Wall clock time and date at job start Mon Mar 30 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00089 * 2 1 4 4 C 1.53007 * 109.47515 * 205.00106 * 3 2 1 5 5 C 1.52997 * 109.47077 * 300.00027 * 4 3 2 6 6 C 1.52999 * 109.47103 * 300.00087 * 5 4 3 7 7 N 1.46904 * 109.47014 * 179.97438 * 6 5 4 8 8 C 1.46895 * 111.00102 * 298.94945 * 7 6 5 9 9 C 1.50705 * 109.47068 * 162.71508 * 8 7 6 10 10 H 1.08000 * 119.99774 * 354.26747 * 9 8 7 11 11 C 1.37876 * 119.99687 * 174.54014 * 9 8 7 12 12 N 1.31515 * 119.99456 * 179.72539 * 11 9 8 13 13 Si 1.86800 * 120.00388 * 359.72813 * 11 9 8 14 14 H 1.48498 * 109.46782 * 89.99805 * 13 11 9 15 15 H 1.48491 * 109.47107 * 210.00050 * 13 11 9 16 16 H 1.48497 * 109.46717 * 330.00060 * 13 11 9 17 17 C 1.46904 * 111.00068 * 174.99735 * 7 6 5 18 18 C 1.53004 * 117.49793 * 266.57439 * 17 7 6 19 19 C 1.52997 * 117.49867 * 197.95236 * 17 7 6 20 20 C 1.52997 * 109.47589 * 59.99976 * 6 5 4 21 21 C 1.53001 * 109.47203 * 84.99998 * 3 2 1 22 22 H 1.08996 * 109.47143 * 59.99855 * 1 2 3 23 23 H 1.09003 * 109.46909 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47297 * 299.99609 * 1 2 3 25 25 H 1.00905 * 111.00567 * 123.95364 * 2 1 3 26 26 H 1.09001 * 109.47534 * 325.00423 * 3 2 1 27 27 H 1.09001 * 109.47056 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.46887 * 60.00077 * 4 3 2 29 29 H 1.08991 * 109.47524 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.47167 * 59.99370 * 5 4 3 31 31 H 1.09000 * 109.47330 * 299.99573 * 6 5 4 32 32 H 1.09006 * 109.46811 * 42.71907 * 8 7 6 33 33 H 1.08991 * 109.47407 * 282.71616 * 8 7 6 34 34 H 0.97003 * 120.00077 * 179.97438 * 12 11 9 35 35 H 1.09006 * 115.54852 * 52.27763 * 17 7 6 36 36 H 1.08999 * 117.49929 * 0.02562 * 18 17 7 37 37 H 1.08997 * 117.49787 * 145.01957 * 18 17 7 38 38 H 1.08998 * 117.49534 * 214.97656 * 19 17 7 39 39 H 1.08996 * 117.50175 * 359.97438 * 19 17 7 40 40 H 1.09000 * 109.47113 * 59.99465 * 20 6 5 41 41 H 1.08998 * 109.47575 * 180.02562 * 20 6 5 42 42 H 1.09000 * 109.47692 * 179.97438 * 21 3 2 43 43 H 1.08999 * 109.47431 * 300.00577 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.3987 1.3791 -0.6097 5 6 4.3191 0.4795 0.2177 6 6 4.3845 1.0006 1.6547 7 7 5.2678 0.1365 2.4492 8 6 4.7577 -1.2403 2.4922 9 6 5.8593 -2.1707 2.9304 10 1 6.8625 -1.7941 3.0651 11 6 5.5875 -3.5038 3.1540 12 7 6.5500 -4.3168 3.5312 13 14 3.8523 -4.1552 2.9211 14 1 3.6789 -4.6110 1.5184 15 1 3.6237 -5.2957 3.8441 16 1 2.8751 -3.0766 3.2155 17 6 5.4492 0.6732 3.8046 18 6 6.6592 1.5769 4.0504 19 6 6.6384 0.1555 4.6161 20 6 2.9813 0.9930 2.2644 21 6 2.0608 1.8926 1.4370 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8307 -0.5261 0.7814 26 1 1.3397 2.0124 -0.5894 27 1 3.7891 2.3968 -0.6100 28 1 3.3521 1.0078 -1.6335 29 1 5.3187 0.4846 -0.2168 30 1 3.9285 -0.5381 0.2177 31 1 4.7751 2.0182 1.6548 32 1 4.4103 -1.5302 1.5005 33 1 3.9299 -1.2992 3.1987 34 1 6.3588 -5.2546 3.6888 35 1 4.5315 0.9019 4.3465 36 1 7.3203 1.7735 3.2064 37 1 6.5376 2.4004 4.7541 38 1 6.5032 0.0439 5.6919 39 1 7.2859 -0.5837 4.1445 40 1 2.5906 -0.0246 2.2643 41 1 3.0278 1.3647 3.2880 42 1 2.4519 2.9100 1.4371 43 1 1.0611 1.8871 1.8714 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157356485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:21 Heat of formation + Delta-G solvation = 12.399152 kcal Electronic energy + Delta-G solvation = -20178.187184 eV Core-core repulsion = 17451.110548 eV Total energy + Delta-G solvation = -2727.076636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91052 -38.60261 -35.80685 -34.80950 -33.27698 -31.69591 -30.23539 -28.16309 -25.60749 -24.23177 -23.82115 -23.04783 -22.54291 -20.80693 -19.54220 -18.98293 -17.39131 -17.02304 -16.26729 -15.81786 -15.72400 -15.60762 -15.52412 -14.76797 -14.61621 -14.19166 -13.90925 -13.75610 -13.45195 -13.19960 -13.08508 -12.99432 -12.83440 -12.40999 -12.22861 -12.16907 -11.98381 -11.81928 -11.42039 -11.33028 -11.26966 -11.08755 -10.89591 -10.65633 -10.60126 -9.31581 -8.87638 -8.20668 -6.19852 1.33531 1.34116 1.42797 2.36704 3.03836 3.11832 3.18396 3.37085 3.83361 3.86105 3.97889 4.18830 4.24280 4.30152 4.38025 4.47514 4.48971 4.51378 4.59682 4.64657 4.68992 4.77266 4.84942 4.87742 4.89614 4.96736 5.03046 5.07889 5.10184 5.15883 5.26200 5.32360 5.38829 5.47995 5.53365 5.57233 5.69729 6.10484 6.20538 6.36993 6.55773 6.77065 6.88587 7.41684 8.95174 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.016928 B = 0.008984 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.694910 B = 3115.811976 C = 4236.415704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.706 5.706 3 C 0.088 3.912 4 C -0.096 4.096 5 C -0.110 4.110 6 C 0.093 3.907 7 N -0.511 5.511 8 C 0.177 3.823 9 C -0.498 4.498 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.950 5.950 13 Si 0.933 3.067 14 H -0.269 1.269 15 H -0.287 1.287 16 H -0.253 1.253 17 C 0.008 3.992 18 C -0.147 4.147 19 C -0.172 4.172 20 C -0.147 4.147 21 C -0.134 4.134 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.024 0.976 25 H 0.335 0.665 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.029 0.971 33 H -0.017 1.017 34 H 0.262 0.738 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 15.155 -4.900 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.338 5.338 3 C -0.022 4.022 4 C -0.134 4.134 5 C -0.148 4.148 6 C -0.015 4.015 7 N -0.234 5.234 8 C 0.050 3.950 9 C -0.537 4.537 10 H 0.069 0.931 11 C -0.189 4.189 12 N -0.592 5.592 13 Si 0.758 3.242 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.177 1.177 17 C -0.101 4.101 18 C -0.185 4.185 19 C -0.209 4.209 20 C -0.187 4.187 21 C -0.173 4.173 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.042 0.958 25 H 0.154 0.846 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.001 0.999 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.959 14.886 -5.780 19.368 hybrid contribution -1.247 -0.978 1.567 2.229 sum -12.205 13.908 -4.213 18.978 Atomic orbital electron populations 1.22244 0.87310 1.01909 1.00739 1.60639 1.08381 1.14488 1.50284 1.21650 0.96572 0.88986 0.95001 1.21479 0.93416 0.99799 0.98731 1.21538 0.99596 0.99554 0.94065 1.21714 0.89830 0.96831 0.93131 1.61852 1.48140 1.01927 1.11435 1.19904 0.93369 0.86517 0.95174 1.21475 0.96489 0.92777 1.42949 0.93064 1.25719 1.00565 0.97341 0.95272 1.70044 1.34299 1.05053 1.49836 0.85914 0.81412 0.78339 0.78497 1.19393 1.21330 1.17710 1.22197 0.92383 1.04249 0.91223 1.23029 0.99686 0.93022 1.02715 1.22916 1.02144 0.97476 0.98409 1.22159 0.97222 0.99489 0.99804 1.22062 0.98942 1.00179 0.96145 0.90655 0.91857 0.95774 0.84591 0.88935 0.90120 0.91390 0.92702 0.93143 0.89681 0.95306 0.99900 0.92889 0.90327 0.89150 0.86686 0.89277 0.90532 0.93913 0.92272 0.89776 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.50 127.69 1.34 1.89 16 2 N -0.71 -17.68 6.12 -514.62 -3.15 -20.83 16 3 C 0.09 1.87 2.85 44.92 0.13 2.00 16 4 C -0.10 -2.20 5.64 30.60 0.17 -2.02 16 5 C -0.11 -3.37 4.82 30.59 0.15 -3.22 16 6 C 0.09 2.92 2.23 44.91 0.10 3.02 16 7 N -0.51 -20.54 4.57 -850.40 -3.88 -24.42 16 8 C 0.18 8.38 2.70 85.56 0.23 8.61 16 9 C -0.50 -28.56 8.60 25.60 0.22 -28.34 16 10 H 0.05 3.25 5.73 -2.91 -0.02 3.23 16 11 C 0.01 0.43 5.47 84.65 0.46 0.89 16 12 N -0.95 -60.00 13.96 21.45 0.30 -59.70 16 13 Si 0.93 44.99 27.58 68.60 1.89 46.88 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 16 H -0.25 -11.41 6.38 99.48 0.64 -10.77 16 17 C 0.01 0.31 4.53 44.91 0.20 0.51 16 18 C -0.15 -4.61 10.46 30.60 0.32 -4.29 16 19 C -0.17 -6.84 9.38 30.59 0.29 -6.55 16 20 C -0.15 -4.15 4.36 30.60 0.13 -4.02 16 21 C -0.13 -2.83 5.52 30.60 0.17 -2.66 16 22 H 0.07 1.29 8.05 -2.39 -0.02 1.27 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.02 0.45 7.44 -2.39 -0.02 0.43 16 25 H 0.33 9.79 5.65 -89.69 -0.51 9.28 16 26 H 0.09 1.65 7.80 -2.39 -0.02 1.63 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.05 1.80 5.17 -2.38 -0.01 1.79 16 31 H 0.09 2.44 8.13 -2.39 -0.02 2.42 16 32 H 0.03 1.38 5.35 -2.38 -0.01 1.37 16 33 H -0.02 -0.81 5.87 -2.39 -0.01 -0.82 16 34 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 35 H 0.08 2.77 6.58 -2.38 -0.02 2.75 16 36 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.08 3.73 5.67 -2.39 -0.01 3.72 16 40 H 0.04 1.39 4.90 -2.39 -0.01 1.38 16 41 H 0.06 1.68 6.50 -2.39 -0.02 1.67 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.24 7.45 -2.39 -0.02 1.22 16 Total: -1.00 -64.72 313.60 -0.51 -65.23 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.41 Total: 27.03 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 3.92 Total: -34.19 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -6.73 Total: -104.95 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.89 Total: 46.88 kcal Total: -64.72 -0.51 -65.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157356485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.630 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds