Wall clock time and date at job start Mon Mar 30 2020 04:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99868 * 2 1 4 4 C 1.52999 * 109.47186 * 199.93149 * 3 2 1 5 5 H 1.08999 * 110.27560 * 298.62974 * 4 3 2 6 6 C 1.54589 * 110.31014 * 176.43069 * 4 3 2 7 7 C 1.54942 * 102.91998 * 219.13001 * 6 4 3 8 8 N 1.48529 * 103.23129 * 37.41374 * 7 6 4 9 9 C 1.46891 * 111.00030 * 200.28087 * 8 7 6 10 10 C 1.47907 * 105.81903 * 320.79459 * 8 7 6 11 11 C 1.46897 * 110.99891 * 123.95462 * 2 1 3 12 12 C 1.53007 * 109.46756 * 76.30687 * 11 2 1 13 13 C 1.50693 * 115.56087 * 79.35949 * 12 11 2 14 14 H 1.08001 * 120.00013 * 220.10079 * 13 12 11 15 15 C 1.37876 * 120.00394 * 40.10324 * 13 12 11 16 16 N 1.31513 * 119.99895 * 17.06564 * 15 13 12 17 17 Si 1.86798 * 120.00038 * 197.06666 * 15 13 12 18 18 H 1.48499 * 109.47303 * 60.00199 * 17 15 13 19 19 H 1.48505 * 109.47371 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47325 * 300.00016 * 17 15 13 21 21 C 1.52999 * 117.49926 * 293.66566 * 12 11 2 22 22 C 1.53006 * 60.03160 * 252.52587 * 21 12 11 23 23 H 1.08999 * 109.47267 * 284.67995 * 1 2 3 24 24 H 1.08998 * 109.47477 * 44.67983 * 1 2 3 25 25 H 1.08999 * 109.47486 * 164.67845 * 1 2 3 26 26 H 1.08997 * 109.47112 * 319.93425 * 3 2 1 27 27 H 1.09001 * 109.46817 * 79.93392 * 3 2 1 28 28 H 1.09002 * 110.72372 * 337.48526 * 6 4 3 29 29 H 1.09000 * 110.72578 * 100.76942 * 6 4 3 30 30 H 1.09000 * 110.66597 * 278.97165 * 7 6 4 31 31 H 1.09000 * 110.80580 * 155.91872 * 7 6 4 32 32 H 1.09000 * 109.47118 * 177.39447 * 9 8 7 33 33 H 1.08997 * 109.46939 * 297.39216 * 9 8 7 34 34 H 1.08996 * 109.47379 * 57.39410 * 9 8 7 35 35 H 1.09001 * 109.91867 * 265.98156 * 10 8 7 36 36 H 1.08998 * 110.08161 * 144.76988 * 10 8 7 37 37 H 1.08998 * 109.47415 * 316.30885 * 11 2 1 38 38 H 1.09001 * 109.47114 * 196.30089 * 11 2 1 39 39 H 0.97002 * 119.99724 * 174.98059 * 16 15 13 40 40 H 1.09000 * 117.49867 * 145.02317 * 21 12 11 41 41 H 1.09003 * 117.49784 * 0.02562 * 21 12 11 42 42 H 1.09000 * 117.49703 * 107.47776 * 22 21 12 43 43 H 1.09005 * 117.49526 * 252.47454 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.4442 1.3616 -0.4917 5 1 4.0653 0.7634 0.1749 6 6 3.9891 2.8053 -0.5846 7 6 4.8358 2.7732 -1.8818 8 7 4.0444 1.8968 -2.7827 9 6 4.8823 1.3576 -3.8621 10 6 3.5173 0.8108 -1.9280 11 6 1.9954 -0.7660 1.1376 12 6 1.8593 -2.2628 0.8511 13 6 2.9101 -2.8494 -0.0559 14 1 2.6329 -3.5793 -0.8021 15 6 4.2253 -2.4544 0.0668 16 7 4.6288 -1.8420 1.1585 17 14 5.4341 -2.7889 -1.3175 18 1 4.9700 -2.1112 -2.5546 19 1 6.7734 -2.2691 -0.9416 20 1 5.5198 -4.2520 -1.5570 21 6 0.4449 -2.8387 0.7587 22 6 1.3193 -3.1510 1.9748 23 1 -0.3634 0.2604 0.9941 24 1 -0.3634 0.7307 -0.7226 25 1 -0.3634 -0.9911 -0.2715 26 1 1.3914 1.9924 -0.6615 27 1 1.9579 1.7750 1.0119 28 1 3.1719 3.5210 -0.6750 29 1 4.6135 3.0382 0.2779 30 1 5.8178 2.3411 -1.6896 31 1 4.9331 3.7728 -2.3055 32 1 4.2894 0.6831 -4.4798 33 1 5.2567 2.1772 -4.4753 34 1 5.7224 0.8124 -3.4320 35 1 4.1880 -0.0477 -1.9627 36 1 2.5227 0.5188 -2.2648 37 1 1.4319 -0.5154 2.0363 38 1 3.0465 -0.5188 1.2868 39 1 5.5679 -1.6292 1.2763 40 1 0.2743 -3.6418 0.0418 41 1 -0.3888 -2.1511 0.9015 42 1 1.0611 -2.6686 2.9175 43 1 1.7236 -4.1599 2.0581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:22 Heat of formation + Delta-G solvation = 27.249779 kcal Electronic energy + Delta-G solvation = -20370.322323 eV Core-core repulsion = 17643.889658 eV Total energy + Delta-G solvation = -2726.432665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27222 -39.00992 -36.52792 -34.17633 -33.27820 -30.17697 -28.55744 -27.65672 -27.21438 -25.69717 -22.96633 -22.87385 -21.95137 -21.03738 -20.45009 -18.09545 -17.09728 -16.76907 -16.54554 -15.95826 -15.63379 -15.44358 -15.18244 -14.98645 -14.48315 -14.02372 -13.87363 -13.53165 -13.23577 -13.12935 -12.87168 -12.79905 -12.57686 -12.43476 -12.31277 -12.26382 -12.01930 -11.96918 -11.71234 -11.66716 -11.25900 -11.03416 -10.87600 -10.43434 -9.88127 -9.40891 -8.84815 -8.05333 -6.04444 1.34374 1.37694 1.43976 2.41961 3.02477 3.14590 3.26172 3.75702 3.83025 3.90115 4.01577 4.35118 4.38072 4.44063 4.46826 4.50934 4.57722 4.63753 4.66426 4.71902 4.76328 4.81962 4.88258 4.90654 4.92336 4.96494 5.04139 5.11203 5.12385 5.16649 5.24541 5.34021 5.38708 5.48971 5.59253 5.66968 5.95948 6.09616 6.09942 6.43718 6.53803 6.66596 6.91034 7.52873 8.97575 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.010216 C = 0.007540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.270581 B = 2740.150598 C = 3712.601058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.538 5.538 3 C 0.076 3.924 4 C -0.090 4.090 5 H 0.052 0.948 6 C -0.111 4.111 7 C 0.034 3.966 8 N -0.528 5.528 9 C 0.016 3.984 10 C 0.065 3.935 11 C 0.099 3.901 12 C 0.045 3.955 13 C -0.487 4.487 14 H 0.040 0.960 15 C 0.054 3.946 16 N -0.893 5.893 17 Si 0.917 3.083 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.279 1.279 21 C -0.192 4.192 22 C -0.210 4.210 23 H 0.018 0.982 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.010 0.990 35 H 0.009 0.991 36 H 0.075 0.925 37 H -0.007 1.007 38 H 0.098 0.902 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 10.215 -4.184 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.052 4.052 4 C -0.110 4.110 5 H 0.070 0.930 6 C -0.149 4.149 7 C -0.094 4.094 8 N -0.252 5.252 9 C -0.133 4.133 10 C -0.063 4.063 11 C -0.029 4.029 12 C 0.044 3.956 13 C -0.525 4.525 14 H 0.058 0.942 15 C -0.146 4.146 16 N -0.531 5.531 17 Si 0.744 3.256 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.205 1.205 21 C -0.229 4.229 22 C -0.249 4.249 23 H 0.036 0.964 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.044 0.956 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.094 0.906 37 H 0.011 0.989 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.316 10.402 -4.831 11.701 hybrid contribution 1.247 -1.046 0.652 1.753 sum -1.068 9.356 -4.179 10.303 Atomic orbital electron populations 1.22653 0.87693 1.02777 0.99424 1.61729 1.07410 1.12501 1.44508 1.22066 0.94898 0.89486 0.98718 1.21910 0.96880 0.96547 0.95692 0.92985 1.22525 0.99817 0.95441 0.97120 1.23302 0.94649 0.98489 0.92910 1.64839 1.32867 1.16953 1.10582 1.22528 0.95359 1.00280 0.95115 1.22579 0.99827 0.91549 0.92370 1.21686 1.01294 0.92532 0.87368 1.18930 0.90591 0.90782 0.95322 1.20521 0.92252 1.23086 1.16598 0.94177 1.25152 0.98746 0.94689 0.96051 1.69918 1.15393 1.42430 1.25404 0.86298 0.78860 0.78241 0.82180 1.19761 1.21240 1.20458 1.23033 0.95738 1.03620 1.00476 1.22979 1.07637 1.01356 0.92914 0.96385 0.90775 0.91150 0.89850 0.95580 0.89235 0.90506 0.94954 0.87830 0.91836 0.88987 0.97116 0.97229 0.90627 0.98887 0.88428 0.93173 0.91161 0.88665 0.91137 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 8.68 127.69 1.11 1.85 16 2 N -0.54 -21.32 4.00 -922.46 -3.69 -25.01 16 3 C 0.08 2.62 4.16 86.30 0.36 2.98 16 4 C -0.09 -3.25 3.03 -9.91 -0.03 -3.28 16 5 H 0.05 2.27 6.86 -2.39 -0.02 2.26 16 6 C -0.11 -3.04 6.61 31.80 0.21 -2.83 16 7 C 0.03 0.92 6.56 86.65 0.57 1.49 16 8 N -0.53 -16.73 5.55 -909.16 -5.05 -21.78 16 9 C 0.02 0.46 9.40 127.69 1.20 1.66 16 10 C 0.06 2.47 6.13 86.45 0.53 3.00 16 11 C 0.10 4.53 4.61 86.31 0.40 4.93 16 12 C 0.04 2.19 1.87 -52.90 -0.10 2.09 16 13 C -0.49 -26.66 8.98 25.60 0.23 -26.43 16 14 H 0.04 2.26 7.87 -2.91 -0.02 2.23 16 15 C 0.05 2.91 5.12 84.65 0.43 3.35 16 16 N -0.89 -48.88 11.13 21.45 0.24 -48.64 16 17 Si 0.92 43.63 28.63 68.60 1.96 45.59 16 18 H -0.27 -12.86 6.81 99.48 0.68 -12.18 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 21 C -0.19 -8.18 8.54 30.60 0.26 -7.92 16 22 C -0.21 -9.71 9.89 30.62 0.30 -9.40 16 23 H 0.02 0.56 7.83 -2.39 -0.02 0.55 16 24 H 0.07 2.09 7.70 -2.39 -0.02 2.07 16 25 H 0.07 2.43 5.20 -2.39 -0.01 2.42 16 26 H 0.08 2.51 7.63 -2.39 -0.02 2.49 16 27 H 0.03 0.87 8.00 -2.39 -0.02 0.85 16 28 H 0.09 2.14 7.85 -2.39 -0.02 2.12 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.03 0.92 7.96 -2.39 -0.02 0.91 16 31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.01 0.32 8.00 -2.39 -0.02 0.31 16 35 H 0.01 0.42 6.43 -2.39 -0.02 0.41 16 36 H 0.08 3.07 7.38 -2.39 -0.02 3.05 16 37 H -0.01 -0.31 7.60 -2.39 -0.02 -0.33 16 38 H 0.10 5.00 3.93 -2.39 -0.01 4.99 16 39 H 0.26 13.72 8.32 -92.71 -0.77 12.95 16 40 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.10 3.59 5.77 -2.39 -0.01 3.58 16 42 H 0.07 3.06 8.09 -2.39 -0.02 3.04 16 43 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -57.63 325.16 -0.14 -57.77 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.93 Total: 20.60 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 5.47 Total: -28.53 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -8.50 Total: -95.43 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.96 Total: 45.59 kcal Total: -57.63 -0.14 -57.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.015 kcal (2) G-P(sol) polarization free energy of solvation -57.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds