Wall clock time and date at job start Mon Mar 30 2020 04:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46957 * 111.00007 * 2 1 4 4 C 1.53048 * 109.36775 * 183.18740 * 3 2 1 5 5 N 1.46955 * 109.36180 * 301.59801 * 4 3 2 6 6 C 1.46908 * 110.99995 * 183.18494 * 5 4 3 7 7 C 1.52995 * 109.47056 * 176.20184 * 6 5 4 8 8 C 1.53001 * 109.47010 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47061 * 60.00081 * 8 7 6 10 10 C 1.53007 * 109.46838 * 299.99785 * 9 8 7 11 11 C 1.52998 * 109.46653 * 56.19866 * 6 5 4 12 12 C 1.46955 * 110.88264 * 59.32121 * 5 4 3 13 13 C 1.46955 * 110.99833 * 123.79719 * 2 1 3 14 14 H 1.09001 * 109.48955 * 296.77865 * 13 2 1 15 15 C 1.50698 * 109.50769 * 56.83611 * 13 2 1 16 16 H 1.08000 * 119.99891 * 34.64785 * 15 13 2 17 17 C 1.37879 * 119.99958 * 214.64394 * 15 13 2 18 18 N 1.31519 * 119.99775 * 184.39084 * 17 15 13 19 19 Si 1.86794 * 120.00127 * 4.39247 * 17 15 13 20 20 H 1.48500 * 109.47400 * 85.11914 * 19 17 15 21 21 H 1.48498 * 109.47456 * 205.12128 * 19 17 15 22 22 H 1.48503 * 109.47214 * 325.12137 * 19 17 15 23 23 H 1.09000 * 109.47268 * 290.33148 * 1 2 3 24 24 H 1.08998 * 109.47241 * 50.33376 * 1 2 3 25 25 H 1.08998 * 109.46731 * 170.32803 * 1 2 3 26 26 H 1.09001 * 109.49094 * 63.21746 * 3 2 1 27 27 H 1.09005 * 109.50590 * 303.16314 * 3 2 1 28 28 H 1.08996 * 109.49273 * 181.63319 * 4 3 2 29 29 H 1.09001 * 109.48695 * 61.56313 * 4 3 2 30 30 H 1.08997 * 109.46766 * 296.20316 * 6 5 4 31 31 H 1.09008 * 109.47101 * 300.00052 * 7 6 5 32 32 H 1.09000 * 109.47602 * 60.00414 * 7 6 5 33 33 H 1.08998 * 109.47100 * 299.99807 * 8 7 6 34 34 H 1.09005 * 109.47232 * 179.97438 * 8 7 6 35 35 H 1.08999 * 109.47010 * 180.02562 * 9 8 7 36 36 H 1.08998 * 109.47387 * 59.99902 * 9 8 7 37 37 H 1.08998 * 109.47227 * 300.00214 * 10 9 8 38 38 H 1.09001 * 109.46892 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.47742 * 300.00096 * 11 6 5 40 40 H 1.09008 * 109.47064 * 60.00217 * 11 6 5 41 41 H 1.08997 * 109.49161 * 180.70817 * 12 5 4 42 42 H 1.09001 * 109.49133 * 60.64537 * 12 5 4 43 43 H 0.96996 * 119.99823 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0500 0.5660 1.0598 6 6 5.5191 0.5660 1.0599 7 6 6.0290 -0.1552 2.3091 8 6 7.5590 -0.1547 2.3094 9 6 8.0685 1.2880 2.3098 10 6 7.5585 2.0092 1.0604 11 6 6.0290 2.0085 1.0598 12 6 3.5235 -0.8060 1.0599 13 6 1.9956 -0.7632 1.1401 14 1 1.6937 -0.2820 2.0704 15 6 1.4505 -2.1675 1.1005 16 1 1.2796 -2.6539 0.1514 17 6 1.1700 -2.8316 2.2758 18 7 0.7765 -4.0861 2.2445 19 14 1.3487 -1.9494 3.9126 20 1 0.1024 -1.1983 4.2089 21 1 1.5942 -2.9445 4.9871 22 1 2.4917 -1.0038 3.8431 23 1 -0.3634 0.3571 0.9636 24 1 -0.3633 0.6560 -0.7910 25 1 -0.3633 -1.0131 -0.1727 26 1 1.6937 1.8774 0.9173 27 1 1.6013 1.9132 -0.8601 28 1 3.9177 2.3449 -0.0512 29 1 3.8253 0.8480 -1.0106 30 1 5.8824 0.0522 0.1699 31 1 5.6656 0.3587 3.1991 32 1 5.6658 -1.1829 2.3091 33 1 7.9227 -0.6683 1.4195 34 1 7.9224 -0.6681 3.1997 35 1 9.1585 1.2884 2.3096 36 1 7.7048 1.8016 3.1997 37 1 7.9222 1.4956 0.1705 38 1 7.9218 3.0369 1.0604 39 1 5.6657 2.5223 0.1698 40 1 5.6656 2.5224 1.9498 41 1 3.9178 -1.3469 1.9201 42 1 3.8254 -1.3114 0.1426 43 1 0.5788 -4.5532 3.0713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221594252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:15 Heat of formation + Delta-G solvation = -3.544735 kcal Electronic energy + Delta-G solvation = -20144.429028 eV Core-core repulsion = 17416.661013 eV Total energy + Delta-G solvation = -2727.768015 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 252.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38841 -37.45597 -34.33912 -32.71457 -31.04566 -30.00259 -29.68743 -26.71282 -25.12162 -23.12219 -22.68468 -21.44451 -20.75716 -19.49585 -18.78988 -16.94940 -16.12086 -14.84828 -14.59414 -14.43781 -14.12133 -14.11097 -13.86392 -13.81274 -13.18409 -12.95400 -12.54977 -12.35958 -12.30945 -11.88932 -11.55690 -11.39773 -11.07754 -11.02227 -10.98787 -10.70576 -10.60736 -10.50655 -10.15382 -10.13544 -9.97843 -9.83552 -9.53091 -9.09738 -8.58411 -7.73125 -7.25352 -6.11108 -4.11256 3.27741 3.36543 3.43581 4.32050 4.40238 4.80104 4.81774 4.89886 5.04793 5.25086 5.32421 5.41856 5.54975 5.55541 5.61829 5.62502 5.69646 5.79577 5.83539 5.91311 6.04631 6.09433 6.16421 6.17819 6.24536 6.28829 6.30870 6.34278 6.43619 6.45404 6.48880 6.56642 6.64691 6.78995 6.98323 7.18714 7.46205 7.69427 7.78276 8.02379 8.15538 8.66254 8.99843 9.52915 11.01279 Molecular weight = 252.19amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.007679 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.731178 B = 3645.388164 C = 4513.030174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.538 5.538 3 C 0.054 3.946 4 C 0.061 3.939 5 N -0.544 5.544 6 C 0.088 3.912 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.117 4.117 11 C -0.113 4.113 12 C 0.068 3.932 13 C 0.190 3.810 14 H 0.010 0.990 15 C -0.504 4.504 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.867 3.133 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.258 1.258 23 H 0.011 0.989 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.851 11.899 -1.262 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.263 5.263 3 C -0.075 4.075 4 C -0.068 4.068 5 N -0.269 5.269 6 C -0.021 4.021 7 C -0.153 4.153 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.155 4.155 11 C -0.151 4.151 12 C -0.060 4.060 13 C 0.083 3.917 14 H 0.028 0.972 15 C -0.543 4.543 16 H 0.098 0.902 17 C -0.127 4.127 18 N -0.532 5.532 19 Si 0.695 3.305 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.182 1.182 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.787 11.729 -1.148 15.976 hybrid contribution -0.009 0.323 0.967 1.020 sum 10.778 12.051 -0.180 16.169 Atomic orbital electron populations 1.22082 0.87990 1.02434 0.97803 1.62253 1.07517 1.10574 1.45948 1.22108 0.94244 0.91777 0.99365 1.22096 0.94918 0.97615 0.92128 1.62357 1.05891 1.16484 1.42182 1.21544 0.88184 0.95396 0.96959 1.21630 0.94368 1.01106 0.98238 1.21525 0.95947 0.96430 1.01625 1.21539 0.99599 0.96173 0.98285 1.21509 0.95851 0.99955 0.98157 1.21641 0.94666 0.96607 1.02205 1.22592 0.97176 0.86126 1.00082 1.19738 0.90298 0.94147 0.87532 0.97223 1.20869 1.42499 0.96140 0.94798 0.90171 1.25001 0.94355 0.94656 0.98733 1.69894 1.45722 1.09734 1.27858 0.86989 0.79631 0.79897 0.84033 1.20383 1.21489 1.18216 0.96998 0.93914 0.90181 0.95397 0.91775 0.91246 0.94785 0.94755 0.91406 0.91376 0.92212 0.92070 0.92481 0.92052 0.92275 0.92250 0.92050 0.91375 0.91101 0.94854 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 9.19 60.06 0.55 1.47 16 2 N -0.54 -11.67 4.78 -236.13 -1.13 -12.80 16 3 C 0.05 0.98 5.61 -3.77 -0.02 0.96 16 4 C 0.06 1.03 5.23 -3.77 -0.02 1.01 16 5 N -0.54 -10.11 4.58 -226.49 -1.04 -11.15 16 6 C 0.09 1.36 1.94 -67.71 -0.13 1.23 16 7 C -0.12 -1.74 4.97 -26.73 -0.13 -1.88 16 8 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 9 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 10 C -0.12 -1.24 5.92 -26.75 -0.16 -1.40 16 11 C -0.11 -1.45 4.85 -26.76 -0.13 -1.58 16 12 C 0.07 1.49 4.58 -3.76 -0.02 1.47 16 13 C 0.19 4.59 1.58 -68.81 -0.11 4.48 16 14 H 0.01 0.26 5.33 -51.93 -0.28 -0.02 16 15 C -0.50 -13.99 7.61 -34.44 -0.26 -14.25 16 16 H 0.08 2.46 8.05 -52.49 -0.42 2.04 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.88 13.96 55.43 0.77 -26.10 16 19 Si 0.87 21.57 26.98 -169.99 -4.59 16.99 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.26 -6.27 6.83 56.52 0.39 -5.88 16 23 H 0.01 0.24 8.12 -51.93 -0.42 -0.18 16 24 H 0.04 0.73 8.03 -51.93 -0.42 0.31 16 25 H 0.08 1.78 7.23 -51.93 -0.38 1.41 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 28 H 0.07 1.00 6.06 -51.93 -0.31 0.69 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.07 1.14 6.34 -51.93 -0.33 0.81 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.75 6.28 -51.93 -0.33 0.43 16 40 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.07 1.61 6.14 -51.93 -0.32 1.29 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -29.30 315.82 -9.91 -39.21 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.85 Total: -1.49 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.84 Total: -9.42 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: -1.39 Total: -50.05 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.99 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.30 -9.91 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221594252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.668 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds