5 5 H 1.08999 * 110.27560 * 298.62974 * 4 3 2 6 6 C 1.54589 * 110.31014 * 176.43069 * 4 3 2 7 7 C 1.54942 * 102.91998 * 219.13001 * 6 4 3 8 8 N 1.48529 * 103.23129 * 37.41374 * 7 6 4 9 9 C 1.46891 * 111.00030 * 200.28087 * 8 7 6 10 10 C 1.47907 * 105.81903 * 320.79459 * 8 7 6 11 11 C 1.46897 * 110.99891 * 123.95462 * 2 1 3 12 12 C 1.53007 * 109.46756 * 76.30687 * 11 2 1 13 13 C 1.50693 * 115.56087 * 79.35949 * 12 11 2 14 14 H 1.08001 * 120.00013 * 220.10079 * 13 12 11 15 15 C 1.37876 * 120.00394 * 40.10324 * 13 12 11 16 16 N 1.31513 * 119.99895 * 17.06564 * 15 13 12 17 17 Si 1.86798 * 120.00038 * 197.06666 * 15 13 12 18 18 H 1.48499 * 109.47303 * 60.00199 * 17 15 13 19 19 H 1.48505 * 109.47371 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47325 * 300.00016 * 17 15 13 21 21 C 1.52999 * 117.49926 * 293.66566 * 12 11 2 22 22 C 1.53006 * 60.03160 * 252.52587 * 21 12 11 23 23 H 1.08999 * 109.47267 * 284.67995 * 1 2 3 24 24 H 1.08998 * 109.47477 * 44.67983 * 1 2 3 25 25 H 1.08999 * 109.47486 * 164.67845 * 1 2 3 26 26 H 1.08997 * 109.47112 * 319.93425 * 3 2 1 27 27 H 1.09001 * 109.46817 * 79.93392 * 3 2 1 28 28 H 1.09002 * 110.72372 * 337.48526 * 6 4 3 29 29 H 1.09000 * 110.72578 * 100.76942 * 6 4 3 30 30 H 1.09000 * 110.66597 * 278.97165 * 7 6 4 31 31 H 1.09000 * 110.80580 * 155.91872 * 7 6 4 32 32 H 1.09000 * 109.47118 * 177.39447 * 9 8 7 33 33 H 1.08997 * 109.46939 * 297.39216 * 9 8 7 34 34 H 1.08996 * 109.47379 * 57.39410 * 9 8 7 35 35 H 1.09001 * 109.91867 * 265.98156 * 10 8 7 36 36 H 1.08998 * 110.08161 * 144.76988 * 10 8 7 37 37 H 1.08998 * 109.47415 * 316.30885 * 11 2 1 38 38 H 1.09001 * 109.47114 * 196.30089 * 11 2 1 39 39 H 0.97002 * 119.99724 * 174.98059 * 16 15 13 40 40 H 1.09000 * 117.49867 * 145.02317 * 21 12 11 41 41 H 1.09003 * 117.49784 * 0.02562 * 21 12 11 42 42 H 1.09000 * 117.49703 * 107.47776 * 22 21 12 43 43 H 1.09005 * 117.49526 * 252.47454 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4442 1.3616 -0.4917 5 1 4.0653 0.7634 0.1749 6 6 3.9891 2.8053 -0.5846 7 6 4.8358 2.7732 -1.8818 8 7 4.0444 1.8968 -2.7827 9 6 4.8823 1.3576 -3.8621 10 6 3.5173 0.8108 -1.9280 11 6 1.9954 -0.7660 1.1376 12 6 1.8593 -2.2628 0.8511 13 6 2.9101 -2.8494 -0.0559 14 1 2.6329 -3.5793 -0.8021 15 6 4.2253 -2.4544 0.0668 16 7 4.6288 -1.8420 1.1585 17 14 5.4341 -2.7889 -1.3175 18 1 4.9700 -2.1112 -2.5546 19 1 6.7734 -2.2691 -0.9416 20 1 5.5198 -4.2520 -1.5570 21 6 0.4449 -2.8387 0.7587 22 6 1.3193 -3.1510 1.9748 23 1 -0.3634 0.2604 0.9941 24 1 -0.3634 0.7307 -0.7226 25 1 -0.3634 -0.9911 -0.2715 26 1 1.3914 1.9924 -0.6615 27 1 1.9579 1.7750 1.0119 28 1 3.1719 3.5210 -0.6750 29 1 4.6135 3.0382 0.2779 30 1 5.8178 2.3411 -1.6896 31 1 4.9331 3.7728 -2.3055 32 1 4.2894 0.6831 -4.4798 33 1 5.2567 2.1772 -4.4753 34 1 5.7224 0.8124 -3.4320 35 1 4.1880 -0.0477 -1.9627 36 1 2.5227 0.5188 -2.2648 37 1 1.4319 -0.5154 2.0363 38 1 3.0465 -0.5188 1.2868 39 1 5.5679 -1.6292 1.2763 40 1 0.2743 -3.6418 0.0418 41 1 -0.3888 -2.1511 0.9015 42 1 1.0611 -2.6686 2.9175 43 1 1.7236 -4.1599 2.0581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:23 Heat of formation + Delta-G solvation = 43.377096 kcal Electronic energy + Delta-G solvation = -20369.622990 eV Core-core repulsion = 17643.889658 eV Total energy + Delta-G solvation = -2725.733332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.85588 -37.36636 -34.90114 -32.21167 -31.86751 -28.85802 -26.87215 -26.23015 -25.25729 -24.33650 -21.43716 -21.09383 -20.69386 -19.35380 -18.77049 -16.22029 -15.67004 -15.28246 -14.75739 -14.34870 -14.01534 -13.81412 -13.78795 -13.39246 -12.93968 -12.73194 -12.28780 -12.04737 -11.59652 -11.52637 -11.18940 -11.10829 -11.00592 -10.97286 -10.85355 -10.57720 -10.48667 -10.27805 -10.18412 -10.07316 -9.73672 -9.15799 -8.97754 -8.57164 -8.04437 -7.95278 -7.28921 -6.01419 -3.96107 3.28697 3.33801 3.39229 4.41358 4.44119 4.67251 5.07707 5.09086 5.25618 5.32316 5.61048 5.67838 5.71796 5.74029 5.85115 5.89485 5.99686 6.07820 6.08668 6.12769 6.13870 6.20129 6.29931 6.36549 6.45546 6.52415 6.53214 6.68221 6.76832 6.80411 6.81375 6.91787 7.03573 7.20456 7.32269 7.41320 7.41680 7.64530 7.98250 8.13139 8.18009 8.56595 8.96071 9.59626 11.03154 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.010216 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.270581 B = 2740.150598 C = 3712.601058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.522 5.522 3 C 0.072 3.928 4 C -0.091 4.091 5 H 0.089 0.911 6 C -0.119 4.119 7 C 0.034 3.966 8 N -0.528 5.528 9 C 0.017 3.983 10 C 0.055 3.945 11 C 0.085 3.915 12 C 0.072 3.928 13 C -0.467 4.467 14 H 0.056 0.944 15 C 0.080 3.920 16 N -0.880 5.880 17 Si 0.875 3.125 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.215 4.215 22 C -0.206 4.206 23 H 0.010 0.990 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.046 0.954 36 H 0.090 0.910 37 H -0.004 1.004 38 H 0.122 0.878 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 8.325 -3.504 9.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.245 5.245 3 C -0.057 4.057 4 C -0.110 4.110 5 H 0.108 0.892 6 C -0.158 4.158 7 C -0.094 4.094 8 N -0.252 5.252 9 C -0.132 4.132 10 C -0.072 4.072 11 C -0.041 4.041 12 C 0.071 3.929 13 C -0.505 4.505 14 H 0.074 0.926 15 C -0.122 4.122 16 N -0.519 5.519 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.252 4.252 22 C -0.244 4.244 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.014 0.986 38 H 0.140 0.860 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.665 8.511 -4.147 9.612 hybrid contribution 1.051 -0.447 0.459 1.232 sum -0.613 8.063 -3.687 8.888 Atomic orbital electron populations 1.22654 0.89393 1.02422 0.98254 1.61806 1.05741 1.11267 1.45712 1.22051 0.95055 0.90485 0.98081 1.21991 0.96928 0.94864 0.97264 0.89240 1.22531 0.99161 0.97563 0.96535 1.23189 0.95392 0.97625 0.93178 1.64819 1.31901 1.17931 1.10529 1.22460 0.96085 0.99276 0.95356 1.22806 1.01483 0.91809 0.91134 1.22002 1.02563 0.93045 0.86517 1.18820 0.89551 0.89770 0.94748 1.20371 0.91105 1.22791 1.16201 0.92591 1.24773 0.97800 0.94707 0.94893 1.69833 1.15364 1.42061 1.24605 0.86958 0.80188 0.78607 0.83930 1.19728 1.21502 1.20496 1.23037 0.96330 1.04019 1.01854 1.23000 1.07126 1.02135 0.92167 0.97180 0.93202 0.90332 0.91918 0.95983 0.91170 0.91539 0.94220 0.90805 0.91479 0.91991 0.95775 0.93526 0.89156 0.98637 0.86048 0.93027 0.90993 0.91032 0.92217 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.68 60.06 0.52 0.90 16 2 N -0.52 -10.58 4.00 -242.92 -0.97 -11.55 16 3 C 0.07 1.29 4.16 -3.83 -0.02 1.27 16 4 C -0.09 -1.66 3.03 -89.26 -0.27 -1.93 16 5 H 0.09 1.91 6.86 -51.93 -0.36 1.56 16 6 C -0.12 -1.78 6.61 -24.87 -0.16 -1.94 16 7 C 0.03 0.51 6.56 -1.90 -0.01 0.49 16 8 N -0.53 -8.80 5.55 -238.72 -1.33 -10.12 16 9 C 0.02 0.26 9.40 60.06 0.56 0.83 16 10 C 0.05 1.05 6.13 -2.75 -0.02 1.03 16 11 C 0.09 1.96 4.61 -3.82 -0.02 1.95 16 12 C 0.07 1.76 1.87 -155.62 -0.29 1.47 16 13 C -0.47 -12.53 8.98 -34.44 -0.31 -12.84 16 14 H 0.06 1.53 7.87 -52.49 -0.41 1.12 16 15 C 0.08 2.11 5.12 -17.82 -0.09 2.02 16 16 N -0.88 -23.57 11.13 55.43 0.62 -22.95 16 17 Si 0.87 20.80 28.63 -169.99 -4.87 15.93 16 18 H -0.27 -6.39 6.81 56.52 0.38 -6.01 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.22 -4.70 8.54 -26.73 -0.23 -4.92 16 22 C -0.21 -4.77 9.89 -26.69 -0.26 -5.03 16 23 H 0.01 0.17 7.83 -51.93 -0.41 -0.24 16 24 H 0.05 0.78 7.70 -51.93 -0.40 0.38 16 25 H 0.08 1.44 5.20 -51.93 -0.27 1.17 16 26 H 0.06 1.04 7.63 -51.93 -0.40 0.64 16 27 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 28 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.60 7.96 -51.93 -0.41 0.19 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 35 H 0.05 1.02 6.43 -51.93 -0.33 0.69 16 36 H 0.09 1.84 7.38 -51.93 -0.38 1.45 16 37 H 0.00 -0.10 7.60 -51.93 -0.39 -0.50 16 38 H 0.12 3.05 3.93 -51.93 -0.20 2.85 16 39 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 40 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.07 1.42 5.77 -51.93 -0.30 1.12 16 42 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 43 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -26.70 325.16 -9.86 -36.56 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.62 Total: 3.96 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -0.60 Total: -16.72 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -1.68 Total: -44.63 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.87 Total: 15.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.70 -9.86 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.934 kcal (2) G-P(sol) polarization free energy of solvation -26.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds