Wall clock time and date at job start Mon Mar 30 2020 04:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00089 * 2 1 4 4 C 1.53007 * 109.47515 * 205.00106 * 3 2 1 5 5 C 1.52997 * 109.47077 * 300.00027 * 4 3 2 6 6 C 1.52999 * 109.47103 * 300.00087 * 5 4 3 7 7 N 1.46904 * 109.47014 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00102 * 298.94945 * 7 6 5 9 9 C 1.50705 * 109.47068 * 162.71508 * 8 7 6 10 10 H 1.08000 * 119.99774 * 354.26747 * 9 8 7 11 11 C 1.37876 * 119.99687 * 174.54014 * 9 8 7 12 12 N 1.31515 * 119.99456 * 179.72539 * 11 9 8 13 13 Si 1.86800 * 120.00388 * 359.72813 * 11 9 8 14 14 H 1.48498 * 109.46782 * 89.99805 * 13 11 9 15 15 H 1.48491 * 109.47107 * 210.00050 * 13 11 9 16 16 H 1.48497 * 109.46717 * 330.00060 * 13 11 9 17 17 C 1.46904 * 111.00068 * 174.99735 * 7 6 5 18 18 C 1.53004 * 117.49793 * 266.57439 * 17 7 6 19 19 C 1.52997 * 117.49867 * 197.95236 * 17 7 6 20 20 C 1.52997 * 109.47589 * 59.99976 * 6 5 4 21 21 C 1.53001 * 109.47203 * 84.99998 * 3 2 1 22 22 H 1.08996 * 109.47143 * 59.99855 * 1 2 3 23 23 H 1.09003 * 109.46909 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47297 * 299.99609 * 1 2 3 25 25 H 1.00905 * 111.00567 * 123.95364 * 2 1 3 26 26 H 1.09001 * 109.47534 * 325.00423 * 3 2 1 27 27 H 1.09001 * 109.47056 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.46887 * 60.00077 * 4 3 2 29 29 H 1.08991 * 109.47524 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.47167 * 59.99370 * 5 4 3 31 31 H 1.09000 * 109.47330 * 299.99573 * 6 5 4 32 32 H 1.09006 * 109.46811 * 42.71907 * 8 7 6 33 33 H 1.08991 * 109.47407 * 282.71616 * 8 7 6 34 34 H 0.97003 * 120.00077 * 179.97438 * 12 11 9 35 35 H 1.09006 * 115.54852 * 52.27763 * 17 7 6 36 36 H 1.08999 * 117.49929 * 0.02562 * 18 17 7 37 37 H 1.08997 * 117.49787 * 145.01957 * 18 17 7 38 38 H 1.08998 * 117.49534 * 214.97656 * 19 17 7 39 39 H 1.08996 * 117.50175 * 359.97438 * 19 17 7 40 40 H 1.09000 * 109.47113 * 59.99465 * 20 6 5 41 41 H 1.08998 * 109.47575 * 180.02562 * 20 6 5 42 42 H 1.09000 * 109.47692 * 179.97438 * 21 3 2 43 43 H 1.08999 * 109.47431 * 300.00577 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.3987 1.3791 -0.6097 5 6 4.3191 0.4795 0.2177 6 6 4.3845 1.0006 1.6547 7 7 5.2678 0.1365 2.4492 8 6 4.7577 -1.2403 2.4922 9 6 5.8593 -2.1707 2.9304 10 1 6.8625 -1.7941 3.0651 11 6 5.5875 -3.5038 3.1540 12 7 6.5500 -4.3168 3.5312 13 14 3.8523 -4.1552 2.9211 14 1 3.6789 -4.6110 1.5184 15 1 3.6237 -5.2957 3.8441 16 1 2.8751 -3.0766 3.2155 17 6 5.4492 0.6732 3.8046 18 6 6.6592 1.5769 4.0504 19 6 6.6384 0.1555 4.6161 20 6 2.9813 0.9930 2.2644 21 6 2.0608 1.8926 1.4370 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8307 -0.5261 0.7814 26 1 1.3397 2.0124 -0.5894 27 1 3.7891 2.3968 -0.6100 28 1 3.3521 1.0078 -1.6335 29 1 5.3187 0.4846 -0.2168 30 1 3.9285 -0.5381 0.2177 31 1 4.7751 2.0182 1.6548 32 1 4.4103 -1.5302 1.5005 33 1 3.9299 -1.2992 3.1987 34 1 6.3588 -5.2546 3.6888 35 1 4.5315 0.9019 4.3465 36 1 7.3203 1.7735 3.2064 37 1 6.5376 2.4004 4.7541 38 1 6.5032 0.0439 5.6919 39 1 7.2859 -0.5837 4.1445 40 1 2.5906 -0.0246 2.2643 41 1 3.0278 1.3647 3.2880 42 1 2.4519 2.9100 1.4371 43 1 1.0611 1.8871 1.8714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157356485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:22 Heat of formation + Delta-G solvation = 31.767125 kcal Electronic energy + Delta-G solvation = -20177.347326 eV Core-core repulsion = 17451.110548 eV Total energy + Delta-G solvation = -2726.236778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66813 -37.24804 -34.49627 -32.86738 -31.78393 -30.56339 -28.63802 -26.60140 -24.67835 -22.69003 -22.33398 -21.56827 -21.22326 -19.44783 -18.20843 -16.98492 -16.33806 -15.39222 -14.78425 -14.60559 -14.39658 -14.27756 -13.91134 -13.34192 -13.16397 -12.84901 -12.44408 -12.30607 -12.19267 -12.00806 -11.90649 -11.72440 -11.18815 -10.90304 -10.87359 -10.72561 -10.45242 -10.24158 -10.00726 -9.93210 -9.76118 -9.63625 -9.15560 -8.98246 -8.47549 -8.33817 -7.29846 -5.98856 -3.93948 3.31078 3.37771 3.38946 4.30804 4.46064 4.55763 4.61619 4.92968 4.94545 5.07452 5.31895 5.35175 5.40945 5.43790 5.48684 5.64558 5.69722 5.70315 5.74362 5.80558 5.83733 5.90305 5.99097 6.04952 6.13695 6.18524 6.22854 6.31473 6.38255 6.51487 6.68846 6.73803 6.81158 6.94253 7.02569 7.11461 7.16425 7.43824 7.72284 7.97040 8.16944 8.74146 9.12052 9.63543 11.13909 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016928 B = 0.008984 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.694910 B = 3115.811976 C = 4236.415704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.690 5.690 3 C 0.087 3.913 4 C -0.103 4.103 5 C -0.113 4.113 6 C 0.091 3.909 7 N -0.494 5.494 8 C 0.159 3.841 9 C -0.499 4.499 10 H 0.086 0.914 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.869 3.131 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.270 1.270 17 C 0.020 3.980 18 C -0.186 4.186 19 C -0.147 4.147 20 C -0.154 4.154 21 C -0.144 4.144 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.018 0.982 25 H 0.347 0.653 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.030 0.970 33 H -0.010 1.010 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.119 0.881 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.173 12.652 -4.265 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C -0.023 4.023 4 C -0.142 4.142 5 C -0.151 4.151 6 C -0.018 4.018 7 N -0.217 5.217 8 C 0.033 3.967 9 C -0.538 4.538 10 H 0.104 0.896 11 C -0.134 4.134 12 N -0.543 5.543 13 Si 0.696 3.304 14 H -0.201 1.201 15 H -0.215 1.215 16 H -0.195 1.195 17 C -0.089 4.089 18 C -0.224 4.224 19 C -0.184 4.184 20 C -0.193 4.193 21 C -0.183 4.183 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.037 0.963 25 H 0.168 0.832 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.619 12.347 -5.128 15.907 hybrid contribution -2.082 -0.247 1.377 2.508 sum -10.701 12.100 -3.751 16.583 Atomic orbital electron populations 1.22194 0.88610 1.01594 0.99847 1.60608 1.07039 1.13818 1.50824 1.21590 0.96744 0.89230 0.94763 1.21514 0.93658 0.99589 0.99429 1.21596 0.99679 1.00030 0.93755 1.21634 0.89444 0.97145 0.93564 1.61962 1.46740 1.02764 1.10186 1.20260 0.95410 0.85082 0.95911 1.21174 0.96592 0.91898 1.44095 0.89591 1.24886 0.96366 0.96919 0.95225 1.69887 1.31866 1.04681 1.47829 0.86961 0.86251 0.78751 0.78393 1.20125 1.21462 1.19457 1.22053 0.91677 1.03323 0.91805 1.22997 1.02287 0.94031 1.03057 1.23079 1.01493 0.95857 0.98005 1.22266 0.97764 0.99847 0.99452 1.22130 0.99215 1.00171 0.96815 0.92015 0.91736 0.96349 0.83164 0.91044 0.92176 0.91476 0.91285 0.90663 0.91201 0.95274 0.99271 0.92858 0.91372 0.88995 0.90336 0.90213 0.86276 0.91863 0.92074 0.91539 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.50 60.06 0.63 0.94 16 2 N -0.69 -9.40 6.12 -114.01 -0.70 -10.10 16 3 C 0.09 1.07 2.85 -67.71 -0.19 0.88 16 4 C -0.10 -1.33 5.64 -26.73 -0.15 -1.48 16 5 C -0.11 -1.80 4.82 -26.73 -0.13 -1.93 16 6 C 0.09 1.51 2.23 -67.71 -0.15 1.36 16 7 N -0.49 -9.99 4.57 -220.14 -1.01 -10.99 16 8 C 0.16 3.73 2.70 -4.98 -0.01 3.71 16 9 C -0.50 -13.78 8.60 -34.44 -0.30 -14.08 16 10 H 0.09 2.56 5.73 -52.49 -0.30 2.26 16 11 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 12 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 13 Si 0.87 21.45 27.58 -169.99 -4.69 16.76 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.27 -6.39 6.38 56.52 0.36 -6.03 16 17 C 0.02 0.39 4.53 -67.71 -0.31 0.08 16 18 C -0.19 -3.10 10.46 -26.73 -0.28 -3.38 16 19 C -0.15 -2.88 9.38 -26.73 -0.25 -3.13 16 20 C -0.15 -2.34 4.36 -26.73 -0.12 -2.46 16 21 C -0.14 -1.78 5.52 -26.73 -0.15 -1.93 16 22 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.02 0.20 7.44 -51.93 -0.39 -0.19 16 25 H 0.35 5.31 5.65 -39.29 -0.22 5.09 16 26 H 0.07 0.80 7.80 -51.93 -0.40 0.39 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.35 5.17 -51.92 -0.27 1.09 16 31 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 32 H 0.03 0.69 5.35 -51.93 -0.28 0.42 16 33 H -0.01 -0.25 5.87 -51.93 -0.30 -0.56 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 1.26 6.58 -51.93 -0.34 0.92 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.12 2.72 5.67 -51.93 -0.29 2.43 16 40 H 0.06 1.08 4.90 -51.93 -0.25 0.82 16 41 H 0.06 0.95 6.50 -51.93 -0.34 0.61 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.63 7.45 -51.93 -0.39 0.25 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -28.89 313.60 -9.57 -38.47 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.18 Total: 7.40 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -1.50 Total: -19.60 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.93 Total: -47.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.69 Total: 16.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.89 -9.57 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157356485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.233 kcal (2) G-P(sol) polarization free energy of solvation -28.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds